Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19775 and DDA3937_RS19780 are separated by 248 nucleotides DDA3937_RS19780 and DDA3937_RS19785 are separated by 10 nucleotides
DDA3937_RS19775: DDA3937_RS19775 - gluconate transporter, at 4,503,380 to 4,504,696
_RS19775
DDA3937_RS19780: DDA3937_RS19780 - gluconokinase, at 4,504,945 to 4,505,463
_RS19780
DDA3937_RS19785: DDA3937_RS19785 - gluconate operon transcriptional repressor GntR, at 4,505,474 to 4,506,472
_RS19785
Position (kb) 4504
4505
4506 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4503.959 kb on + strand, within DDA3937_RS19775 at 4503.962 kb on + strand, within DDA3937_RS19775 at 4503.963 kb on - strand, within DDA3937_RS19775 at 4503.963 kb on - strand, within DDA3937_RS19775 at 4503.963 kb on - strand, within DDA3937_RS19775 at 4503.963 kb on - strand, within DDA3937_RS19775 at 4504.069 kb on + strand, within DDA3937_RS19775 at 4504.069 kb on + strand, within DDA3937_RS19775 at 4504.069 kb on + strand, within DDA3937_RS19775 at 4504.070 kb on - strand, within DDA3937_RS19775 at 4504.070 kb on - strand, within DDA3937_RS19775 at 4504.070 kb on - strand, within DDA3937_RS19775 at 4504.070 kb on - strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.071 kb on + strand, within DDA3937_RS19775 at 4504.072 kb on - strand, within DDA3937_RS19775 at 4504.072 kb on - strand, within DDA3937_RS19775 at 4504.072 kb on - strand, within DDA3937_RS19775 at 4504.072 kb on - strand at 4504.072 kb on - strand, within DDA3937_RS19775 at 4504.072 kb on - strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.073 kb on + strand, within DDA3937_RS19775 at 4504.074 kb on - strand, within DDA3937_RS19775 at 4504.074 kb on - strand at 4504.074 kb on - strand, within DDA3937_RS19775 at 4504.074 kb on - strand, within DDA3937_RS19775 at 4504.109 kb on + strand, within DDA3937_RS19775 at 4504.120 kb on - strand, within DDA3937_RS19775 at 4504.167 kb on + strand, within DDA3937_RS19775 at 4504.167 kb on + strand, within DDA3937_RS19775 at 4504.167 kb on + strand, within DDA3937_RS19775 at 4504.167 kb on + strand, within DDA3937_RS19775 at 4504.168 kb on - strand, within DDA3937_RS19775 at 4504.284 kb on + strand, within DDA3937_RS19775 at 4504.284 kb on + strand, within DDA3937_RS19775 at 4504.284 kb on + strand, within DDA3937_RS19775 at 4504.285 kb on - strand, within DDA3937_RS19775 at 4504.408 kb on + strand, within DDA3937_RS19775 at 4504.408 kb on + strand, within DDA3937_RS19775 at 4504.408 kb on + strand, within DDA3937_RS19775 at 4504.409 kb on - strand, within DDA3937_RS19775 at 4504.409 kb on - strand, within DDA3937_RS19775 at 4504.409 kb on - strand, within DDA3937_RS19775 at 4504.430 kb on - strand, within DDA3937_RS19775 at 4504.475 kb on + strand, within DDA3937_RS19775 at 4504.475 kb on + strand, within DDA3937_RS19775 at 4504.475 kb on + strand, within DDA3937_RS19775 at 4504.476 kb on - strand, within DDA3937_RS19775 at 4504.637 kb on - strand at 4504.801 kb on + strand at 4504.801 kb on + strand at 4504.802 kb on - strand at 4504.802 kb on - strand at 4504.838 kb on + strand at 4504.840 kb on + strand at 4504.840 kb on + strand at 4504.840 kb on + strand at 4504.840 kb on + strand at 4504.841 kb on - strand at 4504.841 kb on - strand at 4504.881 kb on - strand at 4504.915 kb on + strand at 4504.915 kb on + strand at 4504.915 kb on + strand at 4504.916 kb on - strand at 4504.944 kb on + strand at 4504.959 kb on + strand at 4504.960 kb on - strand at 4504.960 kb on - strand at 4504.962 kb on + strand at 4504.963 kb on - strand at 4505.254 kb on + strand, within DDA3937_RS19780 at 4505.380 kb on - strand, within DDA3937_RS19780 at 4505.394 kb on + strand, within DDA3937_RS19780 at 4505.475 kb on + strand at 4505.475 kb on + strand at 4505.833 kb on - strand, within DDA3937_RS19785 at 4505.886 kb on - strand, within DDA3937_RS19785 at 4505.916 kb on + strand at 4505.916 kb on + strand, within DDA3937_RS19785 at 4505.917 kb on - strand, within DDA3937_RS19785 at 4505.949 kb on + strand at 4505.950 kb on - strand, within DDA3937_RS19785 at 4506.117 kb on + strand, within DDA3937_RS19785 at 4506.169 kb on - strand, within DDA3937_RS19785 at 4506.169 kb on - strand, within DDA3937_RS19785 at 4506.329 kb on + strand at 4506.330 kb on - strand, within DDA3937_RS19785
