Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18425

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,209,991	+		DDA3937_RS18420	0.53	-0.8
4,209,991	+		DDA3937_RS18420	0.53	-0.0
4,210,061	+		DDA3937_RS18420	0.63	-3.6
4,210,061	+		DDA3937_RS18420	0.63	-2.5
4,210,061	+		DDA3937_RS18420	0.63	+0.1
4,210,062	-				+0.5
4,210,064	+		DDA3937_RS18420	0.63	-1.6
4,210,064	+		DDA3937_RS18420	0.63	+0.6
4,210,065	-		DDA3937_RS18420	0.63	+1.0
4,210,104	+		DDA3937_RS18420	0.69	-2.3
4,210,150	+		DDA3937_RS18420	0.75	+0.8
4,210,150	+		DDA3937_RS18420	0.75	-4.5
4,210,313	+				-1.3
4,210,313	+				+0.4
4,210,313	+				-0.2
4,210,314	-				-0.0
4,210,338	-				-2.8
4,210,379	+				+0.5
4,210,502	+				+0.1
4,210,502	+				-0.8
4,210,503	-				-1.0
4,210,503	-				+0.1
4,210,519	+				-0.8
4,210,530	+				+0.3
4,210,540	+				-2.2
4,210,541	-				-2.9
4,210,586	+				+0.5
4,210,586	+				+1.9
4,210,586	+				+1.2
4,210,586	+				+1.8
4,210,587	-				+1.0
4,210,587	-				-0.5
4,210,601	+				+2.5
4,210,601	+				-0.8
4,210,602	-				-1.4
4,210,604	-				-3.5
4,210,604	-				-2.9
4,210,620	-				-2.9
4,210,620	-				-1.9
4,210,654	+				+1.6
4,210,654	+				-0.5
4,210,655	-				-4.1
4,210,655	-				-2.0
4,210,655	-				-2.3
4,210,655	-				-4.0
4,210,665	+				-1.6
4,210,665	+				+0.7
4,210,666	-				-1.3
4,210,668	+				-0.7
4,210,668	+				-1.3
4,210,669	-				-0.5
4,210,669	-				-2.5
4,210,675	-				+0.8
4,210,691	+				-1.3
4,210,691	+				-1.9
4,210,691	+				+1.0
4,210,691	+				+0.9
4,210,691	+				-0.3
4,210,724	+				-3.5
4,210,764	+				+1.5
4,210,768	+				-3.3
4,210,768	+				-0.9
4,210,768	+				-2.3
4,210,768	+				-0.3
4,210,768	+				+0.1
4,210,768	+				-2.0
4,210,769	-				+0.0
4,210,769	-				-1.8
4,210,769	-				-0.8
4,210,772	+				+1.2
4,210,772	+				-1.0
4,210,773	-				+1.1
4,210,773	-				-0.3
4,210,773	-				-1.6
4,210,773	-				-2.1
4,210,842	+				-1.6
4,210,842	+				-0.5
4,210,842	+				-1.6
4,210,842	+				-1.0
4,210,842	+				-0.0
4,210,842	+				-4.1
4,210,843	-				+1.2
4,210,856	+				-0.9
4,210,856	+				-1.0
4,210,856	+				+0.3
4,210,856	+				+0.1
4,210,856	+				+0.5
4,210,857	-				-3.8
4,210,857	-				-2.6
4,210,857	-				-0.5
4,210,858	+				-1.0
4,210,858	+				+0.1
4,210,859	-				+2.4
4,210,861	+				-0.6
4,210,861	+				+0.0
4,210,861	+				-0.2
4,210,861	+				-0.4
4,210,861	+				-0.8
4,210,862	-				-4.6
4,210,862	-				+0.4
4,210,862	-				+1.8
4,210,862	-				-1.8
4,210,862	-				-2.4
4,210,862	-				-1.3
4,210,862	-				-2.7
4,210,862	-				+2.2
4,210,878	+				+2.2
4,210,879	-				-2.0
