Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14255

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,263,596	-				-0.2
3,263,657	+		DDA3937_RS14250	0.12	+0.2
3,263,657	+		DDA3937_RS14250	0.12	+4.5
3,263,658	-		DDA3937_RS14250	0.12	+2.4
3,263,658	-		DDA3937_RS14250	0.12	-0.5
3,263,658	-		DDA3937_RS14250	0.12	-1.9
3,263,658	-		DDA3937_RS14250	0.12	-2.8
3,263,658	-		DDA3937_RS14250	0.12	-0.8
3,263,658	-		DDA3937_RS14250	0.12	-0.5
3,263,786	+		DDA3937_RS14250	0.25	-1.3
3,263,786	+		DDA3937_RS14250	0.25	+0.3
3,263,787	-		DDA3937_RS14250	0.25	-3.6
3,263,787	-		DDA3937_RS14250	0.25	-1.2
3,263,787	-		DDA3937_RS14250	0.25	-3.0
3,263,792	+		DDA3937_RS14250	0.25	-2.0
3,263,792	+		DDA3937_RS14250	0.25	+2.3
3,263,792	+		DDA3937_RS14250	0.25	-1.3
3,263,793	-		DDA3937_RS14250	0.25	-0.9
3,263,793	-		DDA3937_RS14250	0.25	-1.8
3,263,793	-		DDA3937_RS14250	0.25	-1.0
3,263,793	-		DDA3937_RS14250	0.25	+1.6
3,263,793	-		DDA3937_RS14250	0.25	-0.5
3,263,793	-		DDA3937_RS14250	0.25	+1.1
3,263,793	-		DDA3937_RS14250	0.25	+2.2
3,263,801	+		DDA3937_RS14250	0.26	-0.3
3,263,801	+		DDA3937_RS14250	0.26	-1.3
3,263,801	+		DDA3937_RS14250	0.26	-0.6
3,263,802	-		DDA3937_RS14250	0.26	+2.6
3,263,802	-		DDA3937_RS14250	0.26	+1.3
3,263,802	-		DDA3937_RS14250	0.26	-0.8
3,263,822	+		DDA3937_RS14250	0.28	+1.0
3,263,822	+		DDA3937_RS14250	0.28	-3.9
3,263,822	+		DDA3937_RS14250	0.28	-1.0
3,263,823	-				-0.5
3,263,823	-		DDA3937_RS14250	0.28	+0.7
3,263,861	+		DDA3937_RS14250	0.32	-1.3
3,263,861	+		DDA3937_RS14250	0.32	-0.5
3,263,862	-		DDA3937_RS14250	0.32	+1.8
3,263,928	-		DDA3937_RS14250	0.39	+0.7
3,264,007	-		DDA3937_RS14250	0.46	+2.8
3,264,047	+		DDA3937_RS14250	0.50	-1.8
3,264,053	+		DDA3937_RS14250	0.51	-1.6
3,264,054	-		DDA3937_RS14250	0.51	-1.4
3,264,054	-		DDA3937_RS14250	0.51	+0.0
3,264,119	+		DDA3937_RS14250	0.57	+1.1
3,264,218	+		DDA3937_RS14250	0.67	-2.0
3,264,219	-		DDA3937_RS14250	0.67	-1.8
3,264,219	-		DDA3937_RS14250	0.67	+1.7
3,264,219	-		DDA3937_RS14250	0.67	-1.8
3,264,219	-		DDA3937_RS14250	0.67	-3.3
3,264,219	-		DDA3937_RS14250	0.67	-1.9
3,264,224	+		DDA3937_RS14250	0.68	-0.6
3,264,293	+		DDA3937_RS14250	0.74	+0.8
3,264,294	-		DDA3937_RS14250	0.75	-1.0
3,264,363	-		DDA3937_RS14250	0.81	-2.5
3,264,363	-		DDA3937_RS14250	0.81	-0.8
3,264,372	+		DDA3937_RS14250	0.82	-1.6
3,264,372	+		DDA3937_RS14250	0.82	-1.8
3,264,372	+		DDA3937_RS14250	0.82	-1.8
3,264,373	-		DDA3937_RS14250	0.82	+0.7
3,264,432	-		DDA3937_RS14250	0.88	+1.3
3,264,499	-				-2.3
3,264,558	-				-0.8
3,264,558	-				-0.9
3,264,754	+		DDA3937_RS14255	0.18	-0.8
3,264,803	+		DDA3937_RS14255	0.22	-3.5
3,264,803	+		DDA3937_RS14255	0.22	+0.4
