Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14625

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,347,938	+		DDA3937_RS14620	0.72	+1.5
3,347,938	+		DDA3937_RS14620	0.72	+0.4
3,347,938	+		DDA3937_RS14620	0.72	-0.9
3,347,938	+		DDA3937_RS14620	0.72	-2.2
3,347,939	-		DDA3937_RS14620	0.72	-2.2
3,347,939	-		DDA3937_RS14620	0.72	+1.0
3,347,939	-		DDA3937_RS14620	0.72	-1.5
3,347,984	+		DDA3937_RS14620	0.75	-0.0
3,347,985	-		DDA3937_RS14620	0.75	-0.8
3,347,985	-		DDA3937_RS14620	0.75	-0.3
3,348,121	+		DDA3937_RS14620	0.83	-2.5
3,348,122	-		DDA3937_RS14620	0.84	-1.5
3,348,247	+				+0.6
3,348,247	+				+0.7
3,348,247	+				-2.8
3,348,247	+				+1.9
3,348,248	-				+2.1
3,348,248	-				-3.2
3,348,248	-				+2.5
3,348,339	+				+0.0
3,348,370	-				-0.5
3,348,380	+				+0.4
3,348,384	+				-1.6
3,348,384	+				-1.8
3,348,384	+				+1.8
3,348,384	+				-1.0
3,348,385	-				-2.0
3,348,385	-				-0.8
3,348,385	-				+0.5
3,348,385	-				-2.4
3,348,394	+				-3.3
3,348,394	+				+2.1
3,348,394	+				+0.9
3,348,448	+				-1.1
3,348,448	+				-1.1
3,348,492	+				+0.9
3,348,492	+				-0.8
3,348,493	-				-1.1
3,348,494	+				-2.9
3,348,494	+				+0.1
3,348,494	+				-0.2
3,348,495	-				+0.8
3,348,495	-				+0.5
3,348,531	+				+0.1
3,348,531	+				-0.7
3,348,532	-				-2.6
3,348,532	-				+0.4
3,348,562	+				+1.1
3,348,562	+				+0.7
3,348,563	-				-0.7
3,348,563	-				-0.8
3,348,581	-				-1.6
3,348,581	-				-0.2
3,348,586	+				-2.8
3,348,587	-				+0.4
3,348,587	-				-2.3
3,348,587	-				-0.8
3,348,587	-				-1.3
3,348,587	-				-1.6
3,348,643	+				-1.3
3,348,647	+				-2.6
3,348,647	+				+1.8
3,348,648	-				+0.2
3,348,667	-				+0.4
3,348,671	-				+2.7
3,348,675	-				+1.4
3,348,695	+				-2.8
3,348,695	+				+2.5
3,348,695	+				-1.8
3,348,696	-				+2.1
3,348,696	-				+0.5
3,348,696	-				-2.9
3,348,696	-				+1.1
3,348,696	-				-3.0
3,348,697	+				-1.1
3,348,742	+				+2.3
3,348,796	-				-1.9
3,348,799	+				-0.8
3,348,800	-				-1.2
3,348,800	-				+1.2
3,348,800	-				+0.3
3,348,868	+				-1.9
3,348,868	+				-1.8
3,348,868	+				-2.1
3,348,869	-				-1.7
3,348,869	-				-0.3
3,348,872	+				-1.3
3,348,872	+				-0.9
3,348,873	-				-0.5
3,348,907	+		DDA3937_RS14625	0.14	-1.9
3,348,908	-		DDA3937_RS14625	0.14	-2.6
3,348,908	-		DDA3937_RS14625	0.14	-0.8
3,348,929	-		DDA3937_RS14625	0.17	-1.1
3,349,033	+		DDA3937_RS14625	0.31	-2.4
3,349,034	-		DDA3937_RS14625	0.31	-3.1
3,349,118	-		DDA3937_RS14625	0.42	-0.1
3,349,138	+				-0.1
3,349,139	-		DDA3937_RS14625	0.45	-1.8
3,349,238	+		DDA3937_RS14625	0.58	-0.1
3,349,238	+		DDA3937_RS14625	0.58	-1.9
3,349,238	+		DDA3937_RS14625	0.58	-2.3
3,349,238	+		DDA3937_RS14625	0.58	-2.1
3,349,239	-		DDA3937_RS14625	0.58	-1.6
3,349,239	-		DDA3937_RS14625	0.58	-2.4
3,349,241	+		DDA3937_RS14625	0.58	-1.6
3,349,242	-		DDA3937_RS14625	0.58	-1.5
3,349,297	+		DDA3937_RS14625	0.65	-1.6
3,349,298	-		DDA3937_RS14625	0.66	-2.1
3,349,372	+		DDA3937_RS14625	0.75	-0.8
3,349,372	+		DDA3937_RS14625	0.75	-1.9
3,349,373	-		DDA3937_RS14625	0.75	-0.5
3,349,373	-		DDA3937_RS14625	0.75	+0.5
3,349,373	-		DDA3937_RS14625	0.75	-1.6
3,349,373	-		DDA3937_RS14625	0.75	-1.1
3,349,373	-		DDA3937_RS14625	0.75	-3.1
3,349,373	-		DDA3937_RS14625	0.75	-2.9
3,349,373	-		DDA3937_RS14625	0.75	-1.3
3,349,408	+		DDA3937_RS14625	0.80	-1.6
