Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17350

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,946,399	-		DDA3937_RS17345	0.72	-0.6
3,946,399	-		DDA3937_RS17345	0.72	-3.3
3,946,399	-		DDA3937_RS17345	0.72	+2.1
3,946,696	+		DDA3937_RS17345	0.85	+1.4
3,946,696	+		DDA3937_RS17345	0.85	-4.8
3,946,697	-		DDA3937_RS17345	0.85	-2.7
3,946,697	-		DDA3937_RS17345	0.85	-1.4
3,946,697	-		DDA3937_RS17345	0.85	-0.6
3,946,736	+		DDA3937_RS17345	0.87	+1.1
3,946,737	-				+1.6
3,946,800	+		DDA3937_RS17345	0.90	+0.4
3,946,800	+		DDA3937_RS17345	0.90	-0.1
3,946,801	-		DDA3937_RS17345	0.90	-2.0
3,946,801	-		DDA3937_RS17345	0.90	+1.0
3,946,846	-				-2.6
3,946,935	-				+0.8
3,946,935	-				+0.8
3,946,978	+				-0.0
3,946,978	+				-0.8
3,946,979	-				-2.5
3,946,979	-				-0.4
3,947,007	-				+0.5
3,947,007	-				-1.8
3,947,014	+				-3.0
3,947,015	-				+0.4
3,947,016	+				-0.7
3,947,016	+				-1.1
3,947,016	+				-0.9
3,947,017	-				-3.2
3,947,017	-				-0.5
3,947,034	+				+1.6
3,947,034	+				-0.1
3,947,034	+				+0.6
3,947,034	+				-2.1
3,947,035	-				-2.7
3,947,035	-				-2.3
3,947,035	-				+1.2
3,947,035	-				+0.5
3,947,040	+				-0.4
3,947,040	+				-2.0
3,947,040	+				-0.5
3,947,041	-				-1.8
3,947,041	-				+1.1
3,947,041	-				-1.6
3,947,041	-				-1.4
3,947,041	-				+1.7
3,947,146	+				-2.5
3,947,191	-				-2.1
3,947,195	+				-2.4
3,947,195	+				-0.3
3,947,195	+				-0.2
3,947,195	+				+0.4
3,947,251	+				-3.1
3,947,328	-				-1.2
3,947,429	+				+1.5
3,947,429	+				-0.6
3,947,430	-				+0.6
3,947,430	-				-1.3
3,947,433	+				-1.2
3,947,434	-				+1.1
3,947,434	-				+0.0
3,947,434	-				-0.2
3,947,434	-				-1.0
3,947,501	+		DDA3937_RS17350	0.13	+0.8
3,947,640	+		DDA3937_RS17350	0.22	+1.6
3,947,641	-		DDA3937_RS17350	0.23	+1.4
3,947,641	-		DDA3937_RS17350	0.23	+1.6
3,947,657	+		DDA3937_RS17350	0.24	-1.2
3,947,795	+		DDA3937_RS17350	0.34	-0.0
3,947,796	-		DDA3937_RS17350	0.34	-2.5
3,947,796	-		DDA3937_RS17350	0.34	-0.0
3,947,796	-		DDA3937_RS17350	0.34	-1.7
3,947,813	+		DDA3937_RS17350	0.35	-0.5
3,947,813	+		DDA3937_RS17350	0.35	+1.0
3,947,814	-		DDA3937_RS17350	0.35	+0.3
3,947,814	-		DDA3937_RS17350	0.35	+2.3
3,947,814	-		DDA3937_RS17350	0.35	+0.2
3,947,828	+		DDA3937_RS17350	0.36	+1.3
3,947,829	-		DDA3937_RS17350	0.36	+0.8
