Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14080

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,215,252	+		DDA3937_RS23275	0.58	-2.8
3,215,252	+		DDA3937_RS23275	0.58	-2.3
3,215,253	-		DDA3937_RS23275	0.58	+1.1
3,215,253	-		DDA3937_RS23275	0.58	-2.7
3,215,253	-		DDA3937_RS23275	0.58	+1.5
3,215,255	+		DDA3937_RS23275	0.59	+0.2
3,215,255	+		DDA3937_RS23275	0.59	-1.5
3,215,255	+		DDA3937_RS23275	0.59	-3.9
3,215,255	+		DDA3937_RS23275	0.59	-1.3
3,215,255	+		DDA3937_RS23275	0.59	+0.2
3,215,256	-		DDA3937_RS23275	0.59	-0.5
3,215,256	-		DDA3937_RS23275	0.59	-0.2
3,215,256	-		DDA3937_RS23275	0.59	-0.0
3,215,256	-		DDA3937_RS23275	0.59	+2.5
3,215,256	-		DDA3937_RS23275	0.59	-1.9
3,215,256	-		DDA3937_RS23275	0.59	+1.0
3,215,256	-		DDA3937_RS23275	0.59	-0.6
3,215,259	+		DDA3937_RS23275	0.60	-2.2
3,215,259	+		DDA3937_RS23275	0.60	-2.0
3,215,260	-		DDA3937_RS23275	0.61	+0.3
3,215,260	-		DDA3937_RS23275	0.61	+0.7
3,215,298	-		DDA3937_RS23275	0.75	-3.1
3,215,347	-				+0.1
3,215,370	+				+1.0
3,215,371	-				-1.3
3,215,371	-				+2.9
3,215,371	-				+1.1
3,215,371	-				-2.4
3,215,373	-				+1.5
3,215,378	+				-0.7
3,215,399	+				-1.4
3,215,399	+				-1.9
3,215,399	+				-2.1
3,215,399	+				-0.3
3,215,400	-				-1.3
3,215,408	+				+1.0
3,215,408	+				-3.5
3,215,408	+				-2.1
3,215,423	-				-3.6
3,215,448	-				-1.6
3,215,448	-				+0.1
3,215,451	+				+2.6
3,215,451	+				-1.3
3,215,452	-				-2.3
3,215,518	+				+0.8
3,215,518	+				-0.1
3,215,519	-				-0.4
3,215,523	+				+0.8
3,215,523	+				-1.3
3,215,523	+				-0.1
3,215,523	+				-0.3
3,215,523	+				-0.8
3,215,523	+				-3.0
3,215,524	-				-1.3
3,215,524	-				-1.0
3,215,524	-				-1.4
3,215,524	-				+1.1
3,215,524	-				-0.0
3,215,524	-				-2.7
3,215,524	-				-1.6
3,215,524	-				-1.3
3,215,590	-				+2.0
3,215,625	-				+0.5
3,215,627	+				+1.6
3,215,627	+				-2.7
3,215,628	-				-2.0
3,215,628	-				-1.0
3,215,628	-				-1.3
3,215,628	-				-0.4
3,215,628	-				+1.1
3,215,631	+				-2.4
3,215,632	-				+0.4
3,215,738	+		DDA3937_RS14075	0.24	+1.4
3,215,738	+		DDA3937_RS14075	0.24	+1.0
3,215,739	-		DDA3937_RS14075	0.24	+0.3
3,215,739	-		DDA3937_RS14075	0.24	-2.1
3,215,746	+		DDA3937_RS14075	0.25	-2.6
3,215,746	+		DDA3937_RS14075	0.25	-1.9
3,215,746	+		DDA3937_RS14075	0.25	+1.4
3,215,747	-		DDA3937_RS14075	0.25	-1.7
3,215,747	-		DDA3937_RS14075	0.25	-1.9
3,215,747	-		DDA3937_RS14075	0.25	-2.5
3,215,780	+		DDA3937_RS14075	0.32	-1.4
3,215,780	+		DDA3937_RS14075	0.32	-1.3
3,215,780	+		DDA3937_RS14075	0.32	-1.6
3,215,780	+		DDA3937_RS14075	0.32	-2.3
3,215,780	+		DDA3937_RS14075	0.32	-1.6
