Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20060

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20055 and DDA3937_RS20060 are separated by 86 nucleotidesDDA3937_RS20060 and DDA3937_RS20065 are separated by 71 nucleotides DDA3937_RS20055: DDA3937_RS20055 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 4,563,463 to 4,564,593 _RS20055 DDA3937_RS20060: DDA3937_RS20060 - ECA polysaccharide chain length modulation protein, at 4,564,680 to 4,565,714 _RS20060 DDA3937_RS20065: DDA3937_RS20065 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 4,565,786 to 4,566,859 _RS20065 Position (kb) 4564 4565 4566Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.777 kb on - strand, within DDA3937_RS20055at 4563.822 kb on + strand, within DDA3937_RS20055at 4563.822 kb on + strand, within DDA3937_RS20055at 4563.822 kb on + strand, within DDA3937_RS20055at 4563.841 kb on + strand, within DDA3937_RS20055at 4563.841 kb on + strand, within DDA3937_RS20055at 4563.842 kb on - strand, within DDA3937_RS20055at 4563.842 kb on - strand, within DDA3937_RS20055at 4563.842 kb on - strand, within DDA3937_RS20055at 4563.842 kb on - strand, within DDA3937_RS20055at 4563.860 kb on - strand, within DDA3937_RS20055at 4563.866 kb on + strand, within DDA3937_RS20055at 4564.002 kb on - strand, within DDA3937_RS20055at 4564.063 kb on + strand, within DDA3937_RS20055at 4564.063 kb on + strandat 4564.163 kb on + strand, within DDA3937_RS20055at 4564.164 kb on - strand, within DDA3937_RS20055at 4564.164 kb on - strand, within DDA3937_RS20055at 4564.164 kb on - strand, within DDA3937_RS20055at 4564.249 kb on - strand, within DDA3937_RS20055at 4564.263 kb on + strand, within DDA3937_RS20055at 4564.264 kb on - strand, within DDA3937_RS20055at 4564.271 kb on + strand, within DDA3937_RS20055at 4564.272 kb on - strand, within DDA3937_RS20055at 4564.272 kb on - strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.327 kb on + strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.328 kb on - strand, within DDA3937_RS20055at 4564.413 kb on + strand, within DDA3937_RS20055at 4564.413 kb on + strand, within DDA3937_RS20055at 4564.428 kb on - strand, within DDA3937_RS20055at 4564.552 kb on + strandat 4564.585 kb on + strandat 4564.586 kb on - strandat 4564.586 kb on - strandat 4564.607 kb on + strandat 4564.607 kb on + strandat 4564.608 kb on - strandat 4564.643 kb on + strandat 4564.644 kb on - strandat 4564.649 kb on + strandat 4564.649 kb on + strandat 4564.649 kb on + strandat 4564.654 kb on + strandat 4564.655 kb on - strandat 4564.655 kb on - strandat 4564.655 kb on - strandat 4564.655 kb on - strandat 4564.655 kb on - strandat 4564.796 kb on + strand, within DDA3937_RS20060at 4564.796 kb on + strand, within DDA3937_RS20060at 4564.796 kb on + strand, within DDA3937_RS20060at 4564.796 kb on + strand, within DDA3937_RS20060at 4564.810 kb on + strand, within DDA3937_RS20060at 4564.811 kb on - strand, within DDA3937_RS20060at 4564.811 kb on - strand, within DDA3937_RS20060at 4564.811 kb on - strand, within DDA3937_RS20060at 4564.811 kb on - strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.001 kb on + strand, within DDA3937_RS20060at 4565.002 kb on - strand, within DDA3937_RS20060at 4565.002 kb on - strand, within DDA3937_RS20060at 4565.002 kb on - strand, within DDA3937_RS20060at 