Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18395

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18390 and DDA3937_RS18395 are separated by 30 nucleotidesDDA3937_RS18395 and DDA3937_RS23345 are separated by 24 nucleotidesDDA3937_RS23345 and DDA3937_RS18400 are separated by 30 nucleotides DDA3937_RS18390: DDA3937_RS18390 - GGDEF domain-containing protein, at 4,201,155 to 4,202,297 _RS18390 DDA3937_RS18395: DDA3937_RS18395 - transaldolase, at 4,202,328 to 4,203,281 _RS18395 DDA3937_RS23345: DDA3937_RS23345 - hypothetical protein, at 4,203,306 to 4,203,554 _RS23345 DDA3937_RS18400: DDA3937_RS18400 - peroxide stress protein YaaA, at 4,203,585 to 4,204,364 _RS18400 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4201.329 kb on + strand, within DDA3937_RS18390at 4201.329 kb on + strand, within DDA3937_RS18390at 4201.329 kb on + strand, within DDA3937_RS18390at 4201.330 kb on - strand, within DDA3937_RS18390at 4201.330 kb on - strand, within DDA3937_RS18390at 4201.330 kb on - strand, within DDA3937_RS18390at 4201.331 kb on + strand, within DDA3937_RS18390at 4201.331 kb on + strand, within DDA3937_RS18390at 4201.331 kb on + strand, within DDA3937_RS18390at 4201.331 kb on + strand, within DDA3937_RS18390at 4201.332 kb on - strand, within DDA3937_RS18390at 4201.332 kb on - strand, within DDA3937_RS18390at 4201.332 kb on - strand, within DDA3937_RS18390at 4201.368 kb on + strand, within DDA3937_RS18390at 4201.369 kb on - strand, within DDA3937_RS18390at 4201.583 kb on + strand, within DDA3937_RS18390at 4201.597 kb on + strand, within DDA3937_RS18390at 4201.597 kb on + strand, within DDA3937_RS18390at 4201.597 kb on + strand, within DDA3937_RS18390at 4201.598 kb on - strand, within DDA3937_RS18390at 4201.598 kb on - strand, within DDA3937_RS18390at 4201.598 kb on - strand, within DDA3937_RS18390at 4201.598 kb on - strand, within DDA3937_RS18390at 4201.603 kb on + strand, within DDA3937_RS18390at 4201.603 kb on + strand, within DDA3937_RS18390at 4201.604 kb on - strand, within DDA3937_RS18390at 4201.638 kb on - strand, within DDA3937_RS18390at 4201.644 kb on - strand, within DDA3937_RS18390at 4201.644 kb on - strand, within DDA3937_RS18390at 4201.649 kb on + strand, within DDA3937_RS18390at 4201.650 kb on - strand, within DDA3937_RS18390at 4201.650 kb on - strand, within DDA3937_RS18390at 4201.738 kb on - strand, within DDA3937_RS18390at 4201.738 kb on - strand, within DDA3937_RS18390at 4202.096 kb on + strand, within DDA3937_RS18390at 4202.096 kb on + strand, within DDA3937_RS18390at 4202.097 kb on - strand, within DDA3937_RS18390at 4202.124 kb on - strand, within DDA3937_RS18390at 4202.124 kb on - strand, within DDA3937_RS18390at 4202.205 kb on + strandat 4202.206 kb on - strandat 4202.206 kb on - strandat 4202.329 kb on + strandat 4202.330 kb on - strandat 4202.488 kb on + strand, within DDA3937_RS18395at 4202.488 kb on + strand, within DDA3937_RS18395at 4202.488 kb on + strand, within DDA3937_RS18395at 4202.489 kb on - strand, within DDA3937_RS18395at 4202.489 kb on - strand, within DDA3937_RS18395at 4202.489 kb on - strand, within DDA3937_RS18395at 4202.644 kb on + strand, within DDA3937_RS18395at 4202.644 kb on + strand, within DDA3937_RS18395at 