Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17515

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,983,380	+		DDA3937_RS17510	0.85	-0.8
3,983,489	+				-2.5
3,983,531	+				-1.0
3,983,556	+				+2.0
3,983,556	+				+0.7
3,983,556	+				-0.5
3,983,557	-				-0.4
3,983,664	+				-0.1
3,983,665	-				+1.2
3,983,679	+				-2.5
3,983,686	+				-2.2
3,983,686	+				-0.4
3,983,686	+				-1.2
3,983,687	-				-1.2
3,983,687	-				+1.1
3,983,692	+				+1.8
3,983,692	+				-0.5
3,983,692	+				-0.5
3,983,693	-				+1.1
3,983,693	-				-0.4
3,983,693	-				-0.8
3,983,888	+		DDA3937_RS17515	0.82	-3.1
3,983,889	-		DDA3937_RS17515	0.82	-0.4
3,983,889	-		DDA3937_RS17515	0.82	-1.0
3,983,889	-		DDA3937_RS17515	0.82	-2.2
3,983,915	+				+0.5
3,983,915	+				-2.2
3,983,915	+				+1.0
3,983,916	-				-1.6
3,983,916	-				-0.4
3,983,936	+				-0.9
3,983,937	-				-1.9
3,983,937	-				-1.0
3,983,937	-				+3.1
3,983,937	-				+1.1
3,983,937	-				+1.5
3,983,937	-				+0.1
3,983,937	-				+2.1
3,983,937	-				-0.0
3,983,937	-				-0.8
3,983,970	+				+0.6
3,983,971	-				-2.3
3,983,995	+				+2.6
3,983,995	+				-3.7
3,984,026	+				+1.9
3,984,125	+				-1.9
3,984,126	-				+1.8
3,984,127	+				+2.1
3,984,127	+				+1.7
3,984,131	+				-1.8
3,984,131	+				-0.8
3,984,132	-				-2.1
3,984,132	-				-0.7
3,984,132	-				+0.8
3,984,132	-				+1.7
3,984,132	-				-1.0
3,984,134	-				-0.0
3,984,147	+				-2.0
3,984,157	+				-3.7
3,984,158	-				-0.8
3,984,259	+		DDA3937_RS17520	0.11	+0.4
3,984,259	+		DDA3937_RS17520	0.11	+0.0
3,984,259	+		DDA3937_RS17520	0.11	+1.4
3,984,259	+		DDA3937_RS17520	0.11	-3.5
3,984,260	-		DDA3937_RS17520	0.11	-0.8
3,984,260	-		DDA3937_RS17520	0.11	+2.8
3,984,260	-		DDA3937_RS17520	0.11	-0.4
3,984,260	-		DDA3937_RS17520	0.11	+2.2
3,984,260	-		DDA3937_RS17520	0.11	-0.3
3,984,260	-		DDA3937_RS17520	0.11	-2.5
3,984,260	-		DDA3937_RS17520	0.11	+0.5
3,984,260	-		DDA3937_RS17520	0.11	+0.0
3,984,275	+		DDA3937_RS17520	0.13	+0.2
3,984,275	+		DDA3937_RS17520	0.13	+2.6
3,984,276	-		DDA3937_RS17520	0.13	-0.0
3,984,276	-		DDA3937_RS17520	0.13	+1.4
3,984,293	+		DDA3937_RS17520	0.15	-2.2
3,984,293	+		DDA3937_RS17520	0.15	-1.9
3,984,293	+		DDA3937_RS17520	0.15	-0.2
3,984,294	-		DDA3937_RS17520	0.15	+0.7
3,984,294	-		DDA3937_RS17520	0.15	-0.8
3,984,294	-		DDA3937_RS17520	0.15	+3.6
3,984,294	-		DDA3937_RS17520	0.15	+1.4
3,984,294	-		DDA3937_RS17520	0.15	-2.0
3,984,294	-		DDA3937_RS17520	0.15	+0.6
3,984,294	-		DDA3937_RS17520	0.15	+2.4
3,984,295	+		DDA3937_RS17520	0.15	-0.8