4565.049 kb on + strand, within DDA3937_RS20060at 4565.050 kb on - strand, within DDA3937_RS20060at 4565.050 kb on - strand, within DDA3937_RS20060at 4565.050 kb on - strand, within DDA3937_RS20060at 4565.062 kb on + strand, within DDA3937_RS20060at 4565.063 kb on - strand, within DDA3937_RS20060at 4565.188 kb on + strand, within DDA3937_RS20060at 4565.188 kb on + strand, within DDA3937_RS20060at 4565.188 kb on + strandat 4565.188 kb on + strand, within DDA3937_RS20060at 4565.188 kb on + strand, within DDA3937_RS20060at 4565.188 kb on + strand, within DDA3937_RS20060at 4565.189 kb on - strand, within DDA3937_RS20060at 4565.189 kb on - strand, within DDA3937_RS20060at 4565.189 kb on - strand, within DDA3937_RS20060at 4565.189 kb on - strand, within DDA3937_RS20060at 4565.189 kb on - strand, within DDA3937_RS20060at 4565.244 kb on - strand, within DDA3937_RS20060at 4565.285 kb on + strand, within DDA3937_RS20060at 4565.286 kb on - strand, within DDA3937_RS20060at 4565.353 kb on + strandat 4565.353 kb on + strand, within DDA3937_RS20060at 4565.353 kb on + strand, within DDA3937_RS20060at 4565.354 kb on - strand, within DDA3937_RS20060at 4565.354 kb on - strand, within DDA3937_RS20060at 4565.389 kb on + strand, within DDA3937_RS20060at 4565.390 kb on - strand, within DDA3937_RS20060at 4565.578 kb on + strand, within DDA3937_RS20060at 4565.578 kb on + strand, within DDA3937_RS20060at 4565.578 kb on + strand, within DDA3937_RS20060at 4565.578 kb on + strand, within DDA3937_RS20060at 4565.579 kb on - strand, within DDA3937_RS20060at 4565.579 kb on - strand, within DDA3937_RS20060at 4565.579 kb on - strand, within DDA3937_RS20060at 4565.868 kb on + strandat 4565.913 kb on + strand, within DDA3937_RS20065at 4565.978 kb on - strand, within DDA3937_RS20065at 4565.978 kb on - strand, within DDA3937_RS20065at 4565.978 kb on - strand, within DDA3937_RS20065at 4566.034 kb on + strand, within DDA3937_RS20065at 4566.035 kb on - strand, within DDA3937_RS20065at 4566.035 kb on - strand, within DDA3937_RS20065at 4566.085 kb on - strand, within DDA3937_RS20065at 4566.085 kb on - strand, within DDA3937_RS20065at 4566.238 kb on + strand, within DDA3937_RS20065at 4566.239 kb on - strand, within DDA3937_RS20065at 4566.239 kb on - strand, within DDA3937_RS20065at 4566.239 kb on - strand, within DDA3937_RS20065at 4566.240 kb on + strand, within DDA3937_RS20065at 4566.241 kb on - strand, within DDA3937_RS20065at 4566.339 kb on + strand, within DDA3937_RS20065at 4566.339 kb on + strand, within DDA3937_RS20065at 4566.340 kb on - strand, within DDA3937_RS20065at 4566.416 kb on - strand, within DDA3937_RS20065at 4566.460 kb on - strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.502 kb on + strand, within DDA3937_RS20065at 4566.503 kb on - strand, within DDA3937_RS20065at 4566.503 kb on - strand, within DDA3937_RS20065at 4566.503 kb on - strand, within DDA3937_RS20065at 4566.503 kb on - strand, within DDA3937_RS20065at 4566.503 kb on - strand, within DDA3937_RS20065at 4566.505 kb on - strand, within DDA3937_RS20065at 4566.518 kb on + strand, within DDA3937_RS20065at 4566.518 kb on + strand, within DDA3937_RS20065at 4566.519 kb on - strand, within DDA3937_RS20065at 4566.550 kb on + strand, within DDA3937_RS20065at 4566.550 kb on + strand, within DDA3937_RS20065at 4566.550 kb on + strand, within DDA3937_RS20065at 4566.551 kb on - strand, within DDA3937_RS20065at 4566.555 kb on - strand, within DDA3937_RS20065at 4566.648 kb on + strand, within DDA3937_RS20065at 4566.648 kb on + strand, within DDA3937_RS20065at 4566.649 kb on - strand, within DDA3937_RS20065at 4566.649 kb on - strand, within DDA3937_RS20065at 4566.649 kb on - strand, within DDA3937_RS20065at 4566.708 kb on + strand, within DDA3937_RS20065at 4566.708 kb on + strand, within DDA3937_RS20065at 4566.709 kb on - strand, within DDA3937_RS20065at 4566.709 kb on - strand, within DDA3937_RS20065at 4566.709 kb on - strand, within DDA3937_RS20065

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,563,777 - DDA3937_RS20055 0.28 -2.2
4,563,777 - DDA3937_RS20055 0.28 +1.7
4,563,777 - DDA3937_RS20055 0.28 -0.7
4,563,777 - DDA3937_RS20055 0.28 -1.6
4,563,777 - DDA3937_RS20055 0.28 +0.9
4,563,777 - DDA3937_RS20055 0.28 -1.8
4,563,777 - DDA3937_RS20055 0.28 -2.6
4,563,822 + DDA3937_RS20055 0.32 -1.8
4,563,822 + DDA3937_RS20055 0.32 +0.7
4,563,822 + DDA3937_RS20055 0.32 -2.0
4,563,841 + DDA3937_RS20055 0.33 -1.6
4,563,841 + DDA3937_RS20055 0.33 -1.2
4,563,842 - DDA3937_RS20055 0.34 -0.2
4,563,842 - DDA3937_RS20055 0.34 +1.0
4,563,842 - DDA3937_RS20055 0.34 -1.1
4,563,842 - DDA3937_RS20055 0.34 -1.9
4,563,860 - DDA3937_RS20055 0.35 -2.0
4,563,866 + DDA3937_RS20055 0.36 +0.5
4,564,002 - DDA3937_RS20055 0.48 -0.4
4,564,063 + DDA3937_RS20055 0.53 -2.4
4,564,063 + -0.4
4,564,163 + DDA3937_RS20055 0.62 +0.0
4,564,164 - DDA3937_RS20055 0.62 -3.6
4,564,164 - DDA3937_RS20055 0.62 -2.3
4,564,164 - DDA3937_RS20055 0.62 -1.1
4,564,249 - DDA3937_RS20055 0.69 +0.5
4,564,263 + DDA3937_RS20055 0.71 +1.4
4,564,264 - DDA3937_RS20055 0.71 +1.9
4,564,271 + DDA3937_RS20055 0.71 +0.9
4,564,272 - DDA3937_RS20055 0.72 -1.7
4,564,272 - DDA3937_RS20055 0.72 +0.6
4,564,327 + DDA3937_RS20055 0.76 +0.5
4,564,327 + DDA3937_RS20055 0.76 -3.5
4,564,327 + DDA3937_RS20055 0.76 +0.9
4,564,327 + DDA3937_RS20055 0.76 +0.1
4,564,327 + DDA3937_RS20055 0.76 +3.1
4,564,327 + DDA3937_RS20055 0.76 -0.4
4,564,327 + DDA3937_RS20055 0.76 -3.6
4,564,328 - DDA3937_RS20055 0.76 +0.0
4,564,328 - DDA3937_RS20055 0.76 +1.1
4,564,328 - DDA3937_RS20055 0.76 -2.0
4,564,328 - DDA3937_RS20055 0.76 +1.6
4,564,328 - DDA3937_RS20055 0.76 +0.6
4,564,328 - DDA3937_RS20055 0.76 -3.2
4,564,413 + DDA3937_RS20055 0.84 +2.6
4,564,413 + DDA3937_RS20055 0.84 +1.1
4,564,428 - DDA3937_RS20055 0.85 -1.2
4,564,552 + +1.0
4,564,585 + +0.1
4,564,586 - -0.1
4,564,586 - +0.3
4,564,607 + +0.1
4,564,607 + -3.0
4,564,608 - +0.8
4,564,643 + -1.6
4,564,644 - +2.6
4,564,649 + -2.2
4,564,649 + -1.5
4,564,649 + +0.4
4,564,654 + -1.7
4,564,655 - +0.9
4,564,655 - -3.5
4,564,655 - -0.6
4,564,655 - +2.5
4,564,655 - -1.2
4,564,796 + DDA3937_RS20060 0.11 -0.1
4,564,796 + DDA3937_RS20060 0.11 +0.7
4,564,796 + DDA3937_RS20060 0.11 -0.4
4,564,796 + DDA3937_RS20060 0.11 +1.7
4,564,810 + DDA3937_RS20060 0.13 -1.7
4,564,811 - DDA3937_RS20060 0.13 -1.1
4,564,811 - DDA3937_RS20060 0.13 -2.5
4,564,811 - DDA3937_RS20060 0.13 +0.5
4,564,811 - DDA3937_RS20060 0.13 -0.2
4,565,001 + DDA3937_RS20060 0.31 +0.2
4,565,001 + DDA3937_RS20060 0.31 +1.2
4,565,001 + DDA3937_RS20060 0.31 +0.2
4,565,001 + DDA3937_RS20060 0.31 -3.3
4,565,001 + DDA3937_RS20060 0.31 +0.4
4,565,001 + DDA3937_RS20060 0.31 +1.7
