Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19595 and DDA3937_RS19600 overlap by 4 nucleotides DDA3937_RS19600 and DDA3937_RS19605 are separated by 239 nucleotides DDA3937_RS19605 and DDA3937_RS19610 are separated by 761 nucleotides
DDA3937_RS19595: DDA3937_RS19595 - GMP/IMP nucleotidase, at 4,457,293 to 4,457,997
_RS19595
DDA3937_RS19600: DDA3937_RS19600 - ribosome-associated heat shock protein Hsp15, at 4,457,994 to 4,458,407
_RS19600
DDA3937_RS19605: DDA3937_RS19605 - Hsp33 family molecular chaperone HslO, at 4,458,647 to 4,459,519
_RS19605
DDA3937_RS19610: DDA3937_RS19610 - phosphoenolpyruvate carboxykinase (ATP), at 4,460,281 to 4,461,900
_RS19610
Position (kb) 4458
4459
4460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.705 kb on + strand, within DDA3937_RS19595 at 4457.705 kb on + strand, within DDA3937_RS19595 at 4457.706 kb on - strand at 4457.709 kb on - strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.722 kb on - strand, within DDA3937_RS19595 at 4457.722 kb on - strand, within DDA3937_RS19595 at 4457.725 kb on + strand, within DDA3937_RS19595 at 4457.725 kb on + strand, within DDA3937_RS19595 at 4457.726 kb on - strand, within DDA3937_RS19595 at 4457.753 kb on + strand, within DDA3937_RS19595 at 4457.797 kb on - strand, within DDA3937_RS19595 at 4457.857 kb on + strand, within DDA3937_RS19595 at 4457.857 kb on + strand, within DDA3937_RS19595 at 4457.874 kb on + strand, within DDA3937_RS19595 at 4457.874 kb on + strand, within DDA3937_RS19595 at 4457.875 kb on - strand, within DDA3937_RS19595 at 4457.935 kb on + strand at 4457.935 kb on + strand at 4457.935 kb on + strand at 4457.936 kb on - strand at 4458.117 kb on + strand, within DDA3937_RS19600 at 4458.117 kb on + strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.119 kb on + strand, within DDA3937_RS19600 at 4458.120 kb on - strand, within DDA3937_RS19600 at 4458.152 kb on - strand, within DDA3937_RS19600 at 4458.258 kb on + strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.376 kb on + strand at 4458.377 kb on - strand at 4458.387 kb on - strand at 4458.391 kb on - strand at 4458.391 kb on - strand at 4458.391 kb on - strand at 4458.405 kb on + strand at 4458.405 kb on + strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.542 kb on + strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.593 kb on + strand at 4458.593 kb on + strand at 4458.598 kb on + strand at 4458.646 kb on + strand at 4458.675 kb on - strand at 4458.756 kb on - strand, within DDA3937_RS19605 at 4459.073 kb on + strand, within DDA3937_RS19605 at 4459.283 kb on + strand, within DDA3937_RS19605 at 4459.283 kb on + strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.307 kb on + strand, within DDA3937_RS19605 at 4459.308 kb on - strand, within DDA3937_RS19605 at 4459.308 kb on - strand, within DDA3937_RS19605 at 4459.439 kb on + strand at 4459.439 kb on + strand at 4459.440 kb on - strand at 4459.454 kb on + strand at 4459.455 kb on - strand at 4459.455 kb on - strand at 4459.530 kb on + strand at 4459.605 kb on + strand at 4459.605 kb on + strand at 4459.605 kb on + strand at 4459.613 kb on + strand at 4459.613 kb on + strand at 4459.636 kb on - strand at 4459.720 kb on + strand at 4459.721 kb on - strand at 4459.850 kb on - strand at 4459.888 kb on + strand at 4460.024 kb on + strand at 4460.024 kb on + strand at 4460.025 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.123 kb on - strand at 4460.123 kb on - strand at 