Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15220

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,486,651	+		DDA3937_RS15210	0.56	-2.1
3,486,652	-		DDA3937_RS15210	0.56	+0.8
3,486,746	+		DDA3937_RS15210	0.70	-0.1
3,486,778	+		DDA3937_RS15210	0.75	-0.2
3,486,779	-		DDA3937_RS15210	0.75	-2.6
3,486,808	+		DDA3937_RS15210	0.80	-2.7
3,486,809	-		DDA3937_RS15210	0.80	-0.8
3,486,809	-		DDA3937_RS15210	0.80	-0.1
3,486,818	-		DDA3937_RS15210	0.81	-2.6
3,486,863	+		DDA3937_RS15210	0.88	-1.8
3,487,042	+				-0.6
3,487,042	+				-0.8
3,487,043	-				-1.6
3,487,045	-				-2.1
3,487,045	-				+1.2
3,487,045	-				+2.0
3,487,071	+				-1.2
3,487,192	-		DDA3937_RS15215	0.28	+1.4
3,487,255	+		DDA3937_RS15215	0.41	+1.7
3,487,255	+		DDA3937_RS15215	0.41	+1.7
3,487,255	+		DDA3937_RS15215	0.41	-2.3
3,487,256	-		DDA3937_RS15215	0.42	-0.4
3,487,256	-		DDA3937_RS15215	0.42	-0.1
3,487,256	-		DDA3937_RS15215	0.42	-2.0
3,487,445	+		DDA3937_RS15215	0.83	+0.5
3,487,446	-				-0.8
3,487,492	-				+0.6
3,487,501	-				+2.2
3,487,521	+				+0.7
3,487,521	+				-3.2
3,487,521	+				-1.1
3,487,522	-				-2.4
3,487,581	-				+0.0
3,487,586	-				+1.3
3,487,586	-				+0.6
3,487,586	-				-1.2
3,487,586	-				-1.2
3,487,586	-				+0.4
3,487,586	-				+1.2
3,487,586	-				-1.8
3,487,586	-				-1.6
3,487,675	+				-0.4
3,487,676	-				-3.2
3,487,676	-				-0.5
3,487,676	-				-2.2
3,487,676	-				-2.2
3,487,676	-				-3.5
3,487,717	+				-1.6
3,487,717	+				-1.0
3,487,717	+				-1.2
3,487,717	+				+1.0
3,487,717	+				-3.4
3,487,718	-				-1.7
3,487,718	-				+1.0
3,487,718	-				-0.4
3,487,718	-				+0.5
3,487,718	-				+0.1
3,487,718	-				+1.8
3,487,718	-				-0.4
3,487,719	+				-3.7
3,487,719	+				-1.2
3,487,719	+				-1.2
3,487,719	+				-1.6
3,487,719	+				-1.3
3,487,720	-				-1.8
3,487,720	-				+2.0
3,487,720	-				-0.8
3,487,720	-				+2.6
3,487,846	+		DDA3937_RS15220	0.12	-1.8
3,487,846	+		DDA3937_RS15220	0.12	-0.8
3,487,846	+		DDA3937_RS15220	0.12	+1.3
3,487,846	+		DDA3937_RS15220	0.12	-1.9
3,487,846	+		DDA3937_RS15220	0.12	+2.1
3,487,847	-		DDA3937_RS15220	0.12	+1.6
3,487,877	+		DDA3937_RS15220	0.14	+1.1
3,487,877	+		DDA3937_RS15220	0.14	-1.6
3,487,878	-		DDA3937_RS15220	0.14	+1.7
3,487,878	-		DDA3937_RS15220	0.14	+2.9
3,487,942	-		DDA3937_RS15220	0.17	-1.8
3,487,990	+		DDA3937_RS15220	0.19	-2.1
3,487,991	-				-1.0
3,487,991	-				-0.0
3,488,144	+		DDA3937_RS15220	0.26	+1.6
3,488,152	+		DDA3937_RS15220	0.27	+1.2
3,488,152	+		DDA3937_RS15220	0.27	+1.0
3,488,153	-		DDA3937_RS15220	0.27	-0.7
3,488,153	-		DDA3937_RS15220	0.27	-2.2
3,488,153	-		DDA3937_RS15220	0.27	+0.6
3,488,153	-		DDA3937_RS15220	0.27	-0.2
3,488,334	-		DDA3937_RS15220	0.36	+0.3
3,488,357	+		DDA3937_RS15220	0.37	+1.3
