Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17240

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,924,248	+				-4.2
3,924,249	-				+1.3
3,924,299	-				-1.8
3,924,344	+		DDA3937_RS17235	0.11	-2.0
3,924,344	+		DDA3937_RS17235	0.11	-3.2
3,924,345	-		DDA3937_RS17235	0.11	+1.3
3,924,376	+		DDA3937_RS17235	0.15	+0.3
3,924,377	-		DDA3937_RS17235	0.15	-0.5
3,924,387	-		DDA3937_RS17235	0.17	-1.0
3,924,517	+		DDA3937_RS17235	0.34	+0.0
3,924,629	+		DDA3937_RS17235	0.49	-2.7
3,924,630	-		DDA3937_RS17235	0.49	-3.8
3,924,690	+		DDA3937_RS17235	0.57	-1.0
3,924,691	-				+1.5
3,924,691	-		DDA3937_RS17235	0.57	+0.8
3,924,691	-		DDA3937_RS17235	0.57	-0.3
3,924,691	-		DDA3937_RS17235	0.57	-0.9
3,924,731	+		DDA3937_RS17235	0.63	-2.5
3,924,753	+				-0.8
3,924,753	+		DDA3937_RS17235	0.65	-3.3
3,924,753	+		DDA3937_RS17235	0.65	+1.5
3,924,753	+		DDA3937_RS17235	0.65	-2.0
3,924,753	+		DDA3937_RS17235	0.65	-0.0
3,924,753	+		DDA3937_RS17235	0.65	-0.5
3,924,753	+		DDA3937_RS17235	0.65	-1.3
3,924,753	+		DDA3937_RS17235	0.65	-1.6
3,924,754	-		DDA3937_RS17235	0.66	-0.5
3,924,754	-		DDA3937_RS17235	0.66	+0.7
3,924,754	-		DDA3937_RS17235	0.66	-0.7
3,924,754	-		DDA3937_RS17235	0.66	-0.8
3,924,754	-		DDA3937_RS17235	0.66	-0.5
3,924,870	-		DDA3937_RS17235	0.81	+2.5
3,924,870	-		DDA3937_RS17235	0.81	-0.6
3,924,879	-		DDA3937_RS17235	0.82	+1.6
3,924,879	-		DDA3937_RS17235	0.82	-1.3
3,924,879	-		DDA3937_RS17235	0.82	-1.9
3,924,884	+		DDA3937_RS17235	0.83	-3.0
3,924,885	-		DDA3937_RS17235	0.83	-1.0
3,924,903	+		DDA3937_RS17235	0.85	-1.0
3,924,903	+		DDA3937_RS17235	0.85	+1.7
3,924,903	+		DDA3937_RS17235	0.85	-1.3
3,924,903	+		DDA3937_RS17235	0.85	-0.0
3,924,903	+		DDA3937_RS17235	0.85	-2.3
3,924,903	+		DDA3937_RS17235	0.85	-1.3
3,924,903	+		DDA3937_RS17235	0.85	-2.8
3,924,903	+		DDA3937_RS17235	0.85	-0.1
3,924,904	-		DDA3937_RS17235	0.86	+0.2
3,924,904	-		DDA3937_RS17235	0.86	-1.9
3,924,905	+		DDA3937_RS17235	0.86	+0.0
3,924,905	+		DDA3937_RS17235	0.86	-0.0
3,924,905	+		DDA3937_RS17235	0.86	-2.0
3,924,906	-		DDA3937_RS17235	0.86	-1.3
3,924,906	-		DDA3937_RS17235	0.86	+1.0
3,924,976	+				-1.9
3,925,007	-				-0.8
3,925,043	+				-2.0
3,925,043	+				-2.5
3,925,043	+				-1.0
3,925,043	+				+1.7
3,925,044	-				-1.0
3,925,044	-				+0.9
3,925,069	-				-1.1
3,925,075	+				+2.4
3,925,076	-				+1.5
3,925,076	-				+2.1
3,925,076	-				+0.4
3,925,078	-				-2.9
3,925,078	-				-2.8
3,925,116	+				+2.5
3,925,117	-				-0.4
3,925,198	+				-2.0
3,925,199	-				-4.0
3,925,212	+				+0.7
3,925,212	+				-0.7
3,925,212	+				-3.0
3,925,212	+				+0.2
3,925,212	+				+0.3
3,925,213	-				-2.3
3,925,213	-				-0.2
3,925,213	-				-1.3
3,925,213	-				-2.0
3,925,213	-				+0.2
3,925,213	-				-1.9
3,925,235	+				-1.6
3,925,235	+				-2.5
3,925,235	+				+1.4
3,925,236	-				-1.8
3,925,236	-				-0.8
3,925,236	-				-2.3
3,925,253	+				+0.7
3,925,406	+				-0.5