3,947,915	+		DDA3937_RS17350	0.42	-0.6
3,947,915	+		DDA3937_RS17350	0.42	-0.2
3,947,915	+		DDA3937_RS17350	0.42	+2.4
3,947,916	-		DDA3937_RS17350	0.42	+1.6
3,947,916	-		DDA3937_RS17350	0.42	+2.7
3,947,916	-		DDA3937_RS17350	0.42	-0.0
3,947,952	-		DDA3937_RS17350	0.45	+0.6
3,948,264	-		DDA3937_RS17350	0.67	+0.3
3,948,275	+		DDA3937_RS17350	0.68	+0.1
3,948,275	+		DDA3937_RS17350	0.68	-3.5
3,948,276	-		DDA3937_RS17350	0.68	-1.4
3,948,276	-		DDA3937_RS17350	0.68	+2.6
3,948,288	+		DDA3937_RS17350	0.69	-0.7
3,948,289	-		DDA3937_RS17350	0.69	+1.2
3,948,289	-		DDA3937_RS17350	0.69	-2.4
3,948,309	-		DDA3937_RS17350	0.70	-0.5
3,948,317	+		DDA3937_RS17350	0.71	-2.8
3,948,317	+		DDA3937_RS17350	0.71	-0.8
3,948,318	-		DDA3937_RS17350	0.71	+0.3
3,948,338	+		DDA3937_RS17350	0.72	-0.2
3,948,372	-		DDA3937_RS17350	0.75	-3.1
3,948,533	+		DDA3937_RS17350	0.86	-1.4
3,948,534	-		DDA3937_RS17350	0.86	-2.5
3,948,534	-		DDA3937_RS17350	0.86	-0.4
3,948,555	+		DDA3937_RS17350	0.88	-0.1
3,948,560	+		DDA3937_RS17350	0.88	-0.3
3,948,561	-		DDA3937_RS17350	0.88	-1.2
3,948,564	-		DDA3937_RS17350	0.89	-2.8
3,948,564	-		DDA3937_RS17350	0.89	-1.3
3,948,564	-		DDA3937_RS17350	0.89	-3.2
3,948,564	-		DDA3937_RS17350	0.89	-0.7
3,948,734	+				+2.1
3,948,734	+				-1.0
3,948,734	+				+1.7
3,948,734	+				+2.3
3,948,734	+				-2.1
3,948,734	+				-0.7
3,948,735	-				+1.3
3,948,735	-				+0.3
3,948,739	-				-0.3
3,948,826	+				-0.2
3,948,826	+				-2.2
3,948,826	+				+0.8
3,948,826	+				-0.4
3,948,826	+				-3.4
3,948,827	-				+0.9
3,948,887	-				-0.4
3,948,887	-				-1.0
3,948,890	+				+0.4
3,948,890	+				+2.0
3,948,891	-				+0.2
3,948,958	+		DDA3937_RS17355	0.12	-1.4
3,949,021	+		DDA3937_RS17355	0.16	-0.2
3,949,123	+		DDA3937_RS17355	0.23	-2.0
3,949,123	+		DDA3937_RS17355	0.23	-2.2
3,949,123	+		DDA3937_RS17355	0.23	+0.5
3,949,124	-		DDA3937_RS17355	0.23	-0.3
3,949,276	+		DDA3937_RS17355	0.33	+1.6
3,949,276	+		DDA3937_RS17355	0.33	-2.4
3,949,276	+		DDA3937_RS17355	0.33	-1.2
3,949,276	+		DDA3937_RS17355	0.33	+1.2
3,949,276	+		DDA3937_RS17355	0.33	-3.2
3,949,276	+		DDA3937_RS17355	0.33	+3.9
3,949,276	+		DDA3937_RS17355	0.33	-2.4
3,949,276	+		DDA3937_RS17355	0.33	-1.6
3,949,276	+		DDA3937_RS17355	0.33	-0.7
3,949,276	+		DDA3937_RS17355	0.33	-2.8
3,949,276	+		DDA3937_RS17355	0.33	-0.4
