Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14345

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,288,977	+				-0.4
3,289,009	+				+1.7
3,289,009	+				-2.5
3,289,053	-				+3.6
3,289,078	-				-2.5
3,289,120	+				-3.2
3,289,148	+				-2.4
3,289,149	-				-1.6
3,289,149	-				+1.1
3,289,178	+				-2.7
3,289,210	+				-1.5
3,289,210	+				-1.5
3,289,211	-				-2.7
3,289,216	+				-3.0
3,289,217	-				+0.0
3,289,217	-				+3.0
3,289,217	-				+1.0
3,289,236	-				+4.7
3,289,254	-				+2.9
3,289,341	-				+2.6
3,289,376	+				-2.4
3,289,377	-				-2.9
3,289,390	+				-2.7
3,289,391	-				+2.7
3,289,391	-				+0.1
3,289,391	-				+1.6
3,289,392	+				+2.6
3,289,392	+				-0.6
3,289,393	-				-1.3
3,289,393	-				+0.2
3,289,393	-				+0.4
3,289,393	-				+2.0
3,289,412	+				+1.9
3,289,413	-				+1.2
3,289,413	-				-0.5
3,289,442	+				+0.8
3,289,443	-				+2.0
3,289,500	-				-3.2
3,289,500	-				-1.5
3,289,500	-				-3.3
3,289,555	+				+0.8
3,289,556	-				+3.0
3,289,556	-				-2.6
3,289,600	+				-2.5
3,289,630	+				-1.8
3,289,661	-				-0.0
3,289,691	-				-1.3
3,289,719	-				+3.5
3,289,719	-				+2.5
3,289,787	-				+2.2
3,289,796	+				+1.4
3,289,796	+				-1.0
3,289,810	+				+1.0
3,289,847	+				+0.8
3,289,869	+				-0.7
3,289,869	+				-1.0
3,289,869	+				-0.5
3,289,869	+				-0.5
3,289,869	+				+0.6
3,289,870	-				-0.3
3,289,870	-				-0.2
3,289,870	-				+1.3
3,289,871	+				+1.4
3,289,871	+				-2.5
3,289,871	+				+1.4
3,289,872	-				-0.1
3,289,872	-				+1.4
3,289,872	-				-1.0
3,289,872	-				-1.6
3,289,874	+				-0.6
3,289,874	+				-3.3
3,289,875	-				+2.3
3,289,875	-				-1.0
3,289,906	+				+0.2
3,289,906	+				+1.5
3,289,906	+				-0.7
3,289,907	-				-2.6
3,289,907	-				-0.5
3,289,907	-				-2.5
3,289,907	-				-2.2
3,289,911	+				-0.5
3,289,911	+				-0.3
3,289,911	+				+0.8
3,289,911	+				-0.0
3,289,911	+				+2.2
3,289,912	-				-2.4
3,289,912	-				-1.3
3,289,912	-				-1.8
3,289,912	-				-1.6
3,289,912	-				-3.7
3,289,912	-				-2.1
3,289,928	+				-0.8
3,289,929	-				+3.7
3,289,929	-				-0.1
3,289,929	-				-0.5
3,289,929	-				-1.8
3,289,952	-				+1.0
3,289,963	+				-0.8
3,290,009	-				-1.0
3,290,009	-				+0.2
3,290,014	-				-1.6
3,290,014	-				-0.9
3,290,031	-				+0.5
3,290,064	+				+0.0
3,290,065	-				+0.7
3,290,065	-				-1.3
3,290,065	-				-3.0
3,290,069	+				+0.9
3,290,070	-				+0.5
3,290,070	-				-3.2
3,290,080	-				-0.6
3,290,168	-		DDA3937_RS14345	0.17	-2.0
3,290,168	-		DDA3937_RS14345	0.17	-2.2
3,290,189	-		DDA3937_RS14345	0.18	+0.1
3,290,210	+		DDA3937_RS14345	0.20	-0.6
3,290,210	+		DDA3937_RS14345	0.20	+1.0
3,290,210	+		DDA3937_RS14345	0.20	+0.1
3,290,211	-		DDA3937_RS14345	0.20	-0.0
3,290,211	-		DDA3937_RS14345	0.20	-1.9
3,290,211	-		DDA3937_RS14345	0.20	-2.9
3,290,219	-		DDA3937_RS14345	0.21	-0.4
3,290,219	-		DDA3937_RS14345	0.21	-3.6
