Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18095

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,128,669	+				-1.1
4,128,713	+				-0.5
4,128,722	+				-0.1
4,128,737	-				-3.0
4,128,737	-				-1.6
4,128,744	+				+1.6
4,128,744	+				+0.1
4,128,744	+				-2.1
4,128,744	+				-3.0
4,128,744	+				-0.4
4,128,745	-				-2.4
4,128,756	-				-0.1
4,128,756	-				+0.5
4,128,756	-				-0.3
4,128,774	+				-0.9
4,128,797	-				+0.6
4,128,797	-				-1.5
4,128,806	+				-0.1
4,128,807	-				-2.3
4,128,807	-				-1.6
4,128,807	-				-0.5
4,128,807	-				-2.6
4,128,829	+				+0.4
4,128,829	+				+1.4
4,128,829	+				-2.6
4,128,829	+				-3.2
4,128,830	-				-1.0
4,128,830	-				-0.5
4,128,830	-				-2.4
4,128,830	-				-0.8
4,128,830	-				-1.4
4,128,834	+				-1.7
4,128,834	+				-1.3
4,128,834	+				+1.1
4,128,834	+				-0.7
4,128,834	+				-2.4
4,128,834	+				-2.9
4,128,835	-				-1.6
4,128,835	-				-2.3
4,128,835	-				-0.8
4,128,895	+		DDA3937_RS18090	0.13	-3.1
4,128,895	+		DDA3937_RS18090	0.13	-1.3
4,128,895	+		DDA3937_RS18090	0.13	-1.2
4,128,895	+		DDA3937_RS18090	0.13	-1.5
4,128,896	-		DDA3937_RS18090	0.13	+0.4
4,128,896	-		DDA3937_RS18090	0.13	-0.8
4,129,010	-		DDA3937_RS18090	0.38	-2.3
4,129,099	+		DDA3937_RS18090	0.57	-1.8
4,129,099	+		DDA3937_RS18090	0.57	-0.6
4,129,100	-		DDA3937_RS18090	0.57	-1.1
4,129,100	-		DDA3937_RS18090	0.57	-1.3
4,129,100	-		DDA3937_RS18090	0.57	-1.6
4,129,123	+		DDA3937_RS18090	0.62	-0.1
4,129,200	+		DDA3937_RS18090	0.79	-3.4
4,129,200	+		DDA3937_RS18090	0.79	-1.8
4,129,200	+		DDA3937_RS18090	0.79	-0.1
4,129,200	+		DDA3937_RS18090	0.79	+2.3
4,129,237	+		DDA3937_RS18090	0.87	-2.6
4,129,294	+				-1.1
4,129,322	+				-2.9
4,129,322	+				+1.7
4,129,323	-				-1.8
4,129,323	-				-0.8
4,129,326	+				+3.5
4,129,338	-				+0.4
4,129,338	-				+0.5
4,129,338	-				+0.4
4,129,365	-				-0.6
4,129,365	-				+0.2
4,129,365	-				-3.6
4,129,365	-				-0.1
4,129,365	-				-1.5
4,129,368	-				-4.4
4,129,426	+				-1.5
4,129,427	-				+2.1
4,129,434	+				+2.5
4,129,434	+				-1.6
4,129,434	+				-1.4
4,129,434	+				+1.1
4,129,434	+				-1.8
4,129,434	+				-1.6
4,129,435	-				-1.2
4,129,435	-				-1.0
4,129,435	-				-0.9
4,129,438	+				-0.8
4,129,438	+				+2.6
4,129,438	+				+0.2
4,129,438	+				-1.1
4,129,439	-				+2.8
4,129,439	-				-2.1
4,129,439	-				-0.5
4,129,486	+				+0.4
4,129,497	+				+2.3
4,129,499	+				-1.8
4,129,499	+				-0.4
4,129,499	+				+0.8
4,129,500	-				-1.6
4,129,500	-				-0.3
4,129,500	-				+0.2
4,129,521	-				+0.4
4,129,533	+				+0.3
4,129,559	+				-1.4
4,129,559	+				-3.3
4,129,596	-				+1.2
4,129,612	+				+0.2
4,129,612	+				-0.7
4,129,613	-				-1.9
4,129,630	-				-2.7
4,129,696	+				+2.3
4,129,963	-				-0.5
4,129,998	+		DDA3937_RS18095	0.34	-0.4
4,129,999	-		DDA3937_RS18095	0.35	-0.5
4,130,011	-		DDA3937_RS18095	0.36	-0.5
4,130,014	+		DDA3937_RS18095	0.36	-2.2
