Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14145

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,237,680	+		DDA3937_RS14140	0.67	-0.4
3,237,701	+		DDA3937_RS14140	0.70	-3.0
3,237,745	-		DDA3937_RS14140	0.74	+1.3
3,237,758	+		DDA3937_RS14140	0.75	-2.0
3,237,758	+		DDA3937_RS14140	0.75	-1.5
3,237,758	+		DDA3937_RS14140	0.75	-0.7
3,237,759	-		DDA3937_RS14140	0.75	-2.2
3,237,759	-		DDA3937_RS14140	0.75	-1.5
3,237,767	+		DDA3937_RS14140	0.76	-1.8
3,237,768	-		DDA3937_RS14140	0.76	-2.5
3,237,800	+		DDA3937_RS14140	0.80	-2.4
3,237,816	+		DDA3937_RS14140	0.81	-2.3
3,237,862	+		DDA3937_RS14140	0.86	+0.5
3,237,891	-		DDA3937_RS14140	0.89	+0.1
3,237,960	+				-0.9
3,237,960	+				-2.8
3,237,963	-				+2.9
3,238,124	-				-1.3
3,238,124	-				-1.0
3,238,163	+				+0.1
3,238,204	-				-2.0
3,238,241	+				-1.3
3,238,371	-				+0.7
3,238,412	+				-1.3
3,238,427	-				-2.0
3,238,469	+				-1.0
3,238,554	+				-3.0
3,238,555	-				-1.6
3,238,555	-				-0.5
3,238,565	+				-0.0
3,238,566	-				-1.6
3,238,601	+				-1.3
3,238,601	+				-1.6
3,238,794	+		DDA3937_RS14145	0.14	-0.1
3,238,795	-		DDA3937_RS14145	0.14	+1.1
3,238,795	-		DDA3937_RS14145	0.14	+0.4
3,238,795	-		DDA3937_RS14145	0.14	+0.5
3,238,795	-		DDA3937_RS14145	0.14	+1.9
3,238,809	+		DDA3937_RS14145	0.16	+1.1
3,238,809	+		DDA3937_RS14145	0.16	-1.8
3,238,809	+		DDA3937_RS14145	0.16	+1.3
3,238,810	-		DDA3937_RS14145	0.16	-1.3
3,238,872	+				-0.8
3,238,901	-		DDA3937_RS14145	0.25	+0.6
3,238,901	-		DDA3937_RS14145	0.25	-0.2
3,238,901	-		DDA3937_RS14145	0.25	+1.9
3,238,921	+				+0.5
3,238,921	+		DDA3937_RS14145	0.27	-2.9
3,238,921	+		DDA3937_RS14145	0.27	+0.8
3,238,921	+		DDA3937_RS14145	0.27	+2.4
3,238,922	-		DDA3937_RS14145	0.27	-1.9
3,238,922	-		DDA3937_RS14145	0.27	-1.3
3,238,922	-		DDA3937_RS14145	0.27	+0.6
3,238,922	-		DDA3937_RS14145	0.27	-1.5
3,238,945	+		DDA3937_RS14145	0.30	+2.1
3,238,946	-		DDA3937_RS14145	0.30	-1.5
3,238,946	-		DDA3937_RS14145	0.30	-2.8
3,238,988	+		DDA3937_RS14145	0.34	+1.3
3,238,988	+		DDA3937_RS14145	0.34	+0.4
3,238,989	-		DDA3937_RS14145	0.34	+2.3
3,239,006	-		DDA3937_RS14145	0.36	+2.9
3,239,006	-		DDA3937_RS14145	0.36	+2.2
3,239,091	+		DDA3937_RS14145	0.45	+2.5
3,239,091	+		DDA3937_RS14145	0.45	+1.2
3,239,091	+		DDA3937_RS14145	0.45	+0.5
3,239,092	-		DDA3937_RS14145	0.45	+1.2
3,239,092	-		DDA3937_RS14145	0.45	+1.9
3,239,225	+		DDA3937_RS14145	0.59	-1.0
3,239,225	+		DDA3937_RS14145	0.59	-1.0
3,239,354	-		DDA3937_RS14145	0.73	+0.4
3,239,354	-		DDA3937_RS14145	0.73	-1.9
3,239,354	-		DDA3937_RS14145	0.73	+2.5
3,239,512	-		DDA3937_RS14145	0.89	-0.2
