Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,733,087	+				+1.1
3,733,088	-				+1.6
3,733,110	+				+1.0
3,733,156	+				+0.6
3,733,157	-				+0.3
3,733,500	+		DDA3937_RS16365	0.20	-1.7
3,733,500	+		DDA3937_RS16365	0.20	-0.2
3,733,500	+		DDA3937_RS16365	0.20	+1.6
3,733,501	-		DDA3937_RS16365	0.20	-2.4
3,733,593	+		DDA3937_RS16365	0.32	+0.0
3,733,593	+		DDA3937_RS16365	0.32	-0.4
3,733,593	+		DDA3937_RS16365	0.32	+0.9
3,733,593	+		DDA3937_RS16365	0.32	-0.8
3,733,593	+		DDA3937_RS16365	0.32	-3.6
3,733,593	+		DDA3937_RS16365	0.32	-1.0
3,733,593	+		DDA3937_RS16365	0.32	-0.1
3,733,593	+		DDA3937_RS16365	0.32	-0.5
3,733,593	+		DDA3937_RS16365	0.32	-2.8
3,733,593	+		DDA3937_RS16365	0.32	-1.0
3,733,593	+		DDA3937_RS16365	0.32	-0.7
3,733,593	+		DDA3937_RS16365	0.32	-2.0
3,733,594	-		DDA3937_RS16365	0.33	-1.0
3,733,594	-		DDA3937_RS16365	0.33	-0.1
3,733,594	-		DDA3937_RS16365	0.33	+0.2
3,733,594	-		DDA3937_RS16365	0.33	+1.2
3,733,594	-		DDA3937_RS16365	0.33	-2.5
3,733,647	+		DDA3937_RS16365	0.40	-1.7
3,733,647	+		DDA3937_RS16365	0.40	+0.7
3,733,648	-		DDA3937_RS16365	0.40	-0.3
3,733,648	-				+0.0
3,733,648	-		DDA3937_RS16365	0.40	-1.8
3,733,651	+		DDA3937_RS16365	0.40	-1.0
3,733,651	+		DDA3937_RS16365	0.40	+0.1
3,733,652	-		DDA3937_RS16365	0.40	-0.6
3,733,652	-		DDA3937_RS16365	0.40	+0.6
3,733,677	+		DDA3937_RS16365	0.44	-2.4
3,733,828	-		DDA3937_RS16365	0.65	-3.1
3,733,828	-		DDA3937_RS16365	0.65	+0.5
3,733,857	+		DDA3937_RS16365	0.69	+1.6
3,733,858	-		DDA3937_RS16365	0.69	-2.8
3,733,858	-		DDA3937_RS16365	0.69	-1.8
3,733,858	-		DDA3937_RS16365	0.69	-1.4
3,733,858	-		DDA3937_RS16365	0.69	+1.0
3,733,858	-		DDA3937_RS16365	0.69	-2.2
3,733,864	+		DDA3937_RS16365	0.70	-1.6
3,733,865	-		DDA3937_RS16365	0.70	-1.4
3,733,865	-		DDA3937_RS16365	0.70	-0.4
3,733,931	+		DDA3937_RS16365	0.79	-2.5
3,733,931	+		DDA3937_RS16365	0.79	-1.2
3,733,931	+		DDA3937_RS16365	0.79	-2.7
3,734,083	+				-0.7
3,734,083	+				+0.1
3,734,083	+				+0.0
3,734,083	+				+1.1
3,734,084	-				-2.0
3,734,084	-				-0.7
3,734,084	-				-2.1
3,734,127	-				+0.3
3,734,160	-				-1.7
3,734,238	-				+0.7
3,734,331	+		DDA3937_RS16370	0.15	+0.1
3,734,426	-		DDA3937_RS16370	0.21	-1.3
3,734,426	-		DDA3937_RS16370	0.21	+1.7
3,734,462	+		DDA3937_RS16370	0.23	-2.5
3,734,463	-		DDA3937_RS16370	0.23	-1.7
3,734,463	-		DDA3937_RS16370	0.23	+0.4
3,734,463	-		DDA3937_RS16370	0.23	-0.6
3,734,496	+		DDA3937_RS16370	0.25	-3.4
3,734,496	+		DDA3937_RS16370	0.25	+0.9
3,734,497	-		DDA3937_RS16370	0.25	+0.8
3,734,497	-		DDA3937_RS16370	0.25	-0.7
3,734,497	-		DDA3937_RS16370	0.25	+0.8
3,734,691	-		DDA3937_RS16370	0.36	+1.8
3,734,731	-		DDA3937_RS16370	0.39	+0.7
3,734,783	+		DDA3937_RS16370	0.42	-1.7
3,734,783	+		DDA3937_RS16370	0.42	+2.1
3,734,783	+		DDA3937_RS16370	0.42	-2.2
3,734,783	+		DDA3937_RS16370	0.42	-1.8
3,734,784	-		DDA3937_RS16370	0.42	-1.7
3,734,848	+		DDA3937_RS16370	0.46	-4.1
3,734,879	+		DDA3937_RS16370	0.47	+0.6
3,734,880	-		DDA3937_RS16370	0.47	-0.7
3,734,903	+		DDA3937_RS16370	0.49	+0.6
