Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,436,486	+		DDA3937_RS14975	0.32	+1.2
3,436,513	-		DDA3937_RS14975	0.34	-1.6
3,436,607	+		DDA3937_RS14975	0.41	-1.2
3,436,607	+		DDA3937_RS14975	0.41	-1.4
3,436,608	-		DDA3937_RS14975	0.41	-0.8
3,436,608	-		DDA3937_RS14975	0.41	-0.1
3,436,610	+		DDA3937_RS14975	0.41	+0.2
3,436,678	-		DDA3937_RS14975	0.46	-0.1
3,436,678	-		DDA3937_RS14975	0.46	-3.4
3,436,678	-		DDA3937_RS14975	0.46	-0.1
3,436,874	-		DDA3937_RS14975	0.59	-1.6
3,436,964	+		DDA3937_RS14975	0.66	-1.4
3,437,004	+		DDA3937_RS14975	0.68	+0.9
3,437,005	-		DDA3937_RS14975	0.69	-0.0
3,437,008	-		DDA3937_RS14975	0.69	-1.9
3,437,100	+		DDA3937_RS14975	0.75	-1.0
3,437,100	+		DDA3937_RS14975	0.75	-1.6
3,437,112	+		DDA3937_RS14975	0.76	+0.4
3,437,112	+		DDA3937_RS14975	0.76	-1.0
3,437,112	+		DDA3937_RS14975	0.76	-2.0
3,437,115	+		DDA3937_RS14975	0.76	-0.4
3,437,188	-		DDA3937_RS14975	0.81	-0.6
3,437,250	-		DDA3937_RS14975	0.86	+2.7
3,437,250	-		DDA3937_RS14975	0.86	+0.2
3,437,256	+		DDA3937_RS14975	0.86	+0.7
3,437,256	+		DDA3937_RS14975	0.86	+1.1
3,437,265	+				-0.4
3,437,269	-		DDA3937_RS14975	0.87	-0.8
3,437,311	+				+1.8
3,437,311	+				-1.0
3,437,311	+				-0.7
3,437,311	+				-3.4
3,437,311	+				-2.7
3,437,312	-				-1.8
3,437,312	-				-2.5
3,437,437	+				+0.4
3,437,437	+				+1.8
3,437,438	-				-2.4
3,437,438	-				-2.6
3,437,438	-				-0.6
3,437,438	-				-1.9
3,437,512	+				-0.2
3,437,588	-				-0.4
3,437,588	-				+0.5
3,437,629	+		DDA3937_RS14980	0.12	-0.3
3,437,629	+		DDA3937_RS14980	0.12	-2.8
3,437,640	+		DDA3937_RS14980	0.13	-1.5
3,437,854	+		DDA3937_RS14980	0.27	+2.3
3,437,883	-		DDA3937_RS14980	0.29	+0.3
3,438,018	+		DDA3937_RS14980	0.38	+0.8
3,438,171	-		DDA3937_RS14980	0.49	-0.1
3,438,339	+		DDA3937_RS14980	0.60	-1.6
3,438,339	+		DDA3937_RS14980	0.60	-3.0
3,438,339	+		DDA3937_RS14980	0.60	+1.7
3,438,340	-		DDA3937_RS14980	0.60	-3.0
3,438,340	-		DDA3937_RS14980	0.60	+1.3
3,438,370	+		DDA3937_RS14980	0.62	-0.0
3,438,370	+		DDA3937_RS14980	0.62	+0.8
3,438,371	-		DDA3937_RS14980	0.62	-1.2
3,438,371	-		DDA3937_RS14980	0.62	-2.2
3,438,371	-		DDA3937_RS14980	0.62	-1.8
3,438,392	-		DDA3937_RS14980	0.64	+0.1
3,438,393	+		DDA3937_RS14980	0.64	-1.4
3,438,393	+		DDA3937_RS14980	0.64	+2.8
3,438,393	+		DDA3937_RS14980	0.64	+1.3
3,438,400	-		DDA3937_RS14980	0.64	-0.3
3,438,411	+		DDA3937_RS14980	0.65	+0.7
3,438,411	+		DDA3937_RS14980	0.65	+0.4
3,438,411	+		DDA3937_RS14980	0.65	-1.2
3,438,411	+		DDA3937_RS14980	0.65	-1.8
3,438,411	+		DDA3937_RS14980	0.65	-2.0
3,438,412	-		DDA3937_RS14980	0.65	-0.0
3,438,412	-		DDA3937_RS14980	0.65	-2.8
3,438,412	-		DDA3937_RS14980	0.65	-2.8
3,438,412	-		DDA3937_RS14980	0.65	+2.8
3,438,412	-		DDA3937_RS14980	0.65	-1.8