3,925,406	+				+1.1
3,925,406	+				-3.9
3,925,407	-				-1.3
3,925,407	-				-1.0
3,925,407	-				+1.0
3,925,412	+				-2.0
3,925,412	+				-0.0
3,925,412	+				-1.5
3,925,413	-				-1.0
3,925,413	-				-0.6
3,925,413	-				+1.5
3,925,413	-				-0.7
3,925,425	+				+0.5
3,925,425	+				-1.3
3,925,425	+				-2.7
3,925,425	+				-2.6
3,925,426	-				-0.1
3,925,426	-				-0.0
3,925,426	-				-0.5
3,925,426	-				+1.3
3,925,426	-				-2.0
3,925,426	-				-1.6
3,925,426	-				-2.7
3,925,458	+		DDA3937_RS17240	0.11	-0.7
3,925,458	+		DDA3937_RS17240	0.11	+2.8
3,925,458	+		DDA3937_RS17240	0.11	+1.7
3,925,458	+		DDA3937_RS17240	0.11	-0.8
3,925,458	+		DDA3937_RS17240	0.11	-0.0
3,925,458	+		DDA3937_RS17240	0.11	-1.5
3,925,459	-		DDA3937_RS17240	0.11	-0.8
3,925,459	-		DDA3937_RS17240	0.11	+1.4
3,925,459	-		DDA3937_RS17240	0.11	-2.4
3,925,459	-		DDA3937_RS17240	0.11	+0.1
3,925,459	-		DDA3937_RS17240	0.11	+0.0
3,925,459	-		DDA3937_RS17240	0.11	-2.8
3,925,459	-		DDA3937_RS17240	0.11	+0.7
3,925,459	-		DDA3937_RS17240	0.11	-2.3
3,925,459	-		DDA3937_RS17240	0.11	-1.8
3,925,459	-		DDA3937_RS17240	0.11	-2.0
3,925,460	+		DDA3937_RS17240	0.11	-1.6
3,925,460	+		DDA3937_RS17240	0.11	-1.2
3,925,461	-		DDA3937_RS17240	0.11	-0.8
3,925,620	-		DDA3937_RS17240	0.20	+0.0
3,925,626	-		DDA3937_RS17240	0.20	+0.4
3,925,662	-		DDA3937_RS17240	0.22	-1.9
3,925,794	+		DDA3937_RS17240	0.29	-1.9
3,925,794	+		DDA3937_RS17240	0.29	+0.2
3,925,794	+		DDA3937_RS17240	0.29	-0.8
3,925,794	+		DDA3937_RS17240	0.29	+1.0
3,925,794	+		DDA3937_RS17240	0.29	+0.8
3,925,794	+		DDA3937_RS17240	0.29	-0.1
3,925,794	+		DDA3937_RS17240	0.29	-1.0
3,925,795	-		DDA3937_RS17240	0.29	-0.2
3,925,795	-		DDA3937_RS17240	0.29	-2.8
3,925,795	-		DDA3937_RS17240	0.29	-1.5
3,925,795	-		DDA3937_RS17240	0.29	-1.5
3,925,795	-		DDA3937_RS17240	0.29	-3.2
3,925,795	-		DDA3937_RS17240	0.29	-0.1
3,925,795	-		DDA3937_RS17240	0.29	-0.8
3,925,795	-		DDA3937_RS17240	0.29	+0.2
3,925,795	-		DDA3937_RS17240	0.29	-1.1
3,925,795	-		DDA3937_RS17240	0.29	-0.3
3,925,795	-		DDA3937_RS17240	0.29	+0.4
3,925,795	-		DDA3937_RS17240	0.29	-1.5
3,925,795	-		DDA3937_RS17240	0.29	+0.1
3,925,806	+		DDA3937_RS17240	0.29	+0.2
3,925,865	+		DDA3937_RS17240	0.32	-2.4
3,925,865	+		DDA3937_RS17240	0.32	-1.3
3,925,971	+		DDA3937_RS17240	0.38	-2.5
3,925,971	+		DDA3937_RS17240	0.38	-1.0
3,925,972	-		DDA3937_RS17240	0.38	-0.8
3,926,064	+		DDA3937_RS17240	0.43	+0.5
3,926,065	-		DDA3937_RS17240	0.43	+2.1
3,926,065	-		DDA3937_RS17240	0.43	-1.4
3,926,072	+		DDA3937_RS17240	0.43	-1.7
3,926,112	+		DDA3937_RS17240	0.45	-2.6
3,926,113	-		DDA3937_RS17240	0.45	-2.3
3,926,113	-		DDA3937_RS17240	0.45	-2.6
3,926,113	-		DDA3937_RS17240	0.45	-2.5
3,926,122	+		DDA3937_RS17240	0.45	-2.5
3,926,123	-		DDA3937_RS17240	0.46	+1.1
3,926,153	+		DDA3937_RS17240	0.47	+0.1
3,926,154	-		DDA3937_RS17240	0.47	-0.2
3,926,393	+		DDA3937_RS17240	0.59	-1.5