4460.123 kb on - strand at 4460.167 kb on + strand at 4460.167 kb on + strand at 4460.167 kb on + strand at 4460.168 kb on - strand at 4460.168 kb on - strand at 4460.168 kb on - strand at 4460.192 kb on - strand at 4460.220 kb on - strand at 4460.225 kb on - strand at 4460.225 kb on - strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.246 kb on + strand at 4460.246 kb on + strand at 4460.247 kb on - strand at 4460.247 kb on - strand at 4460.253 kb on - strand at 4460.253 kb on - strand at 4460.253 kb on - strand at 4460.258 kb on + strand at 4460.259 kb on - strand at 4460.259 kb on - strand at 4460.260 kb on + strand at 4460.261 kb on - strand at 4460.268 kb on + strand at 4460.268 kb on + strand at 4460.269 kb on - strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.289 kb on - strand at 4460.289 kb on - strand at 4460.289 kb on - strand at 4460.298 kb on + strand at 4460.298 kb on + strand at 4460.320 kb on + strand at 4460.320 kb on + strand at 4460.321 kb on - strand at 4460.321 kb on - strand at 4460.321 kb on - strand at 4460.350 kb on + strand at 4460.350 kb on + strand at 4460.351 kb on - strand at 4460.369 kb on + strand at 4460.369 kb on + strand at 4460.399 kb on + strand at 4460.399 kb on + strand at 4460.399 kb on + strand at 4460.400 kb on - strand at 4460.400 kb on - strand at 4460.407 kb on + strand at 4460.407 kb on + strand at 4460.408 kb on - strand at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,457,672 + DDA3937_RS19595 0.54 -1.9 4,457,672 + DDA3937_RS19595 0.54 +0.2 4,457,672 + DDA3937_RS19595 0.54 -1.3 4,457,673 - DDA3937_RS19595 0.54 -0.6 4,457,673 - DDA3937_RS19595 0.54 -1.8 4,457,673 - DDA3937_RS19595 0.54 +0.4 4,457,673 - DDA3937_RS19595 0.54 -1.4 4,457,705 + DDA3937_RS19595 0.58 +3.4 4,457,705 + DDA3937_RS19595 0.58 -2.1 4,457,706 - +1.6 4,457,709 - DDA3937_RS19595 0.59 -0.8 4,457,721 + DDA3937_RS19595 0.61 -1.0 4,457,721 + DDA3937_RS19595 0.61 -1.0 4,457,721 + DDA3937_RS19595 0.61 +1.5 4,457,722 - DDA3937_RS19595 0.61 -0.9 4,457,722 - DDA3937_RS19595 0.61 -0.8 4,457,725 + DDA3937_RS19595 0.61 -0.4 4,457,725 + DDA3937_RS19595 0.61 +0.7 4,457,726 - DDA3937_RS19595 0.61 +0.3 4,457,753 + DDA3937_RS19595 0.65 -2.5 4,457,797 - DDA3937_RS19595 0.71 -1.8 4,457,857 + DDA3937_RS19595 0.80 -1.4 4,457,857 + DDA3937_RS19595 0.80 +0.8 4,457,874 + DDA3937_RS19595 0.82 -2.0 4,457,874 + DDA3937_RS19595 0.82 +0.9 4,457,875 - DDA3937_RS19595 0.83 +1.4 4,457,935 + +1.8 4,457,935 + -1.6 4,457,935 + +1.4 4,457,936 - +1.0 4,458,117 + DDA3937_RS19600 0.30 +0.0 4,458,117 + DDA3937_RS19600 0.30 +0.9 4,458,118 - DDA3937_RS19600 0.30 -2.3 4,458,118 - DDA3937_RS19600 0.30 +0.5 4,458,118 - DDA3937_RS19600 0.30 -2.9 4,458,118 - DDA3937_RS19600 0.30 -0.7 4,458,119 + DDA3937_RS19600 0.30 +1.3 4,458,120 - DDA3937_RS19600 0.30 +1.4 4,458,152 - DDA3937_RS19600 0.38 +1.1 4,458,258 + DDA3937_RS19600 0.64 -0.0 4,458,259 - DDA3937_RS19600 0.64 +0.8 4,458,259 - DDA3937_RS19600 0.64 +1.6 4,458,259 - DDA3937_RS19600 0.64 -1.2 4,458,376 + -1.6 4,458,377 - +0.5 4,458,387 - +0.9 4,458,391 - +1.5 4,458,391 - -2.2 4,458,391 - +2.6 4,458,405 + +1.0 4,458,405 + +1.2 4,458,406 - +1.0 4,458,406 - -2.6 4,458,406 - +0.8 4,458,406 - +0.3 4,458,427 + -1.2 4,458,427 + +0.6 4,458,427 + -1.4 4,458,427 + +0.6 4,458,427 + -2.7 4,458,428 - -2.0 4,458,428 - +2.7 4,458,428 - +1.1 4,458,428 - -2.1 4,458,428 - -0.4 4,458,542 + +0.5 4,458,543 - -2.8 4,458,543 - -2.7 4,458,543 - -0.1 4,458,543 - -0.1 4,458,543 - -1.8 4,458,593 + -0.2 