Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,241,318	+				-3.1
4,241,319	-				-2.1
4,241,319	-				-2.7
4,241,379	+				+0.9
4,241,380	-				-2.7
4,241,428	+				+0.3
4,241,557	+		DDA3937_RS18545	0.23	-0.6
4,241,557	+		DDA3937_RS18545	0.23	-1.7
4,241,558	-		DDA3937_RS18545	0.23	-1.9
4,241,558	-		DDA3937_RS18545	0.23	-1.1
4,241,693	+		DDA3937_RS18545	0.49	-1.4
4,241,693	+		DDA3937_RS18545	0.49	-2.3
4,241,693	+		DDA3937_RS18545	0.49	+1.6
4,241,695	+		DDA3937_RS18545	0.50	+0.2
4,241,695	+		DDA3937_RS18545	0.50	-1.7
4,241,695	+		DDA3937_RS18545	0.50	-1.4
4,241,897	-		DDA3937_RS18545	0.89	-0.4
4,241,950	+				-1.6
4,241,950	+				-1.4
4,241,951	-				-0.8
4,242,002	+				+0.4
4,242,002	+				+1.2
4,242,003	-				+1.3
4,242,014	-				-0.4
4,242,014	-				-1.2
4,242,051	+				+2.0
4,242,051	+				-0.7
4,242,051	+				+1.8
4,242,051	+				-2.7
4,242,051	+				+2.5
4,242,051	+				-0.7
4,242,129	+		DDA3937_RS18550	0.11	-1.7
4,242,129	+		DDA3937_RS18550	0.11	+0.6
4,242,129	+				-0.7
4,242,129	+		DDA3937_RS18550	0.11	-3.2
4,242,130	-		DDA3937_RS18550	0.11	+2.0
4,242,130	-		DDA3937_RS18550	0.11	+2.4
4,242,136	-		DDA3937_RS18550	0.12	-0.4
4,242,136	-		DDA3937_RS18550	0.12	-2.9
4,242,190	+		DDA3937_RS18550	0.20	+3.2
4,242,190	+		DDA3937_RS18550	0.20	+2.1
4,242,190	+		DDA3937_RS18550	0.20	-2.2
4,242,190	+		DDA3937_RS18550	0.20	+0.0
4,242,190	+		DDA3937_RS18550	0.20	+2.3
4,242,191	-		DDA3937_RS18550	0.20	+3.9
4,242,191	-		DDA3937_RS18550	0.20	+2.3
4,242,191	-		DDA3937_RS18550	0.20	+2.5
4,242,191	-		DDA3937_RS18550	0.20	-0.4
4,242,191	-		DDA3937_RS18550	0.20	+1.5
4,242,191	-		DDA3937_RS18550	0.20	+2.5
4,242,201	+		DDA3937_RS18550	0.21	+2.5
4,242,201	+		DDA3937_RS18550	0.21	+0.7
4,242,201	+				+2.2
4,242,201	+		DDA3937_RS18550	0.21	-1.9
4,242,201	+		DDA3937_RS18550	0.21	+0.3
4,242,201	+		DDA3937_RS18550	0.21	-0.7
4,242,201	+		DDA3937_RS18550	0.21	+2.8
4,242,202	-		DDA3937_RS18550	0.21	+2.7
4,242,202	-		DDA3937_RS18550	0.21	+0.0
4,242,372	+		DDA3937_RS18550	0.46	-1.2
4,242,372	+		DDA3937_RS18550	0.46	-2.0
4,242,372	+		DDA3937_RS18550	0.46	+1.1
4,242,373	-		DDA3937_RS18550	0.46	+1.8
4,242,373	-		DDA3937_RS18550	0.46	+3.7
4,242,385	+		DDA3937_RS18550	0.48	+2.4
4,242,395	+		DDA3937_RS18550	0.49	+2.7
4,242,396	-		DDA3937_RS18550	0.49	-1.4
4,242,416	+		DDA3937_RS18550	0.52	+2.9
4,242,416	+		DDA3937_RS18550	0.52	-3.3
4,242,416	+		DDA3937_RS18550	0.52	-1.7
4,242,416	+		DDA3937_RS18550	0.52	+2.5
4,242,416	+		DDA3937_RS18550	0.52	-3.2
4,242,416	+		DDA3937_RS18550	0.52	+1.5
