Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16685

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,796,305	+		DDA3937_RS16680	0.48	-0.7
3,796,305	+		DDA3937_RS16680	0.48	+0.9
3,796,305	+		DDA3937_RS16680	0.48	-1.0
3,796,305	+		DDA3937_RS16680	0.48	+0.8
3,796,305	+		DDA3937_RS16680	0.48	-2.5
3,796,305	+		DDA3937_RS16680	0.48	-1.6
3,796,305	+		DDA3937_RS16680	0.48	+0.5
3,796,305	+		DDA3937_RS16680	0.48	+0.3
3,796,305	+		DDA3937_RS16680	0.48	-2.7
3,796,306	-		DDA3937_RS16680	0.48	-1.9
3,796,306	-		DDA3937_RS16680	0.48	-0.2
3,796,306	-		DDA3937_RS16680	0.48	-2.1
3,796,306	-		DDA3937_RS16680	0.48	-0.7
3,796,306	-		DDA3937_RS16680	0.48	+0.6
3,796,306	-		DDA3937_RS16680	0.48	-1.9
3,796,306	-		DDA3937_RS16680	0.48	+1.1
3,796,306	-		DDA3937_RS16680	0.48	+0.4
3,796,306	-		DDA3937_RS16680	0.48	-0.3
3,796,306	-		DDA3937_RS16680	0.48	-1.4
3,796,306	-		DDA3937_RS16680	0.48	-1.2
3,796,306	-		DDA3937_RS16680	0.48	+0.6
3,796,306	-		DDA3937_RS16680	0.48	-0.0
3,796,306	-				-0.7
3,796,306	-		DDA3937_RS16680	0.48	-2.2
3,796,306	-		DDA3937_RS16680	0.48	-1.5
3,796,541	+		DDA3937_RS16680	0.65	+1.0
3,796,541	+		DDA3937_RS16680	0.65	+2.5
3,796,572	+		DDA3937_RS16680	0.67	-1.7
3,796,572	+		DDA3937_RS16680	0.67	-3.0
3,796,572	+		DDA3937_RS16680	0.67	+0.6
3,796,572	+		DDA3937_RS16680	0.67	+1.0
3,796,790	+		DDA3937_RS16680	0.83	-0.5
3,796,829	+		DDA3937_RS16680	0.85	+2.3
3,796,830	-		DDA3937_RS16680	0.85	-1.9
3,797,012	+				+1.1
3,797,013	-				-2.8
3,797,013	-				-1.5
3,797,032	+				+0.5
3,797,032	+				-0.9
3,797,127	+		DDA3937_RS16685	0.25	-1.9
3,797,128	-		DDA3937_RS16685	0.25	-1.1
3,797,277	-		DDA3937_RS16685	0.64	-3.1
3,797,277	-		DDA3937_RS16685	0.64	-2.5
3,797,288	-		DDA3937_RS16685	0.67	-1.2
3,797,411	+				-2.1
3,797,411	+				-0.1
3,797,437	+				-0.6
3,797,437	+				+1.1
3,797,437	+				+1.9
3,797,438	-				-2.7
3,797,438	-				-0.8
3,797,447	-				-0.7
3,797,447	-				-2.2
3,797,504	+				+3.9
3,797,504	+				-1.7
3,797,505	-				-2.5
3,797,505	-				+2.4
3,797,505	-				+1.2
3,797,505	-				-0.7
3,797,505	-				+1.9
3,797,505	-				-2.1
3,797,505	-				-0.3
3,797,507	+				+1.7
3,797,507	+				-1.0
3,797,520	+				-0.1
3,797,521	-				+1.2
3,797,521	-				-0.4
3,797,521	-				-0.7
3,797,556	-				+1.5
3,797,556	-				-2.3
3,797,603	+				-1.0
3,797,603	+				-1.4
3,797,603	+				-0.2
3,797,604	-				-1.2
3,797,604	-				-2.7
3,797,604	-				-1.4
3,797,607	+				-3.9
3,797,608	-				+1.9
3,797,608	-				-1.6
3,797,608	-				+2.7
3,797,608	-				-0.3
3,797,616	-				+0.6
3,797,646	+				-0.2
3,797,646	+				-0.4
3,797,647	-				+0.7
3,797,649	+				-3.3
3,797,649	+				-0.4
3,797,649	+				+1.1
3,797,649	+				-0.7
3,797,649	+				-0.5
3,797,649	+				-1.2
3,797,649	+				-0.2
3,797,650	-				+1.9
3,797,650	-				-2.8
3,797,650	-				-1.4
3,797,650	-				-1.3
3,797,650	-				-0.8