3,239,512	-		DDA3937_RS14145	0.89	-2.9
3,239,512	-		DDA3937_RS14145	0.89	+2.8
3,239,603	-				+0.1
3,239,603	-				+1.4
3,239,608	+				+2.4
3,239,692	+				+1.8
3,239,693	-				+0.5
3,239,693	-				+0.3
3,239,713	-				+0.6
3,239,713	-				+1.1
3,239,713	-				-1.0
3,239,713	-				-3.1
3,239,829	+				-0.5
3,239,829	+				-1.3
3,239,837	+				-2.9
3,239,837	+				+1.2
3,239,840	+				+0.7
3,239,840	+				-0.6
3,239,841	-				+1.1
3,239,841	-				-1.6
3,239,841	-				-0.8
3,239,942	+				+0.5
3,239,942	+				-0.3
3,239,942	+				-1.9
3,239,943	-				-3.0
3,239,943	-				-2.5
3,239,943	-				-0.0
3,239,943	-				+1.5
3,239,943	-				-2.2
3,239,946	+				-0.9
3,239,946	+				-0.3
3,239,946	+				+1.0
3,239,946	+				+0.5
3,239,946	+				-2.2
3,239,946	+				+0.5
3,239,946	+				+0.9
3,239,946	+				+1.5
3,239,946	+				-1.0
3,239,946	+				-1.4
3,239,947	-				-1.0
3,239,947	-				-2.8
3,239,947	-				-2.0
3,239,947	-				+0.8
3,239,947	-				-3.2
3,239,947	-				+0.0
3,239,947	-				+1.1
3,239,964	+				+0.1
3,239,964	+				+1.1
3,239,964	+				-1.0
3,239,964	+				-0.8
3,239,965	-				-3.8
3,239,981	+				-0.3
3,239,981	+				+0.5
3,239,981	+				-0.2
3,239,981	+				-1.8
3,239,981	+				-1.2
3,239,981	+				-2.5
3,239,981	+				-0.4
3,239,981	+				-3.9
3,239,981	+				-0.0
3,239,981	+				-1.8
3,239,981	+				-1.8
3,239,981	+				-3.0
3,239,982	-				-1.0
3,239,982	-				+1.5
3,239,982	-				-2.0
3,239,982	-				-0.8
3,239,982	-				-1.0
3,239,982	-				-0.5
3,239,982	-				-2.2
3,239,982	-				+0.8
3,239,982	-				+1.5
3,239,997	-				-1.1
3,240,080	+				-0.1
3,240,080	+				-1.6
3,240,081	-				-1.3
3,240,081	-				-2.5
3,240,081	-				+0.7
3,240,092	+				-1.9
3,240,198	-		DDA3937_RS14150	0.16	-1.3
3,240,199	+		DDA3937_RS14150	0.16	+1.6
3,240,199	+		DDA3937_RS14150	0.16	+1.3
3,240,199	+		DDA3937_RS14150	0.16	-0.2
3,240,329	+		DDA3937_RS14150	0.26	-0.5
3,240,329	+		DDA3937_RS14150	0.26	-0.0
3,240,329	+		DDA3937_RS14150	0.26	-0.6
3,240,329	+		DDA3937_RS14150	0.26	+0.2
3,240,329	+		DDA3937_RS14150	0.26	-2.5
3,240,330	-		DDA3937_RS14150	0.27	+0.5
3,240,330	-		DDA3937_RS14150	0.27	-0.2
3,240,333	+		DDA3937_RS14150	0.27	-2.2
3,240,333	+		DDA3937_RS14150	0.27	+4.1
3,240,333	+		DDA3937_RS14150	0.27	-2.3
3,240,334	-		DDA3937_RS14150	0.27	-0.5
3,240,334	-		DDA3937_RS14150	0.27	-2.4
3,240,334	-		DDA3937_RS14150	0.27	-0.5
3,240,386	+		DDA3937_RS14150	0.31	-1.0
3,240,386	+		DDA3937_RS14150	0.31	-1.0
3,240,386	+		DDA3937_RS14150	0.31	+1.5
3,240,386	+		DDA3937_RS14150	0.31	+1.9
3,240,387	-		DDA3937_RS14150	0.31	-0.5
3,240,570	+		DDA3937_RS14150	0.45	-1.5
3,240,583	-		DDA3937_RS14150	0.46	+0.5