4,210,906	+				-2.5
4,210,906	+				-1.0
4,210,906	+				-2.3
4,210,906	+				+0.4
4,210,906	+				+1.5
4,210,906	+				-1.0
4,210,906	+				-0.8
4,210,907	-				+1.5
4,210,907	-				+1.0
4,210,911	+				-3.3
4,210,912	-				-0.4
4,210,926	+				-2.1
4,210,934	-				-3.8
4,210,967	+		DDA3937_RS18425	0.11	+0.6
4,210,968	-		DDA3937_RS18425	0.11	-2.2
4,210,968	-		DDA3937_RS18425	0.11	-2.1
4,210,968	-		DDA3937_RS18425	0.11	-2.2
4,210,968	-		DDA3937_RS18425	0.11	-2.0
4,210,968	-		DDA3937_RS18425	0.11	-1.5
4,211,005	+		DDA3937_RS18425	0.17	-0.0
4,211,006	-		DDA3937_RS18425	0.17	-2.4
4,211,006	-		DDA3937_RS18425	0.17	-0.4
4,211,041	+		DDA3937_RS18425	0.22	-1.8
4,211,183	+		DDA3937_RS18425	0.41	-0.1
4,211,183	+		DDA3937_RS18425	0.41	-0.3
4,211,183	+		DDA3937_RS18425	0.41	+0.3
4,211,183	+		DDA3937_RS18425	0.41	-0.0
4,211,184	-		DDA3937_RS18425	0.42	+2.3
4,211,184	-		DDA3937_RS18425	0.42	-3.9
4,211,184	-		DDA3937_RS18425	0.42	-1.6
4,211,185	+		DDA3937_RS18425	0.42	+0.9
4,211,185	+		DDA3937_RS18425	0.42	-1.0
4,211,185	+		DDA3937_RS18425	0.42	+0.3
4,211,185	+		DDA3937_RS18425	0.42	+0.4
4,211,185	+		DDA3937_RS18425	0.42	-1.5
4,211,185	+		DDA3937_RS18425	0.42	-1.3
4,211,185	+		DDA3937_RS18425	0.42	-1.0
4,211,185	+		DDA3937_RS18425	0.42	-1.5
4,211,186	-		DDA3937_RS18425	0.42	+0.3
4,211,186	-		DDA3937_RS18425	0.42	+0.2
4,211,186	-		DDA3937_RS18425	0.42	-2.8
4,211,294	+		DDA3937_RS18425	0.57	-1.3
4,211,321	-		DDA3937_RS18425	0.61	-0.7
4,211,360	+		DDA3937_RS18425	0.66	+0.0
4,211,557	+				+1.0
4,211,558	-				-2.3
4,211,616	+				-1.0
4,211,616	+				-1.1
4,211,616	+				+0.6
4,211,617	-				+0.2
4,211,617	-				-1.4
4,211,630	-				-1.5
4,211,634	-				-0.3
4,211,662	+				+1.6
4,211,663	-				-4.2
4,211,701	+				-1.8
4,211,701	+				-0.8
4,211,702	-				+0.6
4,211,720	+				-0.9
4,211,721	-				+0.7
4,211,773	+		DDA3937_RS18430	0.15	-2.9
4,211,871	-		DDA3937_RS18430	0.36	-1.4
4,211,871	-		DDA3937_RS18430	0.36	-0.2
4,211,871	-		DDA3937_RS18430	0.36	-0.0
4,211,892	-				+1.6
4,211,951	+		DDA3937_RS18430	0.53	-2.6
4,211,951	+		DDA3937_RS18430	0.53	-1.8
4,212,081	-		DDA3937_RS18430	0.80	-1.4
4,212,081	-		DDA3937_RS18430	0.80	+0.7
4,212,081	-		DDA3937_RS18430	0.80	-1.0
4,212,089	+		DDA3937_RS18430	0.82	-2.1
4,212,126	+				-4.1
4,212,126	+				-2.0
4,212,127	-				-1.2
4,212,127	-				-1.2
4,212,127	-				-0.4
4,212,127	-				+1.5
4,212,210	-				-1.2
4,212,241	+				-0.4
4,212,242	-				-1.0
4,212,252	-				+1.1
4,212,259	+				-1.6
4,212,260	-				+1.5
4,212,260	-				-2.4
4,212,260	-				-4.0