3,797,650	-				+0.2
3,797,650	-				-2.5
3,797,650	-				+0.0
3,797,650	-				+0.9
3,797,650	-				+1.4
3,797,653	+				-0.2
3,797,653	+				-1.4
3,797,653	+				-1.0
3,797,653	+				+0.2
3,797,654	-				-2.6
3,797,654	-				+2.3
3,797,654	-				-1.0
3,797,654	-				-1.1
3,797,654	-				+1.0
3,797,656	+				-0.6
3,797,656	+				-2.2
3,797,657	-				-0.7
3,797,657	-				+0.0
3,797,657	-				+0.4
3,797,657	-				+3.6
3,797,659	+				-3.0
3,797,659	+				-2.1
3,797,659	+				+2.8
3,797,660	-				+0.4
3,797,660	-				-0.7
3,797,680	+				+1.2
3,797,680	+				+0.3
3,797,681	-				+0.0
3,797,682	+				-1.7
3,797,682	+				-0.9
3,797,682	+				-1.6
3,797,682	+				-2.0
3,797,682	+				-0.7
3,797,682	+				-2.0
3,797,682	+				+0.1
3,797,682	+				-1.2
3,797,682	+				-1.2
3,797,682	+				-0.3
3,797,682	+				-2.6
3,797,682	+				-1.6
3,797,682	+				+0.8
3,797,682	+				+1.0
3,797,683	-				-1.1
3,797,683	-				+1.1
3,797,683	-				+0.7
3,797,683	-				+0.0
3,797,683	-				-0.4
3,797,683	-				-3.1
3,797,683	-				-0.2
3,797,683	-				+0.2
3,797,686	+				-2.1
3,797,686	+				-1.4
3,797,686	+				-2.3
3,797,686	+				-0.4
3,797,686	+				-1.1
3,797,686	+				-1.0
3,797,686	+				-0.7
3,797,686	+				+0.7
3,797,686	+				-0.2
3,797,686	+				-2.8
3,797,686	+				-3.4
3,797,687	-				+0.3
3,797,687	-				+1.2
3,797,687	-				-1.2
3,797,687	-				-2.3
3,797,687	-				-1.6
3,797,687	-				-3.1
3,797,687	-				+0.3
3,797,687	-				-0.9
3,797,687	-				-1.4
3,797,687	-				+0.8
3,797,687	-				+0.1
3,797,687	-				-2.5
3,797,690	+				-0.4
3,797,691	-				-0.3
3,797,782	+				-2.8
3,797,782	+				-2.1
3,797,782	+				-0.3
3,797,782	+				-3.2
3,797,783	-				+0.4
3,797,783	-				+1.3
3,797,783	-				+0.3
3,797,783	-				+0.9
3,797,783	-				-2.0
3,797,783	-				+1.1
3,797,783	-				-2.4
3,797,783	-				+0.9
3,797,783	-				-1.0
3,797,884	+		DDA3937_RS16690	0.20	+1.4
3,797,884	+		DDA3937_RS16690	0.20	+2.3
3,797,911	+		DDA3937_RS16690	0.23	+0.5
3,797,912	-		DDA3937_RS16690	0.23	-1.0
3,797,912	-		DDA3937_RS16690	0.23	-2.9
3,797,912	-		DDA3937_RS16690	0.23	-1.2
3,797,981	+		DDA3937_RS16690	0.30	+0.4
3,797,981	+		DDA3937_RS16690	0.30	+0.7
3,797,982	-		DDA3937_RS16690	0.30	+2.4
3,797,983	+		DDA3937_RS16690	0.30	+1.3
3,797,983	+		DDA3937_RS16690	0.30	+1.3
3,798,058	+		DDA3937_RS16690	0.38	+0.0
3,798,062	-		DDA3937_RS16690	0.39	+0.1
3,798,133	+		DDA3937_RS16690	0.46	-2.5
3,798,133	+		DDA3937_RS16690	0.46	+1.2
3,798,133	+		DDA3937_RS16690	0.46	-0.1
3,798,134	-		DDA3937_RS16690	0.46	+2.0
3,798,134	-		DDA3937_RS16690	0.46	+0.3
3,798,219	-		DDA3937_RS16690	0.55	+1.2
3,798,262	+		DDA3937_RS16690	0.60	-0.4
3,798,263	-		DDA3937_RS16690	0.60	-3.3
3,798,263	-		DDA3937_RS16690	0.60	-2.1
3,798,394	+		DDA3937_RS16690	0.74	+1.3
3,798,400	+		DDA3937_RS16690	0.74	-2.4
3,798,401	-		DDA3937_RS16690	0.74	-2.7
3,798,401	-		DDA3937_RS16690	0.74	+1.3