4,458,593 + +2.8 4,458,598 + -2.7 4,458,646 + -2.0 4,458,675 - +1.0 4,458,756 - DDA3937_RS19605 0.12 -1.4 4,459,073 + DDA3937_RS19605 0.49 -1.2 4,459,283 + DDA3937_RS19605 0.73 -2.5 4,459,283 + DDA3937_RS19605 0.73 -2.8 4,459,284 - DDA3937_RS19605 0.73 +0.3 4,459,284 - DDA3937_RS19605 0.73 +0.0 4,459,284 - DDA3937_RS19605 0.73 -2.0 4,459,307 + DDA3937_RS19605 0.76 +0.9 4,459,308 - DDA3937_RS19605 0.76 -1.6 4,459,308 - DDA3937_RS19605 0.76 -2.1 4,459,439 + -1.3 4,459,439 + +0.7 4,459,440 - -3.2 4,459,454 + +0.0 4,459,455 - -1.7 4,459,455 - -2.0 4,459,530 + -1.4 4,459,605 + -0.9 4,459,605 + -0.7 4,459,605 + -1.2 4,459,613 + +2.0 4,459,613 + +2.5 4,459,636 - +1.1 4,459,720 + -0.4 4,459,721 - -2.3 4,459,850 - -2.8 4,459,888 + -1.0 4,460,024 + -2.8 4,460,024 + -0.7 4,460,025 + +0.0 4,460,026 + -0.3 4,460,026 + +1.0 4,460,026 + -3.4 4,460,026 + -2.2 4,460,123 - -0.1 4,460,123 - -0.9 4,460,123 - +1.5 4,460,167 + -2.6 4,460,167 + -1.6 4,460,167 + -0.2 4,460,168 - -1.2 4,460,168 - +0.8 4,460,168 - -0.4 4,460,192 - -1.4 4,460,220 - -2.8 4,460,225 - +1.4 4,460,225 - -2.0 4,460,243 + +0.2 4,460,243 + +0.0 4,460,243 + -1.4 4,460,243 + -0.7 4,460,244 - -0.6 4,460,244 - -2.4 4,460,244 - -0.4 4,460,244 - +0.8 4,460,244 - -0.6 4,460,246 + +0.7 4,460,246 + -0.5 4,460,247 - -1.7 4,460,247 - +1.4 4,460,253 - -2.9 4,460,253 - +1.8 4,460,253 - -0.9 4,460,258 + +1.1 4,460,259 - -2.2 4,460,259 - -1.5 4,460,260 + -1.2 4,460,261 - +0.0 4,460,268 + +1.6 4,460,268 + -1.1 4,460,269 - -2.9 4,460,274 + -0.7 4,460,274 + -1.2 4,460,274 + -3.8 4,460,274 + -2.3 4,460,274 + -0.1 4,460,288 + +2.4 4,460,288 + -0.7 4,460,288 + -1.2 4,460,288 + -0.8 4,460,288 + -1.9 4,460,288 + -3.3 4,460,289 - -0.0 4,460,289 - +0.8 4,460,289 - +1.5 4,460,298 + +1.2 4,460,298 + -0.0 4,460,320 + +0.6 4,460,320 + -0.9 4,460,321 - -1.1 4,460,321 - -2.2 4,460,321 - -1.4 4,460,350 + -1.8 4,460,350 + -1.6 4,460,351 - -3.3 4,460,369 + -4.1 4,460,369 + -1.4 4,460,399 + +2.0 4,460,399 + +0.1 4,460,399 + -1.1 4,460,400 - -0.5 4,460,400 - -0.3 4,460,407 + -2.2 4,460,407 + +0.3 4,460,408 - +0.4 4,460,484 + DDA3937_RS19610 0.13 -0.3 4,460,484 + DDA3937_RS19610 0.13 -1.9 4,460,484 + DDA3937_RS19610 0.13 +0.6 4,460,484 + DDA3937_RS19610 0.13 +1.6 4,460,484 + DDA3937_RS19610 0.13 -1.3 4,460,484 + DDA3937_RS19610 0.13 -1.6 4,460,485 - DDA3937_RS19610 0.13 +1.0 4,460,485 - DDA3937_RS19610 0.13 +1.5 4,460,485 - DDA3937_RS19610 0.13 -0.8 4,460,485 - DDA3937_RS19610 0.13 -2.3 4,460,485 - DDA3937_RS19610 0.13 -2.2 4,460,488 + DDA3937_RS19610 0.13 -0.9 4,460,488 + DDA3937_RS19610 0.13 -1.7 4,460,488 + DDA3937_RS19610 0.13 -2.5 4,460,488 + DDA3937_RS19610 0.13 +0.8 4,460,488 + DDA3937_RS19610 0.13 -1.9 4,460,488 + DDA3937_RS19610 0.13 -1.7 4,460,488 + DDA3937_RS19610 0.13 +1.2 4,460,488 + DDA3937_RS19610 0.13 +0.3 4,460,488 + DDA3937_RS19610 0.13 -3.2 4,460,488 + DDA3937_RS19610 0.13 -0.2 4,460,488 + DDA3937_RS19610 0.13 +0.8 4,460,488 + DDA3937_RS19610 0.13 -1.1 4,460,488 + DDA3937_RS19610 0.13 -2.0 4,460,489 - DDA3937_RS19610 0.13 +1.7 4,460,489 - DDA3937_RS19610 0.13 -0.2 4,460,489 - DDA3937_RS19610 0.13 +0.5 4,460,489 - DDA3937_RS19610 0.13 +0.6 4,460,489 - DDA3937_RS19610 0.13 -0.4 4,460,489 - DDA3937_RS19610 0.13 -2.9 4,460,489 - DDA3937_RS19610 0.13 -2.9 4,460,489 - DDA3937_RS19610 0.13 -0.4 4,460,489 - DDA3937_RS19610 0.13 -2.5 4,460,489 - DDA3937_RS19610 0.13 -2.4 4,460,489 - DDA3937_RS19610 0.13 -0.4 4,460,489 - DDA3937_RS19610 0.13 -1.0
Or see this region's nucleotide sequence