4,130,106	+				-0.5
4,130,413	-		DDA3937_RS18095	0.76	-0.3
4,130,517	+		DDA3937_RS18095	0.86	-0.1
4,130,594	-				+1.2
4,130,602	-				-0.5
4,130,713	+				-0.0
4,130,714	-				-1.5
4,130,714	-				-4.1
4,130,724	-				+1.1
4,130,728	+				+1.8
4,130,729	-				-1.3
4,130,736	+				-1.3
4,130,769	+				-0.8
4,130,770	-				-1.5
4,130,770	-				-2.9
4,130,773	-				-1.0
4,130,776	+				-2.5
4,130,776	+				+1.5
4,130,777	-				+1.6
4,130,777	-				-4.1
4,130,777	-				-2.3
4,130,822	+				+2.0
4,130,822	+				-1.6
4,130,822	+				-1.8
4,130,822	+				-0.2
4,130,822	+				+0.1
4,130,822	+				+0.0
4,130,825	+				+2.7
4,130,825	+				-3.1
4,130,825	+				-3.3
4,130,825	+				-0.0
4,130,825	+				-2.2
4,130,826	-				+0.1
4,130,826	-				-0.5
4,130,826	-				-2.3
4,130,843	+				+1.5
4,130,844	-				+1.4
4,130,844	-				+1.4
4,130,851	+				+3.2
4,131,031	+		DDA3937_RS18100	0.27	-1.3
4,131,033	+		DDA3937_RS18100	0.27	+0.1
4,131,033	+		DDA3937_RS18100	0.27	+1.5
4,131,034	-		DDA3937_RS18100	0.27	-0.6
4,131,150	+		DDA3937_RS18100	0.51	+0.5
4,131,150	+		DDA3937_RS18100	0.51	-1.0
4,131,150	+		DDA3937_RS18100	0.51	+1.0
4,131,150	+		DDA3937_RS18100	0.51	-2.3
4,131,150	+		DDA3937_RS18100	0.51	-2.9
4,131,150	+		DDA3937_RS18100	0.51	-1.9
4,131,150	+		DDA3937_RS18100	0.51	-1.9
4,131,150	+		DDA3937_RS18100	0.51	-1.5
4,131,150	+		DDA3937_RS18100	0.51	-1.6
4,131,150	+		DDA3937_RS18100	0.51	-1.4
4,131,150	+		DDA3937_RS18100	0.51	-0.5
4,131,151	-		DDA3937_RS18100	0.51	-1.0
4,131,151	-		DDA3937_RS18100	0.51	+0.5
4,131,151	-		DDA3937_RS18100	0.51	+0.5
4,131,151	-		DDA3937_RS18100	0.51	+0.1
4,131,151	-		DDA3937_RS18100	0.51	-2.4
4,131,151	-				-0.0
4,131,151	-		DDA3937_RS18100	0.51	-2.0
4,131,151	-		DDA3937_RS18100	0.51	-1.3
4,131,151	-		DDA3937_RS18100	0.51	+1.4
4,131,151	-		DDA3937_RS18100	0.51	-1.2
4,131,151	-		DDA3937_RS18100	0.51	-2.5
4,131,151	-		DDA3937_RS18100	0.51	-0.7
4,131,197	-		DDA3937_RS18100	0.60	+0.7
4,131,197	-		DDA3937_RS18100	0.60	-0.5
4,131,197	-		DDA3937_RS18100	0.60	-3.5
4,131,382	+				-1.5
4,131,383	-				+0.5
4,131,415	+				-0.1
4,131,555	+				-2.2
4,131,564	+				-0.7
4,131,565	-				-2.3
4,131,565	-				-2.4
4,131,565	-				-1.1
4,131,580	+		DDA3937_RS18105	0.11	+1.1
4,131,582	-		DDA3937_RS18105	0.11	-2.5
4,131,582	-		DDA3937_RS18105	0.11	-1.6
4,131,582	-		DDA3937_RS18105	0.11	-2.7
4,131,623	+		DDA3937_RS18105	0.13	-2.2
4,131,623	+		DDA3937_RS18105	0.13	-1.5
4,131,623	+		DDA3937_RS18105	0.13	-0.9
4,131,623	+		DDA3937_RS18105	0.13	-1.3
4,131,623	+		DDA3937_RS18105	0.13	-2.3
4,131,624	-		DDA3937_RS18105	0.13	-1.8
4,131,624	-		DDA3937_RS18105	0.13	-0.2
4,131,624	-		DDA3937_RS18105	0.13	-0.7
4,131,624	-		DDA3937_RS18105	0.13	-2.8
4,131,647	+		DDA3937_RS18105	0.15	-0.6
4,131,647	+		DDA3937_RS18105	0.15	-1.3
4,131,647	+		DDA3937_RS18105	0.15	-0.0
4,131,648	-		DDA3937_RS18105	0.15	+0.5