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,503,959 + DDA3937_RS19775 0.44 -0.4 4,503,962 + DDA3937_RS19775 0.44 +0.4 4,503,963 - DDA3937_RS19775 0.44 +2.7 4,503,963 - DDA3937_RS19775 0.44 -0.8 4,503,963 - DDA3937_RS19775 0.44 +1.1 4,503,963 - DDA3937_RS19775 0.44 +0.6 4,504,069 + DDA3937_RS19775 0.52 -0.3 4,504,069 + DDA3937_RS19775 0.52 +0.1 4,504,069 + DDA3937_RS19775 0.52 -2.6 4,504,070 - DDA3937_RS19775 0.52 -0.6 4,504,070 - DDA3937_RS19775 0.52 -1.4 4,504,070 - DDA3937_RS19775 0.52 -1.4 4,504,070 - DDA3937_RS19775 0.52 -0.5 4,504,071 + DDA3937_RS19775 0.52 -2.1 4,504,071 + DDA3937_RS19775 0.52 +1.2 4,504,071 + DDA3937_RS19775 0.52 +0.8 4,504,071 + DDA3937_RS19775 0.52 -2.3 4,504,071 + DDA3937_RS19775 0.52 -0.7 4,504,071 + DDA3937_RS19775 0.52 -0.2 4,504,071 + DDA3937_RS19775 0.52 +0.4 4,504,071 + DDA3937_RS19775 0.52 -1.4 4,504,071 + DDA3937_RS19775 0.52 +2.1 4,504,071 + DDA3937_RS19775 0.52 -1.6 4,504,071 + DDA3937_RS19775 0.52 -1.0 4,504,071 + DDA3937_RS19775 0.52 -3.5 4,504,071 + DDA3937_RS19775 0.52 -2.6 4,504,071 + DDA3937_RS19775 0.52 -0.3 4,504,071 + DDA3937_RS19775 0.52 -1.8 4,504,071 + DDA3937_RS19775 0.52 +4.4 4,504,072 - DDA3937_RS19775 0.53 -0.5 4,504,072 - DDA3937_RS19775 0.53 +2.4 4,504,072 - DDA3937_RS19775 0.53 +0.9 4,504,072 - -0.7 4,504,072 - DDA3937_RS19775 0.53 +0.9 4,504,072 - DDA3937_RS19775 0.53 -1.6 4,504,073 + DDA3937_RS19775 0.53 -2.2 4,504,073 + DDA3937_RS19775 0.53 -2.5 4,504,073 + DDA3937_RS19775 0.53 -1.8 4,504,073 + DDA3937_RS19775 0.53 -0.7 4,504,073 + DDA3937_RS19775 0.53 +1.5 4,504,073 + DDA3937_RS19775 0.53 -1.6 4,504,073 + DDA3937_RS19775 0.53 -1.0 4,504,074 - DDA3937_RS19775 0.53 +0.7 4,504,074 - +0.0 4,504,074 - DDA3937_RS19775 0.53 +1.4 4,504,074 - DDA3937_RS19775 0.53 -1.1 4,504,109 + DDA3937_RS19775 0.55 +0.7 4,504,120 - DDA3937_RS19775 0.56 -2.0 4,504,167 + DDA3937_RS19775 0.60 -0.5 4,504,167 + DDA3937_RS19775 0.60 -2.2 4,504,167 + DDA3937_RS19775 0.60 +1.0 4,504,167 + DDA3937_RS19775 0.60 -0.8 4,504,168 - DDA3937_RS19775 0.60 -0.0 4,504,284 + DDA3937_RS19775 0.69 -2.3 4,504,284 + DDA3937_RS19775 0.69 -1.1 4,504,284 + DDA3937_RS19775 0.69 -2.1 4,504,285 - DDA3937_RS19775 0.69 -0.8 4,504,408 + DDA3937_RS19775 0.78 +0.8 4,504,408 + DDA3937_RS19775 0.78 -3.4 4,504,408 + DDA3937_RS19775 0.78 +0.1 4,504,409 - DDA3937_RS19775 0.78 -1.0 4,504,409 - DDA3937_RS19775 0.78 -1.0 4,504,409 - DDA3937_RS19775 0.78 -2.3 4,504,430 - DDA3937_RS19775 0.80 +2.9 4,504,475 + DDA3937_RS19775 0.83 +0.0 4,504,475 + DDA3937_RS19775 0.83 -0.6 4,504,475 + DDA3937_RS19775 0.83 -1.4 4,504,476 - DDA3937_RS19775 0.83 +0.1 4,504,637 - -0.4 4,504,801 + +1.6 4,504,801 + +0.2 4,504,802 - -0.7 4,504,802 - -2.4 4,504,838 + -1.3 4,504,840 + -0.3 4,504,840 + +0.4 4,504,840 + +2.7 4,504,840 + +0.3 4,504,841 - +0.5 4,504,841 - +1.6 4,504,881 - -2.1 4,504,915 + +3.4 4,504,915 + +2.9 4,504,915 + +1.8 4,504,916 - -3.4 4,504,944 + -1.6 4,504,959 + -1.4 4,504,960 - +1.3 4,504,960 - -1.7 4,504,962 + -2.6 4,504,963 - -1.4 4,505,254 + DDA3937_RS19780 0.60 +0.0 4,505,380 - DDA3937_RS19780 0.84 -0.8 4,505,394 + DDA3937_RS19780 0.87 -2.2 4,505,475 + +2.0 4,505,475 + -1.7 4,505,833 - DDA3937_RS19785 0.36 -0.4 4,505,886 - DDA3937_RS19785 0.41 -1.6 4,505,916 + +0.6 4,505,916 + DDA3937_RS19785 0.44 -2.1 4,505,917 - DDA3937_RS19785 0.44 -1.2 4,505,949 + -0.4 4,505,950 - DDA3937_RS19785 0.48 +1.5 4,506,117 + DDA3937_RS19785 0.64 +2.8 4,506,169 - DDA3937_RS19785 0.70 -2.1 4,506,169 - DDA3937_RS19785 0.70 -3.8 4,506,329 + +0.6 4,506,330 - DDA3937_RS19785 0.86 -3.0
Or see this region's nucleotide sequence