Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15770

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,610,771	-				+2.4
3,610,771	-				+3.2
3,610,771	-				+0.3
3,610,794	-				-1.9
3,610,800	-				+1.7
3,610,800	-				+0.6
3,610,800	-				+1.6
3,610,811	-				-0.3
3,610,836	-				-2.9
3,610,836	-				-0.4
3,610,838	+				-0.7
3,610,839	-				+0.2
3,610,863	+				-2.6
3,610,865	+				-4.0
3,610,865	+				-0.6
3,610,866	-				-2.0
3,610,866	-				-2.6
3,610,918	+		DDA3937_RS15765	0.19	-2.8
3,610,918	+		DDA3937_RS15765	0.19	-1.9
3,610,919	-		DDA3937_RS15765	0.19	-3.3
3,610,919	-		DDA3937_RS15765	0.19	-3.5
3,610,919	-		DDA3937_RS15765	0.19	-3.5
3,610,919	-		DDA3937_RS15765	0.19	-1.1
3,610,946	+		DDA3937_RS15765	0.24	-1.7
3,610,946	+		DDA3937_RS15765	0.24	-1.4
3,610,947	-		DDA3937_RS15765	0.24	-2.7
3,610,947	-		DDA3937_RS15765	0.24	-3.9
3,610,947	-		DDA3937_RS15765	0.24	-1.2
3,610,947	-		DDA3937_RS15765	0.24	-3.9
3,610,947	-		DDA3937_RS15765	0.24	+0.4
3,610,947	-		DDA3937_RS15765	0.24	-3.0
3,610,982	+		DDA3937_RS15765	0.30	-0.6
3,610,983	-		DDA3937_RS15765	0.30	+0.4
3,610,983	-		DDA3937_RS15765	0.30	-2.3
3,610,985	+		DDA3937_RS15765	0.31	-2.9
3,610,985	+		DDA3937_RS15765	0.31	-2.6
3,610,985	+		DDA3937_RS15765	0.31	-2.2
3,610,986	-		DDA3937_RS15765	0.31	-0.4
3,611,004	+		DDA3937_RS15765	0.34	-0.7
3,611,004	+		DDA3937_RS15765	0.34	-5.0
3,611,022	+		DDA3937_RS15765	0.37	-2.9
3,611,022	+		DDA3937_RS15765	0.37	-2.9
3,611,022	+		DDA3937_RS15765	0.37	-3.5
3,611,022	+		DDA3937_RS15765	0.37	-2.0
3,611,023	-		DDA3937_RS15765	0.37	-2.8
3,611,023	-		DDA3937_RS15765	0.37	-1.8
3,611,023	-		DDA3937_RS15765	0.37	-1.1
3,611,023	-		DDA3937_RS15765	0.37	-3.6
3,611,023	-		DDA3937_RS15765	0.37	-3.8
3,611,023	-		DDA3937_RS15765	0.37	-2.6
3,611,023	-		DDA3937_RS15765	0.37	-0.6
3,611,023	-		DDA3937_RS15765	0.37	-3.4
3,611,100	-		DDA3937_RS15765	0.51	-2.1
3,611,100	-		DDA3937_RS15765	0.51	-2.4
3,611,132	-		DDA3937_RS15765	0.56	-3.4
3,611,156	+		DDA3937_RS15765	0.60	-1.7
3,611,156	+		DDA3937_RS15765	0.60	+0.2
3,611,156	+		DDA3937_RS15765	0.60	-1.1
3,611,156	+		DDA3937_RS15765	0.60	-1.4
3,611,157	-		DDA3937_RS15765	0.60	-2.5
3,611,157	-		DDA3937_RS15765	0.60	-2.1
3,611,161	+		DDA3937_RS15765	0.61	-2.9
3,611,161	+		DDA3937_RS15765	0.61	-3.8
3,611,162	-		DDA3937_RS15765	0.61	-3.6
3,611,163	+		DDA3937_RS15765	0.61	-2.0
3,611,163	+		DDA3937_RS15765	0.61	-1.6
