Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20190

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,600,927	-		DDA3937_RS20180	0.71	-1.2
4,600,946	+		DDA3937_RS20180	0.72	-1.2
4,600,947	-		DDA3937_RS20180	0.72	-1.7
4,600,951	+		DDA3937_RS20180	0.72	-3.3
4,600,952	-		DDA3937_RS20180	0.72	-3.0
4,600,952	-		DDA3937_RS20180	0.72	-1.7
4,600,952	-		DDA3937_RS20180	0.72	-0.3
4,601,015	+		DDA3937_RS20180	0.76	+0.8
4,601,016	-		DDA3937_RS20180	0.77	+1.0
4,601,016	-		DDA3937_RS20180	0.77	-2.3
4,601,016	-		DDA3937_RS20180	0.77	-0.6
4,601,070	-		DDA3937_RS20180	0.80	-3.1
4,601,081	+		DDA3937_RS20180	0.81	-2.7
4,601,082	-		DDA3937_RS20180	0.81	+1.2
4,601,105	+		DDA3937_RS20180	0.82	+1.2
4,601,188	+		DDA3937_RS20180	0.88	+1.2
4,601,189	-		DDA3937_RS20180	0.88	-1.0
4,601,259	+				+2.2
4,601,259	+				-0.3
4,601,259	+				+0.7
4,601,260	-				+1.5
4,601,260	-				-2.1
4,601,298	+				+4.6
4,601,299	-				-1.7
4,601,299	-				-0.8
4,601,323	+				-2.1
4,601,323	+				-3.0
4,601,323	+				-2.2
4,601,323	+				-1.1
4,601,324	-				-2.3
4,601,324	-				-1.9
4,601,324	-				+0.7
4,601,331	+				+1.4
4,601,331	+				+0.0
4,601,331	+				-4.4
4,601,332	-				-2.8
4,601,332	-				-0.7
4,601,392	+				-0.7
4,601,393	-				-1.2
4,601,437	+				+3.5
4,601,438	-				-3.1
4,601,587	-		DDA3937_RS20185	0.45	-0.7
4,601,797	-				-2.7
4,601,797	-				+0.3
4,601,797	-				-1.6
4,601,797	-				+1.0
4,601,797	-				-2.7
4,601,797	-				+0.3
4,601,797	-				-0.0
4,601,826	+				+2.4
4,601,827	-				-2.1
4,601,831	-				+0.4
4,601,860	+				-1.9
4,601,969	+				+0.6
4,601,970	-				-0.7
4,601,970	-				-1.2
4,601,970	-				-2.6
4,601,973	+				+0.3
4,602,316	-		DDA3937_RS20190	0.51	+1.6
4,602,363	+		DDA3937_RS20190	0.57	-3.3
4,602,403	+		DDA3937_RS20190	0.62	-1.2
4,602,425	+				+0.6
4,602,462	-		DDA3937_RS20190	0.69	-2.5
4,602,493	-		DDA3937_RS20190	0.73	-1.6
4,602,598	-		DDA3937_RS20190	0.85	+0.0
4,602,638	+				+1.0
4,602,639	-				+0.5
4,602,639	-				+5.6
4,602,639	-				-0.7
4,602,688	-				-2.1
4,602,690	+				-0.4
4,602,690	+				+3.0
4,602,690	+				-2.6
4,602,690	+				-1.9
4,602,691	-				-1.7
4,602,708	+				+0.5
4,602,708	+				+1.2
4,602,708	+				-1.0
4,602,708	+				-1.9
4,602,709	-				+0.1
4,602,709	-				-0.9
4,602,709	-				+0.8
4,602,709	-				-0.4
4,602,716	+				+0.6
4,602,724	+				+0.6
4,602,724	+				+0.2
4,602,724	+				-3.7
4,602,725	-				+1.7
4,602,725	-				-2.8
4,602,735	+				-3.7
4,602,735	+				+0.7
4,602,735	+				-2.1
4,602,736	-				-0.0
4,602,736	-				-1.0
4,602,736	-				-2.3
4,602,736	-				-3.4
4,602,779	-				+1.8