3,926,709	-		DDA3937_RS17240	0.76	+2.2
3,926,729	+		DDA3937_RS17240	0.77	+2.1
3,926,771	-		DDA3937_RS17240	0.79	-1.8
3,926,771	-		DDA3937_RS17240	0.79	+0.5
3,926,771	-		DDA3937_RS17240	0.79	-0.8
3,926,953	+		DDA3937_RS17240	0.88	-3.2
3,926,953	+		DDA3937_RS17240	0.88	-1.5
3,926,954	-		DDA3937_RS17240	0.88	-2.0
3,926,954	-		DDA3937_RS17240	0.88	-1.9
3,926,954	-		DDA3937_RS17240	0.88	-1.5
3,926,954	-		DDA3937_RS17240	0.88	-1.5
3,927,240	-				+2.3
3,927,240	-				-2.6
3,927,252	+				-3.6
3,927,275	+				-2.5
3,927,281	-				+0.3
3,927,281	-				-1.0
3,927,281	-				+2.5
3,927,286	+				-3.8
3,927,293	+				+1.5
3,927,317	+				-0.8
3,927,317	+				-1.3
3,927,317	+				+0.5
3,927,317	+				-1.4
3,927,318	-				-1.8
3,927,318	-				+1.9
3,927,318	-				-0.5
3,927,318	-				+1.8
3,927,318	-				-0.8
3,927,318	-				-2.7
3,927,338	-				-2.4
3,927,340	+				+0.0
3,927,340	+				-3.0
3,927,340	+				+2.9
3,927,341	-				-1.8
3,927,380	-		DDA3937_RS17245	0.15	+0.6
3,927,380	-		DDA3937_RS17245	0.15	-0.4
3,927,380	-		DDA3937_RS17245	0.15	-2.6
3,927,404	+		DDA3937_RS17245	0.21	+1.5
3,927,404	+		DDA3937_RS17245	0.21	+1.0
3,927,404	+		DDA3937_RS17245	0.21	+3.5
3,927,404	+		DDA3937_RS17245	0.21	+0.5
3,927,404	+		DDA3937_RS17245	0.21	+0.5
3,927,405	-		DDA3937_RS17245	0.21	-1.0
3,927,405	-		DDA3937_RS17245	0.21	-1.5
3,927,405	-		DDA3937_RS17245	0.21	-2.8
3,927,480	+		DDA3937_RS17245	0.40	+2.2
3,927,480	+		DDA3937_RS17245	0.40	-0.5
3,927,480	+		DDA3937_RS17245	0.40	+0.6
3,927,480	+		DDA3937_RS17245	0.40	-2.1
3,927,481	-		DDA3937_RS17245	0.40	-0.0
3,927,481	-		DDA3937_RS17245	0.40	-1.8
3,927,481	-		DDA3937_RS17245	0.40	-1.6
3,927,481	-		DDA3937_RS17245	0.40	-2.5
3,927,517	+		DDA3937_RS17245	0.49	-2.0
3,927,517	+		DDA3937_RS17245	0.49	+2.5
3,927,518	-		DDA3937_RS17245	0.49	+2.3
3,927,518	-		DDA3937_RS17245	0.49	-2.0
3,927,518	-		DDA3937_RS17245	0.49	-2.8
3,927,518	-		DDA3937_RS17245	0.49	+0.7
3,927,518	-		DDA3937_RS17245	0.49	-1.8
3,927,550	+		DDA3937_RS17245	0.57	-0.6
3,927,550	+		DDA3937_RS17245	0.57	-1.3
3,927,550	+		DDA3937_RS17245	0.57	-0.7
3,927,550	+		DDA3937_RS17245	0.57	+1.5
3,927,551	-		DDA3937_RS17245	0.58	-2.8
3,927,551	-		DDA3937_RS17245	0.58	-3.0
3,927,551	-		DDA3937_RS17245	0.58	-2.0
3,927,582	+		DDA3937_RS17245	0.65	+2.9
3,927,583	-		DDA3937_RS17245	0.65	-0.6
3,927,583	-		DDA3937_RS17245	0.65	-1.9
3,927,583	-		DDA3937_RS17245	0.65	+0.6
3,927,583	-		DDA3937_RS17245	0.65	-2.0
3,927,630	-		DDA3937_RS17245	0.77	-0.4
3,927,630	-		DDA3937_RS17245	0.77	-0.6
3,927,630	-		DDA3937_RS17245	0.77	-0.9
3,927,728	+				-1.4
3,927,764	+		DDA3937_RS17250	0.11	-3.0
3,927,858	+		DDA3937_RS17250	0.45	+1.2
3,927,952	-		DDA3937_RS17250	0.79	-0.5
3,927,952	-		DDA3937_RS17250	0.79	-1.9
3,928,073	+				-1.5
3,928,073	+				-2.0
3,928,073	+				-1.9
3,928,073	+				+0.5
3,928,073	+				+0.8
3,928,074	-				-0.5
3,928,074	-				-1.5
3,928,093	+				-0.6
3,928,113	+				-1.8