4202.647 kb on + strand, within DDA3937_RS18395at 4202.647 kb on + strand, within DDA3937_RS18395at 4202.648 kb on - strand, within DDA3937_RS18395at 4202.648 kb on - strand, within DDA3937_RS18395at 4202.654 kb on - strand, within DDA3937_RS18395at 4202.654 kb on - strand, within DDA3937_RS18395at 4202.726 kb on - strand, within DDA3937_RS18395at 4202.726 kb on - strand, within DDA3937_RS18395at 4202.822 kb on + strand, within DDA3937_RS18395at 4202.822 kb on + strand, within DDA3937_RS18395at 4202.864 kb on + strand, within DDA3937_RS18395at 4202.927 kb on - strand, within DDA3937_RS18395at 4202.927 kb on - strand, within DDA3937_RS18395at 4202.974 kb on + strand, within DDA3937_RS18395at 4203.045 kb on - strand, within DDA3937_RS18395at 4203.045 kb on - strand, within DDA3937_RS18395at 4203.202 kb on + strandat 4203.203 kb on - strandat 4203.341 kb on + strand, within DDA3937_RS23345at 4203.341 kb on + strand, within DDA3937_RS23345at 4203.341 kb on + strand, within DDA3937_RS23345at 4203.342 kb on - strand, within DDA3937_RS23345at 4203.345 kb on - strand, within DDA3937_RS23345at 4203.345 kb on - strand, within DDA3937_RS23345at 4203.356 kb on - strand, within DDA3937_RS23345at 4203.416 kb on - strand, within DDA3937_RS23345at 4203.502 kb on + strand, within DDA3937_RS23345at 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.553 kb on - strandat 4203.553 kb on - strandat 4203.579 kb on - strandat 4203.584 kb on + strandat 4203.584 kb on + strandat 4203.585 kb on - strandat 4203.621 kb on + strandat 4203.649 kb on - strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.911 kb on + strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.927 kb on + strand, within DDA3937_RS18400at 4204.014 kb on + strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.108 kb on - strand, within DDA3937_RS18400at 4204.150 kb on + strand, within DDA3937_RS18400at 4204.151 kb on - strand, within DDA3937_RS18400at 4204.204 kb on - strand, within DDA3937_RS18400

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,201,329 + DDA3937_RS18390 0.15 -2.1
4,201,329 + DDA3937_RS18390 0.15 +0.3
4,201,329 + DDA3937_RS18390 0.15 -0.2
4,201,330 - DDA3937_RS18390 0.15 +1.3
4,201,330 - DDA3937_RS18390 0.15 -0.6
4,201,330 - DDA3937_RS18390 0.15 -2.8
4,201,331 + DDA3937_RS18390 0.15 +1.0
4,201,331 + DDA3937_RS18390 0.15 -1.8
4,201,331 + DDA3937_RS18390 0.15 -0.4
4,201,331 + DDA3937_RS18390 0.15 +1.4
4,201,332 - DDA3937_RS18390 0.15 -1.5
4,201,332 - DDA3937_RS18390 0.15 -2.9
4,201,332 - DDA3937_RS18390 0.15 -0.5
4,201,368 + DDA3937_RS18390 0.19 -4.4
4,201,369 - DDA3937_RS18390 0.19 -1.5
4,201,583 + DDA3937_RS18390 0.37 -2.1
4,201,597 + DDA3937_RS18390 0.39 -2.1
4,201,597 + DDA3937_RS18390 0.39 +3.6
4,201,597 + DDA3937_RS18390 0.39 +0.5
4,201,598 - DDA3937_RS18390 0.39 +0.9
4,201,598 - DDA3937_RS18390 0.39 +0.4
4,201,598 - DDA3937_RS18390 0.39 +0.2
4,201,598 - DDA3937_RS18390 0.39 -0.9
4,201,603 + DDA3937_RS18390 0.39 -3.3
4,201,603 + DDA3937_RS18390 0.39 +1.0
4,201,604 - DDA3937_RS18390 0.39 -2.4
4,201,638 - DDA3937_RS18390 0.42 +0.3
4,201,644 - DDA3937_RS18390 0.43 +1.4
4,201,644 - DDA3937_RS18390 0.43 +2.9
4,201,649 + DDA3937_RS18390 0.43 +0.1
4,201,650 - DDA3937_RS18390 0.43 -0.8