3,611,163	+		DDA3937_RS15765	0.61	-2.6
3,611,163	+		DDA3937_RS15765	0.61	-2.8
3,611,163	+		DDA3937_RS15765	0.61	-1.0
3,611,164	-		DDA3937_RS15765	0.62	-3.0
3,611,164	-		DDA3937_RS15765	0.62	-1.6
3,611,164	-		DDA3937_RS15765	0.62	-3.8
3,611,164	-		DDA3937_RS15765	0.62	-4.5
3,611,164	-		DDA3937_RS15765	0.62	-2.0
3,611,164	-		DDA3937_RS15765	0.62	-2.7
3,611,173	+		DDA3937_RS15765	0.63	-2.6
3,611,173	+		DDA3937_RS15765	0.63	-3.0
3,611,174	-		DDA3937_RS15765	0.63	-3.4
3,611,212	+		DDA3937_RS15765	0.70	-1.0
3,611,213	-		DDA3937_RS15765	0.70	-1.0
3,611,222	+		DDA3937_RS15765	0.72	-0.1
3,611,222	+		DDA3937_RS15765	0.72	-1.0
3,611,223	-		DDA3937_RS15765	0.72	-2.3
3,611,239	-		DDA3937_RS15765	0.75	-3.2
3,611,239	-		DDA3937_RS15765	0.75	-3.4
3,611,267	-		DDA3937_RS15765	0.80	-3.0
3,611,267	-		DDA3937_RS15765	0.80	-2.3
3,611,267	-		DDA3937_RS15765	0.80	-3.5
3,611,267	-		DDA3937_RS15765	0.80	-1.3
3,611,291	+		DDA3937_RS15765	0.84	-2.0
3,611,292	-		DDA3937_RS15765	0.84	-2.3
3,611,292	-		DDA3937_RS15765	0.84	-3.9
3,611,292	-		DDA3937_RS15765	0.84	-2.1
3,611,292	-		DDA3937_RS15765	0.84	-2.9
3,611,313	+		DDA3937_RS15765	0.88	-2.6
3,611,314	-		DDA3937_RS15765	0.88	-4.1
3,611,319	-		DDA3937_RS15765	0.89	-0.7
3,611,371	-				-2.8
3,611,431	+				+0.4
3,611,431	+				-1.4
3,611,431	+				-3.2
3,611,431	+				-1.8
3,611,431	+				-0.9
3,611,431	+				-0.4
3,611,432	-				-0.4
3,611,441	+				-2.9
3,611,441	+				+0.0
3,611,441	+				+2.0
3,611,441	+				-1.2
3,611,441	+				-2.6
3,611,441	+				-1.2
3,611,442	-				-0.3
3,611,442	-				-1.2
3,611,442	-				+0.6
3,611,443	+				-1.4
3,611,443	+				-1.2
3,611,443	+				-3.2
3,611,443	+				-2.4
3,611,443	+				-3.2
3,611,443	+				-1.9
3,611,443	+				-0.4
3,611,443	+				-1.4
3,611,443	+				-1.9
3,611,443	+				-2.9
3,611,444	-				-1.0
3,611,444	-				-1.2
3,611,445	+				-0.7
3,611,490	-				+1.4
3,611,490	-				+0.6
3,611,529	+				-1.1
3,611,530	-				-3.0
3,611,555	+				-0.7
3,611,574	+				+1.6
3,611,574	+				-2.2
3,611,574	+				-1.9
3,611,575	-				+0.6
3,611,591	+				-0.5
3,611,592	-				-2.4
3,611,622	+				-0.4
3,611,622	+				-0.9
3,611,727	-				-1.4
3,611,729	+				+3.3
3,611,729	+				+0.0
3,611,729	+				-0.2
3,611,729	+				+1.3
3,611,729	+				+1.2
3,611,730	-				+1.6
3,611,748	+				-1.6
3,611,748	+				-1.4
3,611,871	+				-0.3
3,611,871	+				+1.2
3,611,871	+				-1.6
3,611,871	+				+2.5
3,611,872	-				-0.7