3,949,276	+		DDA3937_RS17355	0.33	+2.1
3,949,276	+				-0.4
3,949,276	+		DDA3937_RS17355	0.33	-0.2
3,949,277	-		DDA3937_RS17355	0.33	-0.5
3,949,277	-		DDA3937_RS17355	0.33	-3.2
3,949,277	-		DDA3937_RS17355	0.33	-0.3
3,949,277	-		DDA3937_RS17355	0.33	-0.4
3,949,277	-		DDA3937_RS17355	0.33	-0.6
3,949,277	-		DDA3937_RS17355	0.33	-2.0
3,949,277	-		DDA3937_RS17355	0.33	-2.4
3,949,277	-		DDA3937_RS17355	0.33	-1.0
3,949,277	-		DDA3937_RS17355	0.33	+0.5
3,949,277	-		DDA3937_RS17355	0.33	-0.8
3,949,277	-		DDA3937_RS17355	0.33	-0.8
3,949,279	+		DDA3937_RS17355	0.33	-0.5
3,949,279	+		DDA3937_RS17355	0.33	+0.2
3,949,279	+		DDA3937_RS17355	0.33	+0.4
3,949,279	+		DDA3937_RS17355	0.33	-2.0
3,949,280	-		DDA3937_RS17355	0.34	-1.4
3,949,280	-		DDA3937_RS17355	0.34	-2.1
3,949,295	-		DDA3937_RS17355	0.35	+0.8
3,949,370	+		DDA3937_RS17355	0.40	-1.6
3,949,370	+		DDA3937_RS17355	0.40	-1.0
3,949,371	-		DDA3937_RS17355	0.40	+0.5
3,949,379	+		DDA3937_RS17355	0.40	-0.6
3,949,380	-				-0.0
3,949,382	-		DDA3937_RS17355	0.40	+1.0
3,949,484	-		DDA3937_RS17355	0.47	+1.3
3,949,495	+		DDA3937_RS17355	0.48	+2.9
3,949,496	-		DDA3937_RS17355	0.48	-2.7
3,949,505	+		DDA3937_RS17355	0.49	-2.6
3,949,505	+		DDA3937_RS17355	0.49	-1.2
3,949,505	+		DDA3937_RS17355	0.49	-2.3
3,949,505	+		DDA3937_RS17355	0.49	+0.8
3,949,505	+		DDA3937_RS17355	0.49	-0.7
3,949,505	+		DDA3937_RS17355	0.49	-2.0
3,949,506	-		DDA3937_RS17355	0.49	+0.7
3,949,506	-		DDA3937_RS17355	0.49	-0.1
3,949,506	-		DDA3937_RS17355	0.49	-3.2
3,949,506	-		DDA3937_RS17355	0.49	+0.5
3,949,506	-		DDA3937_RS17355	0.49	+1.3
3,949,591	+		DDA3937_RS17355	0.54	-0.3
3,949,591	+		DDA3937_RS17355	0.54	-1.7
3,949,592	-		DDA3937_RS17355	0.54	-1.3
3,949,592	-		DDA3937_RS17355	0.54	-1.4
3,949,592	-		DDA3937_RS17355	0.54	+0.4
3,949,595	+		DDA3937_RS17355	0.55	-0.0
3,949,595	+		DDA3937_RS17355	0.55	-2.1
3,949,596	-		DDA3937_RS17355	0.55	-0.8
3,949,596	-		DDA3937_RS17355	0.55	-2.1
3,949,596	-		DDA3937_RS17355	0.55	+0.5
3,949,645	+		DDA3937_RS17355	0.58	-0.8
3,949,645	+		DDA3937_RS17355	0.58	-2.3
3,949,646	-		DDA3937_RS17355	0.58	+2.1
3,949,691	-		DDA3937_RS17355	0.61	+2.3
3,949,700	+		DDA3937_RS17355	0.62	-3.2
3,949,701	-		DDA3937_RS17355	0.62	-0.2
3,949,701	-		DDA3937_RS17355	0.62	-0.4
3,949,701	-		DDA3937_RS17355	0.62	-1.9