Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19055

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,356,987	+		DDA3937_RS19050	0.48	-2.0
4,356,987	+		DDA3937_RS19050	0.48	+1.0
4,356,988	-		DDA3937_RS19050	0.48	+1.7
4,357,020	-		DDA3937_RS19050	0.49	-2.3
4,357,020	-		DDA3937_RS19050	0.49	-1.6
4,357,131	-		DDA3937_RS19050	0.56	+1.0
4,357,131	-		DDA3937_RS19050	0.56	+0.8
4,357,142	+		DDA3937_RS19050	0.56	-0.3
4,357,143	-		DDA3937_RS19050	0.56	-0.0
4,357,143	-		DDA3937_RS19050	0.56	-1.8
4,357,168	-		DDA3937_RS19050	0.58	+1.3
4,357,168	-		DDA3937_RS19050	0.58	-0.0
4,357,168	-		DDA3937_RS19050	0.58	-0.4
4,357,203	+		DDA3937_RS19050	0.60	-1.3
4,357,204	-		DDA3937_RS19050	0.60	-1.4
4,357,299	+		DDA3937_RS19050	0.65	+0.5
4,357,299	+		DDA3937_RS19050	0.65	+3.6
4,357,304	+		DDA3937_RS19050	0.66	+1.3
4,357,385	+		DDA3937_RS19050	0.70	+0.7
4,357,386	-		DDA3937_RS19050	0.70	-3.5
4,357,386	-		DDA3937_RS19050	0.70	+2.9
4,357,386	-		DDA3937_RS19050	0.70	-0.0
4,357,386	-		DDA3937_RS19050	0.70	-1.3
4,357,575	+		DDA3937_RS19050	0.81	-2.8
4,357,589	+		DDA3937_RS19050	0.82	+2.3
4,357,589	+		DDA3937_RS19050	0.82	-1.0
4,357,590	-		DDA3937_RS19050	0.82	-0.7
4,357,590	-		DDA3937_RS19050	0.82	-1.2
4,357,590	-		DDA3937_RS19050	0.82	+1.1
4,357,631	+		DDA3937_RS19050	0.84	+1.8
4,357,631	+		DDA3937_RS19050	0.84	+1.6
4,357,652	+		DDA3937_RS19050	0.85	+0.4
4,357,652	+		DDA3937_RS19050	0.85	+0.5
4,357,652	+		DDA3937_RS19050	0.85	-1.0
4,357,652	+		DDA3937_RS19050	0.85	-1.5
4,357,652	+		DDA3937_RS19050	0.85	-2.6
4,357,652	+		DDA3937_RS19050	0.85	+0.8
4,357,653	-		DDA3937_RS19050	0.85	+0.2
4,357,653	-		DDA3937_RS19050	0.85	-2.0
4,357,688	+		DDA3937_RS19050	0.87	-2.0
4,357,688	+		DDA3937_RS19050	0.87	-1.5
4,357,748	+				+0.0
4,357,847	+				+0.2
4,357,935	+				-1.2
4,357,935	+				+1.1
4,357,936	-				+1.2
4,357,940	+				-1.7
4,357,940	+				+0.4
4,357,940	+				-0.5
4,357,941	-				+0.4
4,357,941	-				+1.9
4,357,941	-				+0.9
4,357,941	-				+0.8
4,357,941	-				+1.3
4,357,975	-				+0.6
4,358,069	+				-1.5
4,358,070	-				+0.2
4,358,106	+				-0.2
4,358,106	+				-2.3
4,358,106	+				-1.7
4,358,106	+				-0.7
4,358,106	+				-1.4
4,358,106	+				+1.4
4,358,106	+				+0.9
4,358,107	-				+0.6
4,358,107	-				+1.0
4,358,107	-				-2.8
4,358,108	+				-2.9
4,358,109	-				-1.7
4,358,144	-		DDA3937_RS19055	0.12	-0.7
4,358,144	-		DDA3937_RS19055	0.12	+3.2
4,358,156	+		DDA3937_RS19055	0.13	+0.5
4,358,157	-		DDA3937_RS19055	0.13	-0.2
4,358,157	-		DDA3937_RS19055	0.13	-1.7
4,358,183	+		DDA3937_RS19055	0.15	+1.6
4,358,183	+		DDA3937_RS19055	0.15	-1.2
4,358,183	+		DDA3937_RS19055	0.15	-0.5
4,358,184	-		DDA3937_RS19055	0.15	-1.5
4,358,184	-		DDA3937_RS19055	0.15	+3.6
4,358,184	-		DDA3937_RS19055	0.15	-0.4
4,358,184	-		DDA3937_RS19055	0.15	+0.9
4,358,250	-		DDA3937_RS19055	0.20	+0.6
4,358,255	+		DDA3937_RS19055	0.21	+2.9
4,358,255	+		DDA3937_RS19055	0.21	-1.2