3,611,936	+		DDA3937_RS15770	0.13	+1.5
3,612,173	-		DDA3937_RS15770	0.28	+1.4
3,612,193	+		DDA3937_RS15770	0.29	-0.1
3,612,193	+		DDA3937_RS15770	0.29	-0.4
3,612,193	+		DDA3937_RS15770	0.29	-2.9
3,612,194	-		DDA3937_RS15770	0.29	-1.6
3,612,269	-		DDA3937_RS15770	0.34	-0.9
3,612,276	+		DDA3937_RS15770	0.34	+0.1
3,612,276	+		DDA3937_RS15770	0.34	-0.5
3,612,276	+		DDA3937_RS15770	0.34	+0.0
3,612,276	+		DDA3937_RS15770	0.34	+3.2
3,612,276	+		DDA3937_RS15770	0.34	+0.7
3,612,276	+		DDA3937_RS15770	0.34	+3.0
3,612,277	-		DDA3937_RS15770	0.34	+0.7
3,612,277	-		DDA3937_RS15770	0.34	+0.9
3,612,361	-		DDA3937_RS15770	0.39	-0.7
3,612,361	-		DDA3937_RS15770	0.39	-1.0
3,612,366	+		DDA3937_RS15770	0.40	-2.4
3,612,366	+		DDA3937_RS15770	0.40	-2.9
3,612,367	-		DDA3937_RS15770	0.40	+1.3
3,612,367	-		DDA3937_RS15770	0.40	-1.4
3,612,474	+		DDA3937_RS15770	0.46	+0.5
3,612,475	-		DDA3937_RS15770	0.47	-2.4
3,612,560	+		DDA3937_RS15770	0.52	+3.9
3,612,561	-		DDA3937_RS15770	0.52	-0.5
3,612,576	-		DDA3937_RS15770	0.53	+0.6
3,612,657	+		DDA3937_RS15770	0.58	-0.7
3,612,657	+		DDA3937_RS15770	0.58	-1.7
3,612,657	+		DDA3937_RS15770	0.58	-2.0
3,612,657	+		DDA3937_RS15770	0.58	-1.2
3,612,657	+		DDA3937_RS15770	0.58	+0.8
3,612,657	+		DDA3937_RS15770	0.58	+0.6
3,612,658	-		DDA3937_RS15770	0.58	-0.6
3,612,658	-		DDA3937_RS15770	0.58	-2.5
3,612,711	-		DDA3937_RS15770	0.61	+0.6
3,612,783	+		DDA3937_RS15770	0.66	-0.7
3,612,783	+		DDA3937_RS15770	0.66	-2.4
3,612,783	+		DDA3937_RS15770	0.66	-0.9
3,612,783	+		DDA3937_RS15770	0.66	-0.2
3,612,783	+		DDA3937_RS15770	0.66	-0.1
3,612,783	+		DDA3937_RS15770	0.66	-2.0
3,612,784	-		DDA3937_RS15770	0.66	+1.0
3,612,861	+		DDA3937_RS15770	0.71	-0.4
3,612,861	+		DDA3937_RS15770	0.71	+2.3
3,612,861	+		DDA3937_RS15770	0.71	-2.1
3,612,862	-		DDA3937_RS15770	0.71	-2.6
3,612,862	-		DDA3937_RS15770	0.71	-2.1
3,612,921	+		DDA3937_RS15770	0.74	+0.9
3,612,921	+		DDA3937_RS15770	0.74	+1.2
3,612,921	+		DDA3937_RS15770	0.74	+0.1
3,612,922	-		DDA3937_RS15770	0.74	+0.5
3,612,922	-		DDA3937_RS15770	0.74	-2.3
3,612,922	-		DDA3937_RS15770	0.74	+0.7
3,612,922	-		DDA3937_RS15770	0.74	-2.6
3,612,922	-		DDA3937_RS15770	0.74	+0.4
3,612,922	-		DDA3937_RS15770	0.74	+1.8
3,612,922	-		DDA3937_RS15770	0.74	-1.2
3,613,057	+		DDA3937_RS15770	0.83	-0.4
3,613,057	+		DDA3937_RS15770	0.83	+2.0
3,613,057	+		DDA3937_RS15770	0.83	+0.0
3,613,057	+		DDA3937_RS15770	0.83	+3.3
