Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18640

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,259,994	-		DDA3937_RS18635	0.45	+1.1
4,260,076	+		DDA3937_RS18635	0.51	+1.1
4,260,077	-		DDA3937_RS18635	0.51	-2.2
4,260,244	+		DDA3937_RS18635	0.61	+0.3
4,260,245	-		DDA3937_RS18635	0.61	-0.5
4,260,247	+		DDA3937_RS18635	0.62	-0.5
4,260,247	+		DDA3937_RS18635	0.62	+0.0
4,260,247	+		DDA3937_RS18635	0.62	-0.7
4,260,247	+		DDA3937_RS18635	0.62	+2.2
4,260,248	-		DDA3937_RS18635	0.62	-3.1
4,260,322	+		DDA3937_RS18635	0.66	-1.6
4,260,323	-		DDA3937_RS18635	0.67	-2.5
4,260,378	+		DDA3937_RS18635	0.70	+1.6
4,260,378	+		DDA3937_RS18635	0.70	-0.9
4,260,378	+		DDA3937_RS18635	0.70	-0.6
4,260,597	+		DDA3937_RS18635	0.84	-1.2
4,260,597	+		DDA3937_RS18635	0.84	-3.4
4,260,597	+		DDA3937_RS18635	0.84	-2.6
4,260,597	+		DDA3937_RS18635	0.84	-0.4
4,260,598	-		DDA3937_RS18635	0.84	-1.9
4,260,703	+				+1.2
4,260,703	+				+0.1
4,260,709	+				+1.1
4,260,709	+				+1.0
4,260,709	+				-1.8
4,260,709	+				-0.3
4,260,710	-				-2.6
4,260,710	-				-3.5
4,260,710	-				+1.1
4,260,710	-				+1.0
4,260,710	-				+3.0
4,260,714	-				-1.0
4,260,729	+				-2.8
4,260,730	-				-1.5
4,260,730	-				+1.7
4,260,730	-				-1.6
4,260,816	+				+0.0
4,260,816	+				+0.6
4,260,863	+				-2.9
4,260,863	+				-2.9
4,260,878	+				+0.5
4,260,878	+				-0.7
4,260,878	+				-0.5
4,260,878	+				-0.4
4,260,879	-				+0.0
4,260,879	-				-2.7
4,260,879	-				+3.4
4,260,879	-				+1.0
4,260,986	+				-1.7
4,260,986	+				-3.4
4,260,987	-				-1.9
4,260,987	-				-2.0
4,260,987	-				-0.4
4,260,987	-				-1.0
4,260,995	+				-2.3
4,260,995	+				-2.0
4,260,995	+				-1.9
4,260,995	+				-1.4
4,260,995	+				+0.1
4,260,995	+				-2.2
4,260,996	-				+0.3
4,260,996	-				-1.0
4,260,996	-				+1.6
4,260,996	-				+1.4
4,260,996	-				-1.4
4,260,996	-				-3.0
4,260,996	-				+1.6
4,260,996	-				-1.9
4,261,023	+				-0.7
4,261,023	+				-1.2
4,261,023	+				-2.5
4,261,023	+				-0.9
4,261,024	-				-1.9
4,261,024	-				-0.6
4,261,028	+				-1.6
4,261,153	-		DDA3937_RS18640	0.24	-1.2
4,261,204	-		DDA3937_RS18640	0.29	-4.4
4,261,204	-		DDA3937_RS18640	0.29	-1.9
4,261,300	+		DDA3937_RS18640	0.40	-2.7
4,261,300	+		DDA3937_RS18640	0.40	-1.2
4,261,301	-		DDA3937_RS18640	0.41	-2.3
4,261,301	-		DDA3937_RS18640	0.41	-2.0
4,261,302	+		DDA3937_RS18640	0.41	-1.0
4,261,302	+		DDA3937_RS18640	0.41	-2.6
4,261,303	-		DDA3937_RS18640	0.41	-1.9
4,261,303	-		DDA3937_RS18640	0.41	+0.8
4,261,336	+		DDA3937_RS18640	0.45	-0.4
4,261,336	+		DDA3937_RS18640	0.45	-0.2
4,261,336	+		DDA3937_RS18640	0.45	+1.1
4,261,336	+		DDA3937_RS18640	0.45	-0.7
4,261,337	-		DDA3937_RS18640	0.45	-1.6
4,261,337	-		DDA3937_RS18640	0.45	+1.6
4,261,337	-		DDA3937_RS18640	0.45	-2.8
4,261,341	+		DDA3937_RS18640	0.45	+1.1
4,261,341	+		DDA3937_RS18640	0.45	-4.4
4,261,342	-		DDA3937_RS18640	0.45	+0.5
4,261,342	-		DDA3937_RS18640	0.45	-0.2
4,261,342	-		DDA3937_RS18640	0.45	+0.4
4,261,342	-		DDA3937_RS18640	0.45	-1.6