3,264,834	+		DDA3937_RS14255	0.25	-1.8
3,264,834	+		DDA3937_RS14255	0.25	+2.8
3,264,834	+		DDA3937_RS14255	0.25	-3.6
3,264,834	+		DDA3937_RS14255	0.25	+2.8
3,264,834	+		DDA3937_RS14255	0.25	+1.5
3,264,835	-		DDA3937_RS14255	0.25	-2.2
3,264,909	-		DDA3937_RS14255	0.31	+2.6
3,264,909	-		DDA3937_RS14255	0.31	+1.1
3,265,013	+		DDA3937_RS14255	0.41	-2.6
3,265,061	+		DDA3937_RS14255	0.45	+1.7
3,265,061	+		DDA3937_RS14255	0.45	-1.2
3,265,061	+		DDA3937_RS14255	0.45	+0.7
3,265,061	+		DDA3937_RS14255	0.45	-1.8
3,265,062	-		DDA3937_RS14255	0.45	-1.6
3,265,122	+		DDA3937_RS14255	0.50	-1.0
3,265,122	+		DDA3937_RS14255	0.50	+0.1
3,265,122	+		DDA3937_RS14255	0.50	+2.4
3,265,123	-		DDA3937_RS14255	0.50	-1.5
3,265,299	-		DDA3937_RS14255	0.66	+1.4
3,265,334	-		DDA3937_RS14255	0.69	+0.8
3,265,334	-		DDA3937_RS14255	0.69	-1.0
3,265,342	+		DDA3937_RS14255	0.70	-0.0
3,265,343	-		DDA3937_RS14255	0.70	-1.8
3,265,343	-		DDA3937_RS14255	0.70	-2.7
3,265,346	+		DDA3937_RS14255	0.70	-0.1
3,265,346	+		DDA3937_RS14255	0.70	-1.6
3,265,346	+		DDA3937_RS14255	0.70	-0.0
3,265,347	-		DDA3937_RS14255	0.70	+1.5
3,265,347	-		DDA3937_RS14255	0.70	-0.7
3,265,347	-		DDA3937_RS14255	0.70	+0.4
3,265,347	-		DDA3937_RS14255	0.70	-1.5
3,265,359	-		DDA3937_RS14255	0.71	+0.9
3,265,359	-		DDA3937_RS14255	0.71	-1.0
3,265,428	-		DDA3937_RS14255	0.77	-0.2
3,265,428	-		DDA3937_RS14255	0.77	-0.7
3,265,440	+		DDA3937_RS14255	0.78	-1.5
3,265,441	-		DDA3937_RS14255	0.78	+1.1
3,265,441	-		DDA3937_RS14255	0.78	-1.5
3,265,443	+		DDA3937_RS14255	0.79	-0.9
3,265,443	+		DDA3937_RS14255	0.79	+1.2
3,265,444	-		DDA3937_RS14255	0.79	-1.2
3,265,444	-		DDA3937_RS14255	0.79	-2.3
3,265,444	-		DDA3937_RS14255	0.79	+0.4
3,265,506	+		DDA3937_RS14255	0.84	+1.4
3,265,506	+		DDA3937_RS14255	0.84	-3.5
3,265,507	-		DDA3937_RS14255	0.84	+0.5
3,265,622	-				-2.8
3,265,622	-				-2.4
3,265,622	-				+0.2
3,265,630	-				-2.2
3,265,668	+				+0.5
3,265,668	+				-2.8
3,265,669	-				-0.4
3,265,691	+				+1.4
3,265,701	+				+0.4
3,265,724	+				-0.2
3,265,724	+				-1.0
3,265,725	-				+0.6
3,265,736	+				-2.4
3,265,775	-				-1.3
3,265,955	+				-2.9
3,266,071	-				+0.5
3,266,134	-				-2.5
3,266,170	-				-0.9
3,266,170	-				-0.5
3,266,261	-				-1.8
3,266,301	+				-2.0
3,266,356	+				-2.3
3,266,356	+				-1.6
3,266,357	-				+0.9
3,266,518	+		DDA3937_RS14260	0.15	+3.4
3,266,519	-		DDA3937_RS14260	0.15	-1.9
3,266,519	-		DDA3937_RS14260	0.15	+1.0
3,266,555	+		DDA3937_RS14260	0.18	+2.4
3,266,555	+		DDA3937_RS14260	0.18	-1.0
3,266,555	+		DDA3937_RS14260	0.18	-1.6
3,266,555	+		DDA3937_RS14260	0.18	+1.0
3,266,555	+		DDA3937_RS14260	0.18	-2.7
3,266,556	-		DDA3937_RS14260	0.18	-0.0
3,266,556	-		DDA3937_RS14260	0.18	-2.0