3,984,295	+		DDA3937_RS17520	0.15	-1.9
3,984,295	+		DDA3937_RS17520	0.15	+0.1
3,984,295	+		DDA3937_RS17520	0.15	+1.9
3,984,295	+		DDA3937_RS17520	0.15	-0.5
3,984,295	+		DDA3937_RS17520	0.15	+0.9
3,984,295	+		DDA3937_RS17520	0.15	-0.9
3,984,296	-		DDA3937_RS17520	0.15	-2.3
3,984,296	-		DDA3937_RS17520	0.15	+3.6
3,984,296	-		DDA3937_RS17520	0.15	+3.8
3,984,296	-		DDA3937_RS17520	0.15	-1.1
3,984,296	-		DDA3937_RS17520	0.15	-1.3
3,984,296	-		DDA3937_RS17520	0.15	-2.6
3,984,296	-		DDA3937_RS17520	0.15	-0.2
3,984,296	-		DDA3937_RS17520	0.15	-2.3
3,984,296	-		DDA3937_RS17520	0.15	-3.5
3,984,311	-		DDA3937_RS17520	0.17	-1.2
3,984,352	+		DDA3937_RS17520	0.23	-2.0
3,984,556	+		DDA3937_RS17520	0.49	-1.0
3,984,557	-		DDA3937_RS17520	0.49	+2.1
3,984,557	-		DDA3937_RS17520	0.49	+1.2
3,984,557	-		DDA3937_RS17520	0.49	-3.2
3,984,557	-		DDA3937_RS17520	0.49	-2.3
3,984,560	+		DDA3937_RS17520	0.50	+1.4
3,984,560	+		DDA3937_RS17520	0.50	+1.3
3,984,560	+		DDA3937_RS17520	0.50	-1.2
3,984,560	+		DDA3937_RS17520	0.50	-1.4
3,984,560	+		DDA3937_RS17520	0.50	+2.2
3,984,560	+		DDA3937_RS17520	0.50	-0.7
3,984,560	+		DDA3937_RS17520	0.50	-3.4
3,984,560	+		DDA3937_RS17520	0.50	-0.1
3,984,560	+		DDA3937_RS17520	0.50	+0.6
3,984,560	+		DDA3937_RS17520	0.50	-1.0
3,984,560	+		DDA3937_RS17520	0.50	+0.3
3,984,561	-		DDA3937_RS17520	0.50	+1.0
3,984,561	-		DDA3937_RS17520	0.50	+0.4
3,984,561	-		DDA3937_RS17520	0.50	-0.4
3,984,561	-		DDA3937_RS17520	0.50	+0.2
3,984,561	-		DDA3937_RS17520	0.50	-1.4
3,984,561	-		DDA3937_RS17520	0.50	-3.9
3,984,561	-		DDA3937_RS17520	0.50	-1.1
3,984,724	-		DDA3937_RS17520	0.71	-2.1
3,984,752	+		DDA3937_RS17520	0.75	-1.2
3,984,753	-		DDA3937_RS17520	0.75	+0.5
3,984,775	-		DDA3937_RS17520	0.78	+2.9
3,984,791	-		DDA3937_RS17520	0.80	+2.6
3,984,817	+		DDA3937_RS17520	0.83	+1.1
3,984,818	-		DDA3937_RS17520	0.83	-2.3
3,984,824	+		DDA3937_RS17520	0.84	-2.9
3,984,824	+		DDA3937_RS17520	0.84	+0.9
3,984,824	+		DDA3937_RS17520	0.84	+0.7
3,984,824	+		DDA3937_RS17520	0.84	-2.1
3,984,824	+		DDA3937_RS17520	0.84	+0.6
3,984,825	-		DDA3937_RS17520	0.84	-2.2
3,984,825	-		DDA3937_RS17520	0.84	-0.7
3,984,825	-		DDA3937_RS17520	0.84	+0.9
3,984,825	-		DDA3937_RS17520	0.84	-2.2
3,984,825	-		DDA3937_RS17520	0.84	+0.5
3,984,825	-		DDA3937_RS17520	0.84	-0.2
3,984,826	+		DDA3937_RS17520	0.85	-1.4
3,984,826	+		DDA3937_RS17520	0.85	-4.4
3,984,826	+		DDA3937_RS17520	0.85	-1.4
3,984,826	+		DDA3937_RS17520	0.85	-2.0
3,984,827	-		DDA3937_RS17520	0.85	-1.6
3,984,827	-		DDA3937_RS17520	0.85	+2.0