3,290,232	+		DDA3937_RS14345	0.22	+0.7
3,290,260	+		DDA3937_RS14345	0.24	-1.0
3,290,261	-		DDA3937_RS14345	0.24	-2.9
3,290,261	-		DDA3937_RS14345	0.24	+0.3
3,290,261	-		DDA3937_RS14345	0.24	+1.2
3,290,261	-		DDA3937_RS14345	0.24	+2.8
3,290,454	+		DDA3937_RS14345	0.40	-0.3
3,290,499	+		DDA3937_RS14345	0.44	-3.4
3,290,516	+		DDA3937_RS14345	0.45	-0.8
3,290,518	+		DDA3937_RS14345	0.45	-2.0
3,290,518	+		DDA3937_RS14345	0.45	-1.0
3,290,518	+		DDA3937_RS14345	0.45	-0.5
3,290,518	+		DDA3937_RS14345	0.45	-0.5
3,290,518	+		DDA3937_RS14345	0.45	-1.3
3,290,518	+		DDA3937_RS14345	0.45	-1.9
3,290,519	-		DDA3937_RS14345	0.46	-1.6
3,290,519	-		DDA3937_RS14345	0.46	-0.2
3,290,519	-		DDA3937_RS14345	0.46	+0.1
3,290,519	-		DDA3937_RS14345	0.46	-1.6
3,290,565	+		DDA3937_RS14345	0.49	-2.8
3,290,593	+		DDA3937_RS14345	0.52	+1.7
3,290,657	+		DDA3937_RS14345	0.57	-0.5
3,290,884	+		DDA3937_RS14345	0.76	+0.6
3,290,884	+		DDA3937_RS14345	0.76	-2.0
3,290,884	+		DDA3937_RS14345	0.76	+0.7
3,290,885	-		DDA3937_RS14345	0.76	-0.3
3,290,962	+		DDA3937_RS14345	0.82	-2.4
3,290,962	+		DDA3937_RS14345	0.82	+1.4
3,290,962	+		DDA3937_RS14345	0.82	-0.2
3,290,962	+		DDA3937_RS14345	0.82	-1.0
3,290,963	-		DDA3937_RS14345	0.82	-2.6
3,290,963	-		DDA3937_RS14345	0.82	-1.5
3,290,963	-		DDA3937_RS14345	0.82	-0.8
3,290,963	-		DDA3937_RS14345	0.82	-1.9
3,290,963	-		DDA3937_RS14345	0.82	+3.5
3,290,963	-		DDA3937_RS14345	0.82	+1.1
3,290,963	-		DDA3937_RS14345	0.82	-1.2
3,291,307	+				+0.3
3,291,315	+				-3.3
3,291,315	+				-0.8
3,291,315	+				-1.3
3,291,316	-				-1.7
3,291,316	-				-2.1
3,291,331	+				+2.7
3,291,331	+				-1.1
3,291,331	+				-1.3
3,291,332	-				-0.5
3,291,332	-				+0.5
3,291,332	-				-2.2
3,291,332	-				+1.1
3,291,530	+		DDA3937_RS14350	0.33	+1.4
3,291,530	+		DDA3937_RS14350	0.33	-0.1
3,291,530	+		DDA3937_RS14350	0.33	-0.5
3,291,531	-		DDA3937_RS14350	0.33	-1.3
3,291,531	-		DDA3937_RS14350	0.33	-0.5
3,291,531	-		DDA3937_RS14350	0.33	-1.6
3,291,531	-		DDA3937_RS14350	0.33	-0.8
3,291,531	-		DDA3937_RS14350	0.33	+1.0
3,291,581	+		DDA3937_RS14350	0.41	-1.6
3,291,581	+		DDA3937_RS14350	0.41	-1.6
3,291,581	+		DDA3937_RS14350	0.41	-0.9
3,291,581	+		DDA3937_RS14350	0.41	+1.1
3,291,582	-		DDA3937_RS14350	0.42	+2.2
3,291,582	-		DDA3937_RS14350	0.42	-0.3
3,291,584	+		DDA3937_RS14350	0.42	-1.6
3,291,584	+		DDA3937_RS14350	0.42	+0.2
3,291,584	+		DDA3937_RS14350	0.42	-1.5
3,291,585	-		DDA3937_RS14350	0.42	-0.7
3,291,637	+		DDA3937_RS14350	0.51	-1.9
3,291,638	-		DDA3937_RS14350	0.51	-1.5
3,291,654	+		DDA3937_RS14350	0.54	-0.2
3,291,655	-		DDA3937_RS14350	0.54	+0.0
3,291,756	-		DDA3937_RS14350	0.71	+0.7
3,291,861	-		DDA3937_RS14350	0.88	-0.9
3,291,878	-				-1.3
3,291,878	-				-1.9
3,291,930	-				+1.0
3,292,121	+				+1.0
3,292,122	-				-1.4