4,602,779	-				-1.2
4,602,779	-				-2.6
4,602,799	+				-1.0
4,602,799	+				-3.7
4,602,800	-				-0.7
4,602,800	-				-0.4
4,602,812	+				+0.1
4,602,812	+				-1.9
4,602,812	+				+0.6
4,602,812	+				-2.5
4,602,812	+				-0.7
4,602,812	+				-1.3
4,602,812	+				-3.3
4,602,812	+				+0.3
4,602,812	+				-0.3
4,602,812	+				-3.0
4,602,813	-				-1.0
4,602,813	-				-1.2
4,602,813	-				-3.3
4,602,813	-				+0.9
4,602,813	-				-0.8
4,602,813	-				-3.1
4,602,813	-				+0.3
4,602,813	-				-3.7
4,602,813	-				+0.3
4,602,814	+				+1.4
4,602,814	+				-3.2
4,602,814	+				-3.4
4,602,814	+				+0.5
4,602,814	+				-2.0
4,602,814	+				+0.2
4,602,815	-				+0.3
4,602,815	-				-3.1
4,602,815	-				-1.6
4,602,815	-				-2.8
4,602,815	-				-1.4
4,602,815	-				-1.6
4,602,815	-				-2.9
4,602,815	-				-0.6
4,602,815	-				-1.7
4,602,815	-				+2.1
4,602,835	+				-0.8
4,602,836	-				-0.5
4,602,836	-				-1.2
4,602,855	-				+0.1
4,602,869	+				-0.8
4,602,869	+				-1.6
4,602,869	+				-1.0
4,602,869	+				-1.2
4,602,869	+				-0.9
4,602,869	+				+0.0
4,602,869	+				-0.0
4,602,869	+				+0.8
4,602,890	+				+1.0
4,602,890	+				-0.6
4,602,890	+				-1.6
4,602,890	+				+1.1
4,602,890	+				-0.2
4,602,890	+				+2.3
4,602,890	+				-0.9
4,602,890	+				+0.8
4,602,890	+				-1.0
4,602,890	+				-2.6
4,602,890	+				-1.3
4,602,890	+				-0.1
4,602,890	+				+2.2
4,602,890	+				-0.4
4,602,890	+				-3.5
4,602,890	+				-2.6
4,602,890	+				+0.4
4,602,890	+				+1.0
4,602,890	+				-1.7
4,602,890	+				-1.9
4,602,890	+				+0.2
4,602,890	+				+0.9
4,602,890	+				-1.0
4,602,891	-				-1.0
4,602,891	-				-2.0
4,602,891	-				+1.7
4,602,891	-				-1.6
4,602,891	-				+1.4
4,602,891	-				-1.4
4,602,891	-				-2.1
4,602,891	-				+0.4
4,602,891	-				-3.8
4,602,891	-				-2.8
4,602,891	-				-0.2
4,602,891	-				-3.2
4,602,891	-				-2.1
4,602,891	-				-2.1
4,602,891	-				-0.1
4,602,891	-				-1.4
4,602,891	-				-1.7
4,602,892	+				+1.8
4,602,892	+				-3.2
4,602,892	+				-0.2
4,602,892	+				+3.6
4,602,892	+				-0.0
4,602,892	+				+0.7
4,602,892	+				-1.9
4,602,892	+				-1.5
4,602,892	+				+1.6
4,602,893	-				+1.0
4,602,893	-				+1.7
4,602,893	-				+0.5
4,602,893	-				-1.0
4,602,893	-				-1.3
4,602,893	-				+1.1
4,602,902	+				+1.5
4,602,902	+				-0.0
4,602,902	+				+0.4
4,602,902	+				-2.3
4,602,902	+				-0.4
4,602,903	-				-0.4
4,602,903	-				-3.3
4,602,903	-				-1.8
4,602,919	+				+2.4
4,602,920	-				+1.2
4,602,940	+				+3.8
4,602,941	-				-0.4
4,602,971	+				-0.6
4,602,971	+				-1.6
4,602,997	+				-0.2
4,602,998	-				-0.8
4,602,998	-				-2.5
4,603,647	-				+0.6