4,212,260	-				-1.3
4,212,260	-				+0.2
4,212,265	-				+0.5
4,212,277	+				-2.0
4,212,278	-				+1.0
4,212,279	+				-1.2
4,212,279	+				-1.8
4,212,279	+				-0.8
4,212,279	+				-3.6
4,212,279	+				-0.0
4,212,279	+				-3.0
4,212,280	-				+0.5
4,212,280	-				-3.2
4,212,280	-				+1.2
4,212,280	-				+0.6
4,212,280	-				+2.0
4,212,280	-				+0.3
4,212,280	-				+2.6
4,212,283	+				+0.2
4,212,284	-				-2.4
4,212,284	-				-0.9
4,212,284	-				+2.8
4,212,284	-				+0.3
4,212,284	-				-1.0
4,212,284	-				+1.5
4,212,284	-				-2.3
4,212,284	-				-0.0
4,212,284	-				+1.4
4,212,284	-				-2.3
4,212,303	-				+1.2
4,212,303	-				+3.7
4,212,303	-				-2.0
4,212,326	+				-0.4
4,212,327	-				+1.0
4,212,327	-				+1.4
4,212,327	-				+1.3
4,212,327	-				+0.1
4,212,327	-				+1.0
4,212,327	-				+1.3
4,212,327	-				-0.5
4,212,327	-				+1.8
4,212,327	-				-2.6
4,212,330	-				+0.5
4,212,330	-				+1.2
4,212,330	-				-0.0
4,212,341	-				-0.2
4,212,341	-				-1.0
4,212,343	-				+1.6
4,212,343	-				+1.6
4,212,343	-				+1.5
4,212,343	-				+1.8
4,212,343	-				+0.5
4,212,343	-				-0.9
4,212,348	+				+2.0
4,212,348	+				+0.6
4,212,348	+				-1.0
4,212,348	+				-1.0
4,212,349	-				+1.0
4,212,349	-				-2.3
4,212,349	-				+1.0
4,212,349	-				-0.3
4,212,349	-				+2.0
4,212,349	-				-0.8
4,212,349	-				+0.8
4,212,349	-				+2.9
4,212,349	-				+1.0
4,212,366	-				+1.2
4,212,366	-				-1.0
4,212,378	+				+1.3
4,212,378	+				-3.2
4,212,378	+				-3.3
4,212,378	+				-0.3
4,212,378	+				+1.9
4,212,378	+				-0.3
4,212,378	+				-0.2
4,212,378	+				-1.2
4,212,379	-				-2.7
4,212,393	+				+1.5
4,212,394	-				-2.3
4,212,394	-				+1.0
4,212,398	+				+0.6
4,212,398	+				+2.9
4,212,398	+				+0.2
4,212,398	+				+0.3
4,212,398	+				+1.8
4,212,398	+				+1.4
4,212,398	+				+1.4
4,212,399	-				+3.1
4,212,399	-				+0.8
4,212,399	-				+2.1
4,212,399	-				+1.0
4,212,399	-				-2.5
4,212,399	-				+0.7
4,212,399	-				-1.4
4,212,399	-				+1.4
4,212,399	-				-2.5
4,212,453	+				-0.1
4,212,453	+				+0.8
4,212,454	-				+0.3
4,212,512	+		DDA3937_RS18435	0.15	+1.2
4,212,512	+		DDA3937_RS18435	0.15	-1.8
4,212,535	+		DDA3937_RS18435	0.18	-1.7
4,212,535	+		DDA3937_RS18435	0.18	+0.6
4,212,535	+		DDA3937_RS18435	0.18	-1.0
4,212,535	+		DDA3937_RS18435	0.18	-2.7
4,212,535	+		DDA3937_RS18435	0.18	+1.2
4,212,535	+		DDA3937_RS18435	0.18	+0.6
4,212,535	+		DDA3937_RS18435	0.18	-0.6
4,212,535	+		DDA3937_RS18435	0.18	+0.7
4,212,535	+		DDA3937_RS18435	0.18	-0.4
4,212,536	-		DDA3937_RS18435	0.18	-1.6
4,212,536	-		DDA3937_RS18435	0.18	+1.0