4,358,342	+		DDA3937_RS19055	0.27	-2.0
4,358,343	-		DDA3937_RS19055	0.27	-2.7
4,358,453	+		DDA3937_RS19055	0.36	-2.0
4,358,454	-		DDA3937_RS19055	0.36	+1.2
4,358,501	+		DDA3937_RS19055	0.40	-2.8
4,358,501	+		DDA3937_RS19055	0.40	+1.5
4,358,501	+		DDA3937_RS19055	0.40	+1.0
4,358,546	+		DDA3937_RS19055	0.43	-1.5
4,358,592	+		DDA3937_RS19055	0.46	-1.7
4,358,697	+		DDA3937_RS19055	0.55	+0.8
4,358,910	+		DDA3937_RS19055	0.71	-2.4
4,358,910	+		DDA3937_RS19055	0.71	-1.2
4,358,910	+		DDA3937_RS19055	0.71	-1.8
4,358,911	-		DDA3937_RS19055	0.71	-0.7
4,358,911	-		DDA3937_RS19055	0.71	-1.3
4,358,911	-		DDA3937_RS19055	0.71	-2.5
4,358,911	-		DDA3937_RS19055	0.71	-2.0
4,358,911	-		DDA3937_RS19055	0.71	-1.4
4,358,911	-		DDA3937_RS19055	0.71	-2.2
4,358,920	-		DDA3937_RS19055	0.72	-1.1
4,358,920	-		DDA3937_RS19055	0.72	+1.2
4,358,920	-		DDA3937_RS19055	0.72	-0.7
4,358,929	+		DDA3937_RS19055	0.72	-0.4
4,358,930	-		DDA3937_RS19055	0.72	+0.5
4,358,930	-		DDA3937_RS19055	0.72	-0.6
4,358,930	-		DDA3937_RS19055	0.72	-1.5
4,358,955	-		DDA3937_RS19055	0.74	-2.1
4,359,023	+		DDA3937_RS19055	0.79	-2.5
4,359,023	+		DDA3937_RS19055	0.79	-2.5
4,359,023	+		DDA3937_RS19055	0.79	-1.5
4,359,023	+		DDA3937_RS19055	0.79	-0.2
4,359,023	+		DDA3937_RS19055	0.79	-2.7
4,359,024	-		DDA3937_RS19055	0.80	+0.3
4,359,024	-		DDA3937_RS19055	0.80	-2.0
4,359,024	-		DDA3937_RS19055	0.80	-0.7
4,359,024	-		DDA3937_RS19055	0.80	+1.5
4,359,024	-		DDA3937_RS19055	0.80	+1.2
4,359,095	+		DDA3937_RS19055	0.85	+0.1
4,359,111	+		DDA3937_RS19055	0.86	-2.2
4,359,111	+		DDA3937_RS19055	0.86	-1.2
4,359,160	-		DDA3937_RS19055	0.90	+0.0
4,359,160	-		DDA3937_RS19055	0.90	-1.2
4,359,160	-		DDA3937_RS19055	0.90	+4.1
4,359,291	+				+0.7
4,359,316	+				-0.2
4,359,316	+				-1.6
4,359,324	+				-0.4
4,359,324	+				-2.5
4,359,324	+				-0.4
4,359,339	+				+1.3
4,359,483	+		DDA3937_RS19060	0.11	+0.7
4,359,484	-		DDA3937_RS19060	0.11	-2.6
4,359,551	+		DDA3937_RS19060	0.15	-3.8
4,359,552	-		DDA3937_RS19060	0.15	-0.9
4,359,634	+		DDA3937_RS19060	0.20	-2.5
4,359,634	+		DDA3937_RS19060	0.20	-0.0
4,359,634	+		DDA3937_RS19060	0.20	+1.0
4,359,635	-		DDA3937_RS19060	0.20	-1.2
4,359,635	-		DDA3937_RS19060	0.20	+1.5
4,359,635	-		DDA3937_RS19060	0.20	+0.0
4,359,666	-		DDA3937_RS19060	0.22	-1.7
4,359,743	+		DDA3937_RS19060	0.27	-1.7
4,359,743	+		DDA3937_RS19060	0.27	+1.5
4,359,744	-		DDA3937_RS19060	0.27	-0.0
4,360,069	+		DDA3937_RS19060	0.47	-3.5
4,360,079	+		DDA3937_RS19060	0.48	-2.1
4,360,079	+		DDA3937_RS19060	0.48	+1.1
4,360,233	+		DDA3937_RS19060	0.57	-1.0
4,360,233	+		DDA3937_RS19060	0.57	+1.3
4,360,234	-		DDA3937_RS19060	0.57	-3.1
4,360,234	-		DDA3937_RS19060	0.57	-1.0
4,360,234	-		DDA3937_RS19060	0.57	+0.1
4,360,234	-		DDA3937_RS19060	0.57	-1.2
4,360,234	-		DDA3937_RS19060	0.57	+0.2
4,360,283	-		DDA3937_RS19060	0.61	+1.6
4,360,289	-		DDA3937_RS19060	0.61	+0.3