4,261,402	+		DDA3937_RS18640	0.52	+1.4
4,261,402	+		DDA3937_RS18640	0.52	-2.0
4,261,402	+		DDA3937_RS18640	0.52	-3.2
4,261,402	+		DDA3937_RS18640	0.52	-2.9
4,261,402	+		DDA3937_RS18640	0.52	-2.3
4,261,402	+		DDA3937_RS18640	0.52	-0.7
4,261,403	-		DDA3937_RS18640	0.52	-0.4
4,261,403	-		DDA3937_RS18640	0.52	-2.7
4,261,403	-		DDA3937_RS18640	0.52	+0.9
4,261,403	-		DDA3937_RS18640	0.52	-0.6
4,261,412	-		DDA3937_RS18640	0.53	-0.7
4,261,426	+		DDA3937_RS18640	0.55	+0.4
4,261,437	-		DDA3937_RS18640	0.56	+0.6
4,261,437	-		DDA3937_RS18640	0.56	-0.6
4,261,440	+		DDA3937_RS18640	0.56	-2.8
4,261,441	-		DDA3937_RS18640	0.57	-1.2
4,261,441	-		DDA3937_RS18640	0.57	-1.0
4,261,455	+		DDA3937_RS18640	0.58	+0.4
4,261,523	+		DDA3937_RS18640	0.66	+2.4
4,261,523	+		DDA3937_RS18640	0.66	+1.8
4,261,523	+		DDA3937_RS18640	0.66	-1.2
4,261,548	+		DDA3937_RS18640	0.69	+3.2
4,261,549	-		DDA3937_RS18640	0.69	-1.6
4,261,549	-		DDA3937_RS18640	0.69	+0.8
4,261,549	-		DDA3937_RS18640	0.69	-1.0
4,261,549	-		DDA3937_RS18640	0.69	-2.8
4,261,549	-		DDA3937_RS18640	0.69	+1.7
4,261,549	-		DDA3937_RS18640	0.69	-2.7
4,261,549	-		DDA3937_RS18640	0.69	+1.0
4,261,549	-		DDA3937_RS18640	0.69	-1.1
4,261,549	-		DDA3937_RS18640	0.69	-0.7
4,261,549	-		DDA3937_RS18640	0.69	-2.9
4,261,550	+		DDA3937_RS18640	0.69	-3.0
4,261,550	+		DDA3937_RS18640	0.69	-1.6
4,261,551	-		DDA3937_RS18640	0.69	-1.6
4,261,551	-		DDA3937_RS18640	0.69	-2.3
4,261,551	-				+0.6
4,261,551	-				-0.7
4,261,603	+		DDA3937_RS18640	0.75	-1.6
4,261,623	+		DDA3937_RS18640	0.77	-0.0
4,261,648	+		DDA3937_RS18640	0.80	-2.0
4,261,649	-		DDA3937_RS18640	0.80	-3.3
4,261,649	-		DDA3937_RS18640	0.80	+3.3
4,261,649	-		DDA3937_RS18640	0.80	+0.6
4,261,649	-		DDA3937_RS18640	0.80	-3.1
4,261,692	+		DDA3937_RS18640	0.85	-0.8
4,261,692	+		DDA3937_RS18640	0.85	-3.2
4,261,693	-		DDA3937_RS18640	0.85	+0.1
4,261,693	-		DDA3937_RS18640	0.85	+0.6
4,261,693	-		DDA3937_RS18640	0.85	-2.1
4,261,693	-		DDA3937_RS18640	0.85	-3.0
4,261,725	+		DDA3937_RS18640	0.89	-1.6
4,261,725	+		DDA3937_RS18640	0.89	+1.0
4,261,725	+		DDA3937_RS18640	0.89	-2.3
4,261,725	+		DDA3937_RS18640	0.89	-1.0
4,261,725	+		DDA3937_RS18640	0.89	-3.3
4,261,725	+		DDA3937_RS18640	0.89	+0.9
4,261,725	+		DDA3937_RS18640	0.89	-1.7
4,261,725	+		DDA3937_RS18640	0.89	-1.9
4,261,725	+		DDA3937_RS18640	0.89	-0.4
4,261,725	+		DDA3937_RS18640	0.89	+0.9
4,261,725	+		DDA3937_RS18640	0.89	-0.0
4,261,726	-		DDA3937_RS18640	0.89	-1.7
4,261,726	-		DDA3937_RS18640	0.89	+2.4
4,261,726	-		DDA3937_RS18640	0.89	-0.8
4,261,726	-		DDA3937_RS18640	0.89	-2.4
4,261,726	-		DDA3937_RS18640	0.89	-3.1
4,261,726	-		DDA3937_RS18640	0.89	+1.0
4,261,726	-		DDA3937_RS18640	0.89	+0.9
4,261,750	+				-2.9
4,261,750	+				-1.1
4,261,750	+				-2.6
4,261,751	-				+0.0
4,261,762	+				-1.4
4,261,762	+				-2.3
4,261,762	+				-2.3
4,261,762	+				-1.4
4,261,857	+				+1.4
4,261,857	+				-2.0
4,261,857	+				+0.4
4,261,857	+				-1.2