3,613,058	-		DDA3937_RS15770	0.83	-1.6
3,613,058	-		DDA3937_RS15770	0.83	-2.6
3,613,058	-		DDA3937_RS15770	0.83	-1.0
3,613,058	-		DDA3937_RS15770	0.83	-3.3
3,613,058	-		DDA3937_RS15770	0.83	+0.8
3,613,058	-		DDA3937_RS15770	0.83	-1.9
3,613,077	+		DDA3937_RS15770	0.84	+0.5
3,613,077	+		DDA3937_RS15770	0.84	-2.3
3,613,078	-		DDA3937_RS15770	0.84	-1.0
3,613,094	+		DDA3937_RS15770	0.85	-2.0
3,613,095	-		DDA3937_RS15770	0.85	+1.4
3,613,128	-		DDA3937_RS15770	0.87	-0.2
3,613,128	-		DDA3937_RS15770	0.87	+0.0
3,613,138	+		DDA3937_RS15770	0.88	-0.2
3,613,158	+		DDA3937_RS15770	0.89	-1.3
3,613,158	+		DDA3937_RS15770	0.89	-0.4
3,613,158	+		DDA3937_RS15770	0.89	-2.4
3,613,159	-		DDA3937_RS15770	0.89	-2.3
3,613,161	+		DDA3937_RS15770	0.89	-0.4
3,613,162	-		DDA3937_RS15770	0.89	+2.5
3,613,162	-		DDA3937_RS15770	0.89	-1.4
3,613,162	-		DDA3937_RS15770	0.89	-1.4
3,613,162	-		DDA3937_RS15770	0.89	-2.4
3,613,162	-		DDA3937_RS15770	0.89	-2.8
3,613,162	-		DDA3937_RS15770	0.89	-2.4
3,613,231	+				+0.5
3,613,231	+				+0.6
3,613,231	+				+1.7
3,613,272	+				-1.6
3,613,272	+				+0.0
3,613,273	-				-1.9
3,613,313	+				-4.0
3,613,313	+				+0.5
3,613,313	+				-0.7
3,613,314	-				-0.4
3,613,391	+				+0.2
3,613,392	-				+0.4
3,613,453	+		DDA3937_RS15775	0.10	-1.2
3,613,528	-		DDA3937_RS15775	0.20	-1.5
3,613,692	-		DDA3937_RS15775	0.42	-1.3
3,613,738	-		DDA3937_RS15775	0.48	-1.4
3,613,742	+		DDA3937_RS15775	0.49	-0.2
3,613,742	+		DDA3937_RS15775	0.49	+0.2
3,613,743	-		DDA3937_RS15775	0.49	-0.0
3,613,743	-		DDA3937_RS15775	0.49	+0.3
3,614,076	+				+1.0
3,614,103	+				+1.3
3,614,103	+				-1.6
3,614,103	+				+0.5
3,614,103	+				+1.5
3,614,104	-				+1.0
3,614,104	-				+1.8
3,614,104	-				+0.4
3,614,104	-				-3.2
3,614,104	-				+0.7
3,614,104	-				-0.7
3,614,134	+				-2.1
3,614,134	+				-1.2
3,614,135	-				-3.1
3,614,152	-				-0.2
3,614,156	+				-2.0
3,614,156	+				-0.2
3,614,190	-				+0.3
3,614,226	+				-1.5
3,614,226	+				+1.0
3,614,226	+				+0.6
3,614,226	+				+1.7
3,614,226	+				-1.5
3,614,227	-				+0.4
3,614,227	-				-3.2
3,614,227	-				+1.0
3,614,227	-				-3.0
3,614,228	+				+2.5
3,614,228	+				+0.1
3,614,228	+				-1.2
3,614,229	-				-1.2
3,614,229	-				-0.0
3,614,229	-				-1.4
3,614,250	+				+3.1
3,614,250	+				-0.2
3,614,250	+				-1.9
3,614,250	+				+1.8
3,614,251	-				-1.2
3,614,251	-				+0.0
3,614,251	-				-0.8
3,614,251	-				-0.4