3,349,408	+		DDA3937_RS14625	0.80	-3.3
3,349,408	+		DDA3937_RS14625	0.80	-1.8
3,349,408	+		DDA3937_RS14625	0.80	-1.6
3,349,409	-		DDA3937_RS14625	0.80	-1.6
3,349,426	+		DDA3937_RS14625	0.82	-3.3
3,349,427	-		DDA3937_RS14625	0.83	-3.4
3,349,442	+		DDA3937_RS14625	0.85	-2.9
3,349,442	+		DDA3937_RS14625	0.85	-2.6
3,349,442	+		DDA3937_RS14625	0.85	-1.6
3,349,497	-				-1.3
3,349,559	+				-2.0
3,349,564	+				-1.4
3,349,564	+				-0.9
3,349,564	+				-2.1
3,349,565	-				-3.8
3,349,565	-				-0.6
3,349,565	-				-2.6
3,349,565	-				-2.4
3,349,565	-				+0.5
3,349,635	+				-2.2
3,349,635	+				-1.1
3,349,636	-				+0.5
3,349,636	-				+0.1
3,349,643	+				-0.9
3,349,643	+				-0.1
3,349,644	-				-2.4
3,349,644	-				-2.6
3,349,644	-				-0.6
3,349,644	-				-0.6
3,349,709	-				+0.9
3,349,861	-				-0.1
3,350,042	-				-3.4
3,350,042	-				-1.2
3,350,070	+		DDA3937_RS14630	0.15	-1.5
3,350,071	-		DDA3937_RS14630	0.16	+0.5
3,350,071	-		DDA3937_RS14630	0.16	-1.5
3,350,080	+		DDA3937_RS14630	0.28	-0.8
3,350,081	-		DDA3937_RS14630	0.29	-1.3
3,350,081	-		DDA3937_RS14630	0.29	-0.3
3,350,081	-		DDA3937_RS14630	0.29	-0.8
3,350,081	-		DDA3937_RS14630	0.29	+0.5
3,350,101	+		DDA3937_RS14630	0.56	-1.1
3,350,102	-		DDA3937_RS14630	0.57	-0.6
3,350,102	-		DDA3937_RS14630	0.57	-0.5
3,350,154	-				-0.5
3,350,166	+				-1.6
3,350,166	+				-1.3
3,350,166	+				-1.9
3,350,166	+				+0.3
3,350,167	-				+0.1
3,350,202	-				-0.2
3,350,202	-				-2.6
3,350,202	-				-0.5
3,350,214	-				+0.3
3,350,241	-				-1.1
3,350,280	+				-0.5
3,350,281	-				-1.3
3,350,292	+				-0.5
3,350,313	+				+1.8
3,350,313	+				+0.6
3,350,313	+				-1.1
3,350,314	-				-0.4
3,350,314	-				-0.2
3,350,315	+				-0.8
3,350,315	+				-2.5
3,350,315	+				-0.1
3,350,315	+				+0.7
3,350,315	+				-0.5
3,350,315	+				-2.9
3,350,316	-				+0.3
3,350,316	-				-0.5
3,350,316	-				-1.9
3,350,316	-				-0.8
3,350,316	-				-0.5
3,350,316	-				-0.6
3,350,316	-				-0.5
3,350,317	+				-0.1
3,350,317	+				+1.5
3,350,317	+				-0.1
3,350,317	+				+1.0
3,350,317	+				-0.6
3,350,317	+				-2.9
3,350,317	+				-2.5
3,350,317	+				-2.1
3,350,317	+				+1.2
3,350,317	+				+1.6
3,350,317	+				-1.6
3,350,317	+				+0.9
3,350,317	+				-0.8
3,350,318	-				-2.9
3,350,318	-				+0.3
3,350,318	-				-1.4
3,350,318	-				-1.1
3,350,318	-				-0.9
3,350,318	-				-0.1
3,350,318	-				-1.3
3,350,324	-				+0.4
3,350,325	+				+1.2
3,350,325	+				-0.1
3,350,325	+				-1.4
3,350,325	+				+2.4
3,350,325	+				-1.9
3,350,326	-				+0.7
3,350,326	-				+1.0
3,350,326	-				+2.0
3,350,351	+				-2.1
3,350,351	+				-1.9
3,350,351	+				+2.4
3,350,351	+				+0.0
3,350,351	+				-2.9
3,350,351	+				-1.6
3,350,351	+				+1.1
3,350,352	-				-0.7
3,350,352	-				+0.4
3,350,352	-				+0.1
3,350,352	-				-0.5
3,350,352	-				+1.2
3,350,352	-				-0.5
3,350,352	-				-2.9
3,350,352	-				+0.5
3,350,390	+				-1.8
3,350,391	-				+0.4
3,350,391	-				-0.1
3,350,391	-				+0.2
3,350,424	+				-0.3
3,350,424	+				+1.8
3,350,424	+				-0.5
3,350,427	+				-1.3
3,350,427	+				-0.8
3,350,427	+				-2.4
3,350,427	+				-1.9
3,350,427	+				+0.5
3,350,428	-				+1.3
3,350,428	-				+0.5
3,350,428	-				+1.3
3,350,428	-				+2.5
3,350,428	-				+1.0
3,350,432	-				+1.4
3,350,432	-				+0.6
3,350,432	-				-2.6
3,350,506	+		DDA3937_RS14635	0.10	-0.3
3,350,538	+		DDA3937_RS14635	0.14	+1.1