3,438,519	-		DDA3937_RS14980	0.72	-1.4
3,438,519	-		DDA3937_RS14980	0.72	-0.8
3,438,521	+		DDA3937_RS14980	0.72	+2.3
3,438,521	+		DDA3937_RS14980	0.72	+0.5
3,438,521	+		DDA3937_RS14980	0.72	+0.4
3,438,521	+		DDA3937_RS14980	0.72	-2.4
3,438,522	-		DDA3937_RS14980	0.72	-1.2
3,438,522	-		DDA3937_RS14980	0.72	-1.3
3,438,522	-		DDA3937_RS14980	0.72	-1.6
3,438,522	-		DDA3937_RS14980	0.72	-1.7
3,438,682	+		DDA3937_RS14980	0.83	+0.1
3,438,683	-		DDA3937_RS14980	0.83	+1.6
3,438,683	-		DDA3937_RS14980	0.83	-2.4
3,438,814	-				-2.2
3,438,868	+				+2.2
3,438,871	+				-0.8
3,438,871	+				-3.5
3,438,871	+				-1.2
3,438,872	-				+0.3
3,438,872	-				+0.9
3,438,872	-				+0.9
3,438,872	-				-0.4
3,438,872	-				+0.0
3,438,872	-				+1.1
3,438,904	-				+2.3
3,438,904	-				+0.5
3,438,909	-				-3.3
3,438,909	-				-1.2
3,439,000	+				-2.1
3,439,026	+				-1.9
3,439,026	+				-2.1
3,439,026	+				-1.8
3,439,027	-				-3.1
3,439,027	-				-2.8
3,439,027	-				-1.5
3,439,027	-				-1.2
3,439,027	-				-2.7
3,439,027	-				-0.4
3,439,027	-				-1.9
3,439,027	-				-2.7
3,439,027	-				-0.9
3,439,027	-				-2.4
3,439,046	+				-0.0
3,439,050	+				-0.4
3,439,050	+				+0.6
3,439,050	+				+0.6
3,439,050	+				-2.2
3,439,050	+				-1.0
3,439,051	-				-3.1
3,439,051	-				+0.9
3,439,069	+				-1.4
3,439,070	-				+0.8
3,439,070	-				-0.1
3,439,073	+				+0.9
3,439,074	-				-1.1
3,439,091	+				+1.0
3,439,091	+				-0.3
3,439,092	-				+2.0
3,439,092	-				-0.4
3,439,092	-				+1.0
3,439,092	-				-0.8
3,439,092	-				-0.8
3,439,121	-				-3.7
3,439,134	-				-1.4
3,439,134	-				-1.3
3,439,134	-				+1.3
3,439,134	-				+0.3
3,439,275	+				+1.6
3,439,346	-		DDA3937_RS14985	0.38	-2.1
3,439,375	-		DDA3937_RS14985	0.43	-1.4
3,439,391	+		DDA3937_RS14985	0.45	+2.7
3,439,391	+		DDA3937_RS14985	0.45	+1.6
3,439,391	+		DDA3937_RS14985	0.45	+0.6
3,439,391	+		DDA3937_RS14985	0.45	+0.8
3,439,392	-		DDA3937_RS14985	0.45	+0.8
3,439,392	-		DDA3937_RS14985	0.45	+1.2
3,439,392	-		DDA3937_RS14985	0.45	-0.0
3,439,410	+		DDA3937_RS14985	0.48	-2.7
3,439,411	-		DDA3937_RS14985	0.48	-1.6
3,439,411	-		DDA3937_RS14985	0.48	-1.8
3,439,467	+		DDA3937_RS14985	0.56	+2.9
3,439,468	-		DDA3937_RS14985	0.56	-2.4
3,439,519	-		DDA3937_RS14985	0.64	+0.7
3,439,519	-		DDA3937_RS14985	0.64	-3.4
3,439,564	+		DDA3937_RS14985	0.70	-1.4
3,439,564	+		DDA3937_RS14985	0.70	+0.6
3,439,564	+		DDA3937_RS14985	0.70	-3.1
3,439,635	-		DDA3937_RS14985	0.80	+0.5
3,439,639	-		DDA3937_RS14985	0.81	-1.5
3,439,653	+		DDA3937_RS14985	0.83	-1.2
3,439,653	+		DDA3937_RS14985	0.83	-3.4
3,439,653	+		DDA3937_RS14985	0.83	-0.3
3,439,766	+				+0.6
3,439,796	+				-0.8
3,439,797	-				-0.2
3,439,797	-				-1.9
3,439,801	-				-3.0
3,439,849	+				-2.4
3,439,849	+				+1.4
3,439,850	-				-0.2
3,439,850	-				+2.2