4,242,416	+		DDA3937_RS18550	0.52	+1.7
4,242,416	+		DDA3937_RS18550	0.52	+2.4
4,242,417	-		DDA3937_RS18550	0.52	-1.9
4,242,417	-		DDA3937_RS18550	0.52	-2.7
4,242,417	-		DDA3937_RS18550	0.52	+2.5
4,242,459	+		DDA3937_RS18550	0.58	-2.5
4,242,459	+		DDA3937_RS18550	0.58	+1.8
4,242,459	+		DDA3937_RS18550	0.58	-1.7
4,242,459	+		DDA3937_RS18550	0.58	-1.2
4,242,459	+		DDA3937_RS18550	0.58	-0.3
4,242,463	+		DDA3937_RS18550	0.59	+0.0
4,242,463	+		DDA3937_RS18550	0.59	-2.5
4,242,463	+		DDA3937_RS18550	0.59	-1.4
4,242,463	+		DDA3937_RS18550	0.59	+2.4
4,242,463	+		DDA3937_RS18550	0.59	+3.0
4,242,464	-		DDA3937_RS18550	0.59	+2.5
4,242,464	-		DDA3937_RS18550	0.59	+2.0
4,242,464	-		DDA3937_RS18550	0.59	+0.7
4,242,464	-				-0.4
4,242,464	-		DDA3937_RS18550	0.59	+2.5
4,242,464	-		DDA3937_RS18550	0.59	-1.4
4,242,464	-		DDA3937_RS18550	0.59	+1.8
4,242,464	-		DDA3937_RS18550	0.59	+0.9
4,242,464	-		DDA3937_RS18550	0.59	+3.0
4,242,522	+		DDA3937_RS18550	0.67	-1.7
4,242,577	+		DDA3937_RS18550	0.75	+1.8
4,242,577	+		DDA3937_RS18550	0.75	-2.7
4,242,578	-		DDA3937_RS18550	0.75	-1.2
4,242,578	-		DDA3937_RS18550	0.75	-0.4
4,242,578	-		DDA3937_RS18550	0.75	-1.9
4,242,578	-		DDA3937_RS18550	0.75	-2.0
4,242,578	-		DDA3937_RS18550	0.75	-0.6
4,242,583	+		DDA3937_RS18550	0.76	+2.0
4,242,583	+		DDA3937_RS18550	0.76	+0.3
4,242,583	+		DDA3937_RS18550	0.76	-2.1
4,242,584	-		DDA3937_RS18550	0.76	-2.3
4,242,584	-		DDA3937_RS18550	0.76	-2.5
4,242,584	-		DDA3937_RS18550	0.76	-1.7
4,242,584	-		DDA3937_RS18550	0.76	+0.0
4,242,599	-		DDA3937_RS18550	0.78	-0.4
4,242,599	-		DDA3937_RS18550	0.78	-2.0
4,242,705	-				-1.0
4,242,724	+				-1.2
4,242,724	+				-1.6
4,242,724	+				-0.7
4,242,724	+				+2.8
4,242,725	-				-1.7
4,242,725	-				-1.1
4,242,725	-				+0.6
4,242,761	+				-3.9
4,242,762	-				-0.7
4,242,762	-				-1.1
4,242,762	-				-2.1
4,242,764	+				-2.1
4,242,764	+				-0.2
4,242,764	+				-3.9
4,242,764	+				+2.2
4,242,765	-				+1.1
4,242,765	-				-1.2
4,242,765	-				-2.5
4,242,765	-				+2.2
4,242,781	+				+0.8
4,242,782	-				-2.9
4,242,782	-				-1.4
4,242,783	+				+0.9
4,242,783	+				+0.6
4,242,783	+				-1.7
4,242,783	+				-1.5
4,242,783	+				-0.7
4,242,783	+				-1.4
4,242,783	+				-2.2
4,242,783	+				+1.2
4,242,783	+				+0.5
4,242,784	-				+0.7
4,242,784	-				-1.9
4,242,784	-				-2.8
4,242,784	-				-1.3
4,242,784	-				+0.0
4,242,864	+				+0.1
4,242,864	+				+0.5
4,242,864	+				+1.2
4,242,875	+				-2.0
4,242,876	-				-1.2
4,242,876	-				+2.3
4,242,876	-				-3.3
4,242,876	-				+0.9
4,242,876	-				+3.4