4,201,650 - DDA3937_RS18390 0.43 +0.8
4,201,738 - DDA3937_RS18390 0.51 +1.0
4,201,738 - DDA3937_RS18390 0.51 -2.7
4,202,096 + DDA3937_RS18390 0.82 +0.5
4,202,096 + DDA3937_RS18390 0.82 -2.2
4,202,097 - DDA3937_RS18390 0.82 +0.7
4,202,124 - DDA3937_RS18390 0.85 -0.6
4,202,124 - DDA3937_RS18390 0.85 -2.1
4,202,205 + -1.1
4,202,206 - +0.5
4,202,206 - -2.8
4,202,329 + -1.5
4,202,330 - -0.1
4,202,488 + DDA3937_RS18395 0.17 -3.4
4,202,488 + DDA3937_RS18395 0.17 -2.9
4,202,488 + DDA3937_RS18395 0.17 -0.9
4,202,489 - DDA3937_RS18395 0.17 -1.9
4,202,489 - DDA3937_RS18395 0.17 -0.5
4,202,489 - DDA3937_RS18395 0.17 -0.8
4,202,644 + DDA3937_RS18395 0.33 -3.2
4,202,644 + DDA3937_RS18395 0.33 -1.1
4,202,647 + DDA3937_RS18395 0.33 +0.3
4,202,647 + DDA3937_RS18395 0.33 -1.3
4,202,648 - DDA3937_RS18395 0.34 -1.3
4,202,648 - DDA3937_RS18395 0.34 -4.2
4,202,654 - DDA3937_RS18395 0.34 -0.5
4,202,654 - DDA3937_RS18395 0.34 -2.9
4,202,726 - DDA3937_RS18395 0.42 -0.2
4,202,726 - DDA3937_RS18395 0.42 -0.1
4,202,822 + DDA3937_RS18395 0.52 +1.5
4,202,822 + DDA3937_RS18395 0.52 -3.1
4,202,864 + DDA3937_RS18395 0.56 -2.6
4,202,927 - DDA3937_RS18395 0.63 -2.5
4,202,927 - DDA3937_RS18395 0.63 -0.5
4,202,974 + DDA3937_RS18395 0.68 -1.6
4,203,045 - DDA3937_RS18395 0.75 -0.8
4,203,045 - DDA3937_RS18395 0.75 -1.5
4,203,202 + -2.2
4,203,203 - +0.4
4,203,341 + DDA3937_RS23345 0.14 -3.8
4,203,341 + DDA3937_RS23345 0.14 -2.8
4,203,341 + DDA3937_RS23345 0.14 +2.5
4,203,342 - DDA3937_RS23345 0.14 -1.3
4,203,345 - DDA3937_RS23345 0.16 -1.1
4,203,345 - DDA3937_RS23345 0.16 -0.6
4,203,356 - DDA3937_RS23345 0.20 -0.5
4,203,416 - DDA3937_RS23345 0.44 -2.1
4,203,502 + DDA3937_RS23345 0.79 -0.1
4,203,552 + +0.3
4,203,552 + -0.1
4,203,552 + -0.3
4,203,553 - +0.9
4,203,553 - -1.0
4,203,579 - +1.4
4,203,584 + +0.7
4,203,584 + -0.6
4,203,585 - +0.1
4,203,621 + -0.5
4,203,649 - +0.4
4,203,650 + -2.1
4,203,650 + +0.7
4,203,650 + -0.6
4,203,650 + -1.5
4,203,651 - +1.9
4,203,651 - -2.3
4,203,651 - -3.3
4,203,651 - +0.7
4,203,846 + DDA3937_RS18400 0.33 -2.6
4,203,846 + DDA3937_RS18400 0.33 +0.4
4,203,846 + DDA3937_RS18400 0.33 +0.7
4,203,847 - DDA3937_RS18400 0.34 -0.8
4,203,847 - DDA3937_RS18400 0.34 -1.0
4,203,911 + DDA3937_RS18400 0.42 +0.1
4,203,912 - DDA3937_RS18400 0.42 -2.7
4,203,912 - DDA3937_RS18400 0.42 -1.5
4,203,912 - DDA3937_RS18400 0.42 +1.5
4,203,927 + DDA3937_RS18400 0.44 -0.6
4,204,014 + DDA3937_RS18400 0.55 +0.8
4,204,015 - DDA3937_RS18400 0.55 -2.1
4,204,015 - DDA3937_RS18400 0.55 -0.7
4,204,015 - DDA3937_RS18400 0.55 -0.5
4,204,016 + DDA3937_RS18400 0.55 +2.3
4,204,016 + DDA3937_RS18400 0.55 -2.8
4,204,016 + DDA3937_RS18400 0.55 -1.8
4,204,016 + DDA3937_RS18400 0.55 -2.5
4,204,016 + DDA3937_RS18400 0.55 +1.2
4,204,017 - DDA3937_RS18400 0.55 +0.7
4,204,017 - DDA3937_RS18400 0.55 -1.8
4,204,017 - DDA3937_RS18400 0.55 -2.6
4,204,017 - DDA3937_RS18400 0.55 +2.0
4,204,017 - DDA3937_RS18400 0.55 +1.3
4,204,107 + DDA3937_RS18400 0.67 -0.5
4,204,107 + DDA3937_RS18400 0.67 +0.2
4,204,107 + DDA3937_RS18400 0.67 +0.8
4,204,108 - DDA3937_RS18400 0.67 -0.5
4,204,150 + DDA3937_RS18400 0.72 -1.8
4,204,151 - DDA3937_RS18400 0.73 -2.2
4,204,204 - DDA3937_RS18400 0.79 +2.2

Or see this region's nucleotide sequence