3,734,952	+		DDA3937_RS16370	0.52	+1.7
3,734,953	-		DDA3937_RS16370	0.52	+0.9
3,735,050	+				-0.7
3,735,051	-		DDA3937_RS16370	0.58	-1.2
3,735,051	-		DDA3937_RS16370	0.58	-2.2
3,735,105	+		DDA3937_RS16370	0.61	+1.2
3,735,106	-		DDA3937_RS16370	0.61	+3.3
3,735,158	+		DDA3937_RS16370	0.64	-4.0
3,735,199	-		DDA3937_RS16370	0.66	-1.4
3,735,252	+		DDA3937_RS16370	0.69	-1.6
3,735,297	+		DDA3937_RS16370	0.72	+0.8
3,735,298	-		DDA3937_RS16370	0.72	+0.6
3,735,298	-		DDA3937_RS16370	0.72	-1.0
3,735,345	+		DDA3937_RS16370	0.75	+0.4
3,735,346	-		DDA3937_RS16370	0.75	+1.2
3,735,402	+		DDA3937_RS16370	0.78	+0.4
3,735,438	+		DDA3937_RS16370	0.80	-2.1
3,735,438	+		DDA3937_RS16370	0.80	-1.2
3,735,438	+		DDA3937_RS16370	0.80	+0.2
3,735,438	+		DDA3937_RS16370	0.80	-3.1
3,735,438	+		DDA3937_RS16370	0.80	-2.4
3,735,438	+		DDA3937_RS16370	0.80	-2.1
3,735,439	-		DDA3937_RS16370	0.80	+0.3
3,735,439	-		DDA3937_RS16370	0.80	+1.3
3,735,593	+		DDA3937_RS16370	0.90	-0.7
3,735,594	-				+3.9
3,735,594	-		DDA3937_RS16370	0.90	-1.0
3,735,630	-				-1.9
3,735,704	+				-2.6
3,735,704	+				-0.1
3,735,704	+				-1.8
3,735,746	-				-2.2
3,735,764	+				+0.6
3,735,764	+				-0.4
3,735,764	+				-3.1
3,735,764	+				-1.2
3,735,764	+				+2.4
3,735,764	+				-1.4
3,735,764	+				+1.8
3,735,765	-				-1.2
3,735,765	-				-1.6
3,735,765	-				+0.0
3,735,765	-				+1.3
3,735,765	-				+1.1
3,735,765	-				+0.2
3,735,765	-				+0.3
3,735,765	-				+0.4
3,735,771	+				-1.6
3,735,772	-				+1.1
3,735,772	-				-2.4
3,735,825	+				-1.4
3,735,826	-				-0.4
3,735,830	+				-1.4
3,735,830	+				-2.6
3,735,849	+				-2.9
3,735,868	+				-0.7
3,735,868	+				-2.9
3,735,868	+				-3.0
3,735,869	-				+0.6
3,735,869	-				-0.4
3,735,869	-				+0.0
3,735,869	-				-2.3
3,735,869	-				+0.6
3,735,869	-				+0.2
3,735,869	-				-1.1
3,735,869	-				-2.9
3,735,874	+				-1.6
3,735,874	+				+0.3
3,735,874	+				-3.4
3,735,874	+				-2.4
3,735,875	-				-3.0
3,735,875	-				+1.5
3,735,893	-				+1.4
3,735,893	-				-1.1
3,735,997	-				-0.4
3,736,011	+				-0.6
3,736,012	-				-2.2
3,736,012	-				-1.8
3,736,073	+				-2.5
3,736,073	+				-1.6
3,736,073	+				-1.7
3,736,073	+				-0.4
3,736,073	+				-3.4
3,736,073	+				-2.3
3,736,073	+				-2.1
3,736,074	-				+0.2
3,736,074	-				+1.6
3,736,074	-				-2.3
3,736,074	-				-3.4
3,736,074	-				+1.6
3,736,074	-				+1.2
3,736,159	-		DDA3937_RS16375	0.14	+0.6
3,736,257	-		DDA3937_RS16375	0.26	-3.2
3,736,257	-		DDA3937_RS16375	0.26	-3.2
3,736,277	+		DDA3937_RS16375	0.29	-3.3
3,736,277	+		DDA3937_RS16375	0.29	+0.0
3,736,392	-		DDA3937_RS16375	0.44	+2.4
3,736,392	-				-0.4
3,736,460	+		DDA3937_RS16375	0.52	-0.7
3,736,460	+		DDA3937_RS16375	0.52	-0.8
3,736,520	+		DDA3937_RS16375	0.60	-2.0
3,736,731	+		DDA3937_RS16375	0.87	-0.4
3,736,731	+		DDA3937_RS16375	0.87	-1.8
3,736,731	+		DDA3937_RS16375	0.87	-0.9
3,736,732	-		DDA3937_RS16375	0.88	-2.5
3,736,732	-		DDA3937_RS16375	0.88	+1.3
3,736,733	+		DDA3937_RS16375	0.88	-2.0
3,736,733	+		DDA3937_RS16375	0.88	-2.3
3,736,734	-		DDA3937_RS16375	0.88	+0.9
3,736,734	-		DDA3937_RS16375	0.88	+0.8