4,565,002 - DDA3937_RS20060 0.31 +0.8
4,565,002 - DDA3937_RS20060 0.31 +0.5
4,565,002 - DDA3937_RS20060 0.31 +1.3
4,565,049 + DDA3937_RS20060 0.36 -1.2
4,565,050 - DDA3937_RS20060 0.36 -2.5
4,565,050 - DDA3937_RS20060 0.36 -3.4
4,565,050 - DDA3937_RS20060 0.36 -2.6
4,565,062 + DDA3937_RS20060 0.37 +1.0
4,565,063 - DDA3937_RS20060 0.37 +0.1
4,565,188 + DDA3937_RS20060 0.49 -2.3
4,565,188 + DDA3937_RS20060 0.49 +1.6
4,565,188 + +0.6
4,565,188 + DDA3937_RS20060 0.49 +1.3
4,565,188 + DDA3937_RS20060 0.49 -1.4
4,565,188 + DDA3937_RS20060 0.49 +2.0
4,565,189 - DDA3937_RS20060 0.49 +1.8
4,565,189 - DDA3937_RS20060 0.49 +1.4
4,565,189 - DDA3937_RS20060 0.49 -0.5
4,565,189 - DDA3937_RS20060 0.49 +2.0
4,565,189 - DDA3937_RS20060 0.49 -2.7
4,565,244 - DDA3937_RS20060 0.54 -3.2
4,565,285 + DDA3937_RS20060 0.58 +0.9
4,565,286 - DDA3937_RS20060 0.59 +3.3
4,565,353 + -0.7
4,565,353 + DDA3937_RS20060 0.65 -2.7
4,565,353 + DDA3937_RS20060 0.65 -1.0
4,565,354 - DDA3937_RS20060 0.65 -1.0
4,565,354 - DDA3937_RS20060 0.65 +0.3
4,565,389 + DDA3937_RS20060 0.69 -2.6
4,565,390 - DDA3937_RS20060 0.69 +1.2
4,565,578 + DDA3937_RS20060 0.87 +1.6
4,565,578 + DDA3937_RS20060 0.87 +0.5
4,565,578 + DDA3937_RS20060 0.87 -0.2
4,565,578 + DDA3937_RS20060 0.87 +1.4
4,565,579 - DDA3937_RS20060 0.87 -1.7
4,565,579 - DDA3937_RS20060 0.87 -1.5
4,565,579 - DDA3937_RS20060 0.87 +0.5
4,565,868 + -0.4
4,565,913 + DDA3937_RS20065 0.12 -1.6
4,565,978 - DDA3937_RS20065 0.18 +0.8
4,565,978 - DDA3937_RS20065 0.18 -0.7
4,565,978 - DDA3937_RS20065 0.18 -2.2
4,566,034 + DDA3937_RS20065 0.23 -1.7
4,566,035 - DDA3937_RS20065 0.23 -3.0
4,566,035 - DDA3937_RS20065 0.23 +2.2
4,566,085 - DDA3937_RS20065 0.28 +0.5
4,566,085 - DDA3937_RS20065 0.28 -2.6
4,566,238 + DDA3937_RS20065 0.42 +1.1
4,566,239 - DDA3937_RS20065 0.42 -1.2
4,566,239 - DDA3937_RS20065 0.42 -2.3
4,566,239 - DDA3937_RS20065 0.42 -2.6
4,566,240 + DDA3937_RS20065 0.42 -1.6
4,566,241 - DDA3937_RS20065 0.42 -1.9
4,566,339 + DDA3937_RS20065 0.51 -2.3
4,566,339 + DDA3937_RS20065 0.51 -1.2
4,566,340 - DDA3937_RS20065 0.52 -0.4
4,566,416 - DDA3937_RS20065 0.59 +0.1
4,566,460 - DDA3937_RS20065 0.63 +0.5
4,566,502 + DDA3937_RS20065 0.67 -1.8
4,566,502 + DDA3937_RS20065 0.67 -1.7
4,566,502 + DDA3937_RS20065 0.67 -3.0
4,566,502 + DDA3937_RS20065 0.67 -2.0
4,566,502 + DDA3937_RS20065 0.67 +1.0
4,566,502 + DDA3937_RS20065 0.67 -3.6
4,566,503 - DDA3937_RS20065 0.67 -1.4
4,566,503 - DDA3937_RS20065 0.67 +0.3
4,566,503 - DDA3937_RS20065 0.67 -0.4
4,566,503 - DDA3937_RS20065 0.67 +0.3
4,566,503 - DDA3937_RS20065 0.67 +0.0
4,566,505 - DDA3937_RS20065 0.67 -3.5
4,566,518 + DDA3937_RS20065 0.68 +1.5
4,566,518 + DDA3937_RS20065 0.68 +0.8
4,566,519 - DDA3937_RS20065 0.68 -0.4
4,566,550 + DDA3937_RS20065 0.71 -1.8
4,566,550 + DDA3937_RS20065 0.71 -0.4
4,566,550 + DDA3937_RS20065 0.71 -2.6
4,566,551 - DDA3937_RS20065 0.71 -1.6
4,566,555 - DDA3937_RS20065 0.72 -1.6
4,566,648 + DDA3937_RS20065 0.80 +2.7
4,566,648 + DDA3937_RS20065 0.80 +0.9
4,566,649 - DDA3937_RS20065 0.80 +1.8
4,566,649 - DDA3937_RS20065 0.80 -0.6
4,566,649 - DDA3937_RS20065 0.80 +0.0
4,566,708 + DDA3937_RS20065 0.86 -2.0
4,566,708 + DDA3937_RS20065 0.86 +1.3
4,566,709 - DDA3937_RS20065 0.86 -1.7
4,566,709 - DDA3937_RS20065 0.86 +0.2
4,566,709 - DDA3937_RS20065 0.86 -2.6

Or see this region's nucleotide sequence