3,488,357	+		DDA3937_RS15220	0.37	+0.7
3,488,357	+		DDA3937_RS15220	0.37	+2.2
3,488,357	+		DDA3937_RS15220	0.37	-1.4
3,488,358	-		DDA3937_RS15220	0.37	-0.4
3,488,358	-		DDA3937_RS15220	0.37	-1.6
3,489,081	+		DDA3937_RS15220	0.72	-3.6
3,489,150	+		DDA3937_RS15220	0.75	-0.6
3,489,151	-		DDA3937_RS15220	0.75	-1.3
3,489,151	-		DDA3937_RS15220	0.75	+1.4
3,489,151	-		DDA3937_RS15220	0.75	-1.0
3,489,177	+		DDA3937_RS15220	0.77	+1.0
3,489,190	+		DDA3937_RS15220	0.77	-1.1
3,489,190	+		DDA3937_RS15220	0.77	-3.0
3,489,190	+				-0.0
3,489,190	+		DDA3937_RS15220	0.77	-3.9
3,489,191	-		DDA3937_RS15220	0.77	-0.3
3,489,191	-		DDA3937_RS15220	0.77	-0.8
3,489,191	-		DDA3937_RS15220	0.77	+1.2
3,489,191	-		DDA3937_RS15220	0.77	+0.1
3,489,191	-		DDA3937_RS15220	0.77	-1.9
3,489,351	+		DDA3937_RS15220	0.85	+1.3
3,489,351	+		DDA3937_RS15220	0.85	-2.1
3,489,351	+		DDA3937_RS15220	0.85	-0.8
3,489,351	+		DDA3937_RS15220	0.85	-2.2
3,489,352	-		DDA3937_RS15220	0.85	-3.0
3,489,352	-		DDA3937_RS15220	0.85	+1.5
3,489,536	+				-2.6
3,489,536	+				+0.8
3,489,550	+				-0.6
3,489,550	+				+0.6
3,489,550	+				-0.4
3,489,550	+				-0.0
3,489,551	-				-2.0
3,489,551	-				-0.8
3,489,551	-				+1.0
3,489,695	+				+0.5
3,489,695	+				-1.3
3,489,695	+				-2.0
3,489,696	-				+0.2
3,489,700	+				-0.6
3,489,700	+				+0.5
3,489,741	+				-3.8
3,489,742	-				-2.6
3,489,758	+				+1.2
3,489,758	+				-1.2
3,489,800	+				-2.9
3,489,800	+				-4.0
3,489,806	+				-0.4
3,489,807	-				-1.6
3,489,820	+				-1.9
3,489,820	+				-1.6
3,489,821	-				-1.6
3,489,824	+				+2.6
3,489,824	+				-1.2
3,489,824	+				-1.8
3,489,825	-				-0.5
3,489,825	-				-0.6
3,489,825	-				-1.0
3,489,825	-				+0.8
3,489,904	+		DDA3937_RS15225	0.21	+1.4
3,489,905	-		DDA3937_RS15225	0.21	-1.2
3,489,908	+		DDA3937_RS15225	0.22	-0.6
3,489,908	+		DDA3937_RS15225	0.22	-0.6
3,489,909	-		DDA3937_RS15225	0.22	-0.6
3,489,909	-		DDA3937_RS15225	0.22	-2.0
3,489,909	-		DDA3937_RS15225	0.22	-4.8
3,490,314	+				-2.2
3,490,315	-				-1.8
3,490,315	-				+0.9
3,490,315	-				-1.2
3,490,315	-				-1.2
3,490,332	+				+2.0
3,490,332	+				+3.2
3,490,333	-				-0.0
3,490,333	-				-1.8
3,490,334	+				-3.2
3,490,479	-				-2.4
3,490,479	-				-1.7
3,490,479	-				-0.8
3,490,490	+				-0.8
3,490,490	+				-0.8
3,490,490	+				+0.7
3,490,490	+				+3.2
3,490,490	+				-1.2
3,490,536	+		DDA3937_RS15230	0.12	-1.2
3,490,537	-		DDA3937_RS15230	0.12	-2.6
3,490,553	-		DDA3937_RS15230	0.13	-3.5
3,490,553	-		DDA3937_RS15230	0.13	+0.7
3,490,589	+		DDA3937_RS15230	0.14	-0.9
3,490,590	-		DDA3937_RS15230	0.14	-3.0
3,490,656	+		DDA3937_RS15230	0.17	-2.2
3,490,656	+		DDA3937_RS15230	0.17	-2.5
3,490,656	+		DDA3937_RS15230	0.17	-0.8
3,490,656	+		DDA3937_RS15230	0.17	-1.7