4,261,858	-				-0.5
4,261,858	-				+0.3
4,261,858	-				-2.0
4,261,858	-				-3.6
4,261,868	-				-1.0
4,261,889	-				-0.4
4,261,889	-				+2.1
4,261,894	+				-1.2
4,261,895	-				+1.1
4,261,896	+				-3.1
4,261,896	+				+1.2
4,261,896	+				-2.7
4,261,896	+				-0.1
4,261,897	-				+1.7
4,261,897	-				-2.1
4,261,897	-				-1.0
4,261,897	-				+0.7
4,261,898	+				-1.5
4,261,898	+				+1.3
4,261,898	+				+0.6
4,261,898	+				+2.4
4,261,899	-				+3.0
4,261,914	+				-2.9
4,261,914	+				-0.8
4,261,915	-				+0.4
4,261,920	+				-2.9
4,261,959	+				-1.2
4,261,960	-				+0.5
4,261,992	-				+0.1
4,262,002	+				-1.2
4,262,002	+				-2.0
4,262,002	+				+0.3
4,262,002	+				-1.7
4,262,002	+				+1.1
4,262,003	-				+1.6
4,262,003	-				-1.5
4,262,003	-				+0.0
4,262,008	+				+0.8
4,262,093	+				-2.8
4,262,094	-				-2.8
4,262,229	-		DDA3937_RS18645	0.20	-3.1
4,262,229	-		DDA3937_RS18645	0.20	+0.1
4,262,239	+		DDA3937_RS18645	0.21	-2.5
4,262,240	-		DDA3937_RS18645	0.21	-3.2
4,262,268	+		DDA3937_RS18645	0.24	-1.2
4,262,293	+		DDA3937_RS18645	0.26	-1.8
4,262,294	-		DDA3937_RS18645	0.26	-1.0
4,262,328	+		DDA3937_RS18645	0.29	+2.1
4,262,328	+		DDA3937_RS18645	0.29	-1.2
4,262,328	+		DDA3937_RS18645	0.29	-2.6
4,262,328	+		DDA3937_RS18645	0.29	-2.3
4,262,328	+		DDA3937_RS18645	0.29	-2.9
4,262,328	+				+0.0
4,262,329	-		DDA3937_RS18645	0.29	+0.1
4,262,329	-		DDA3937_RS18645	0.29	-1.4
4,262,329	-		DDA3937_RS18645	0.29	-2.1
4,262,329	-		DDA3937_RS18645	0.29	+1.9
4,262,329	-		DDA3937_RS18645	0.29	-2.6
4,262,333	+		DDA3937_RS18645	0.30	-0.2
4,262,350	-		DDA3937_RS18645	0.31	-0.1
4,262,350	-		DDA3937_RS18645	0.31	+0.2
4,262,578	-		DDA3937_RS18645	0.51	-2.5
4,262,598	+		DDA3937_RS18645	0.53	+1.0
4,262,598	+		DDA3937_RS18645	0.53	-0.5
4,262,598	+		DDA3937_RS18645	0.53	-1.0
4,262,598	+		DDA3937_RS18645	0.53	-3.3
4,262,598	+		DDA3937_RS18645	0.53	+0.6
4,262,598	+		DDA3937_RS18645	0.53	-0.1
4,262,598	+		DDA3937_RS18645	0.53	-2.1
4,262,598	+		DDA3937_RS18645	0.53	+0.0
4,262,599	-				+0.0
4,262,629	+		DDA3937_RS18645	0.56	-1.7
4,262,629	+		DDA3937_RS18645	0.56	-1.8
4,262,630	-		DDA3937_RS18645	0.56	+2.6
4,262,630	-		DDA3937_RS18645	0.56	-0.0
4,262,631	+		DDA3937_RS18645	0.56	-1.1
4,262,631	+		DDA3937_RS18645	0.56	+1.2
4,262,631	+		DDA3937_RS18645	0.56	-1.6
4,262,631	+		DDA3937_RS18645	0.56	+0.6
4,262,631	+		DDA3937_RS18645	0.56	-1.9
4,262,632	-		DDA3937_RS18645	0.56	+0.8
4,262,632	-		DDA3937_RS18645	0.56	-0.1
4,262,632	-		DDA3937_RS18645	0.56	-1.4
4,262,632	-		DDA3937_RS18645	0.56	-1.0
4,262,632	-		DDA3937_RS18645	0.56	+1.3
4,262,667	+		DDA3937_RS18645	0.59	-1.2
4,262,667	+		DDA3937_RS18645	0.59	+0.8
4,262,725	+		DDA3937_RS18645	0.64	-1.7
4,262,725	+		DDA3937_RS18645	0.64	-2.5
4,262,726	-		DDA3937_RS18645	0.64	+1.6
4,262,726	-		DDA3937_RS18645	0.64	-0.4
4,262,814	-		DDA3937_RS18645	0.72	+0.9
4,262,814	-		DDA3937_RS18645	0.72	+2.1
4,262,814	-		DDA3937_RS18645	0.72	-1.6
4,262,814	-		DDA3937_RS18645	0.72	-2.0