3,215,780	+		DDA3937_RS14075	0.32	+0.2
3,215,781	-		DDA3937_RS14075	0.32	-2.4
3,215,781	-		DDA3937_RS14075	0.32	-1.1
3,215,787	+		DDA3937_RS14075	0.33	-1.8
3,215,787	+		DDA3937_RS14075	0.33	+1.7
3,215,788	-		DDA3937_RS14075	0.33	+0.6
3,215,839	+		DDA3937_RS14075	0.42	+1.6
3,215,845	+		DDA3937_RS14075	0.43	-2.4
3,215,845	+		DDA3937_RS14075	0.43	+3.1
3,215,845	+		DDA3937_RS14075	0.43	-1.0
3,215,845	+		DDA3937_RS14075	0.43	+1.6
3,215,846	-		DDA3937_RS14075	0.44	+2.2
3,215,974	+		DDA3937_RS14075	0.67	+0.7
3,215,998	+		DDA3937_RS14075	0.71	-0.0
3,215,998	+		DDA3937_RS14075	0.71	+1.0
3,215,999	-		DDA3937_RS14075	0.72	-1.0
3,216,007	-		DDA3937_RS14075	0.73	+0.2
3,216,077	+		DDA3937_RS14075	0.86	-2.0
3,216,078	-		DDA3937_RS14075	0.86	+1.6
3,216,078	-		DDA3937_RS14075	0.86	+1.6
3,216,078	-		DDA3937_RS14075	0.86	-2.0
3,216,152	-				-0.4
3,216,157	-				-0.1
3,216,470	+		DDA3937_RS14080	0.33	+0.7
3,216,470	+		DDA3937_RS14080	0.33	-1.6
3,216,470	+		DDA3937_RS14080	0.33	+1.8
3,216,471	-		DDA3937_RS14080	0.33	+1.7
3,216,471	-		DDA3937_RS14080	0.33	+1.7
3,216,471	-		DDA3937_RS14080	0.33	+1.5
3,216,471	-		DDA3937_RS14080	0.33	+0.5
3,216,471	-		DDA3937_RS14080	0.33	+0.9
3,216,471	-		DDA3937_RS14080	0.33	+0.8
3,216,471	-		DDA3937_RS14080	0.33	+0.7
3,216,717	+		DDA3937_RS14080	0.62	-2.0
3,216,717	+		DDA3937_RS14080	0.62	-0.5
3,216,918	+		DDA3937_RS14080	0.87	-1.9
3,216,919	-		DDA3937_RS14080	0.87	+1.0
3,217,011	+				+0.2
3,217,011	+				-1.8
3,217,011	+				+0.7
3,217,011	+				+1.3
3,217,011	+				-1.6
3,217,011	+				-2.5
3,217,011	+				+0.0
3,217,011	+				-0.5
3,217,012	-				-2.0
3,217,020	+				+1.1
3,217,020	+				+1.8
3,217,020	+				-1.8
3,217,021	-				-2.5
3,217,035	+				+2.9
3,217,073	-				-2.7
3,217,073	-				-1.3
3,217,091	+				-1.8
3,217,091	+				-1.3
3,217,091	+				+1.4
3,217,091	+				-1.8
3,217,092	-				-1.3
3,217,092	-				+0.2
3,217,092	-				+0.3
3,217,092	-				+0.5
3,217,150	+				-2.8
3,217,151	-				-1.1
3,217,151	-				+0.3
3,217,151	-				-1.8
3,217,151	-				-1.8
3,217,151	-				+0.5
3,217,151	-				-0.5
3,217,151	-				+0.7
3,217,376	+		DDA3937_RS14085	0.12	+1.5
3,217,376	+		DDA3937_RS14085	0.12	+1.3
3,217,376	+		DDA3937_RS14085	0.12	-0.3
3,217,376	+		DDA3937_RS14085	0.12	-2.8
3,217,377	-		DDA3937_RS14085	0.12	+0.8
3,217,377	-		DDA3937_RS14085	0.12	-3.7
3,217,377	-		DDA3937_RS14085	0.12	-2.2
3,217,377	-		DDA3937_RS14085	0.12	-0.9
3,217,452	-		DDA3937_RS14085	0.15	-1.5
3,217,478	+		DDA3937_RS14085	0.16	+1.0
3,217,683	-		DDA3937_RS14085	0.24	+1.4
3,217,764	+		DDA3937_RS14085	0.27	-0.6
3,217,764	+		DDA3937_RS14085	0.27	-0.6
3,217,764	+		DDA3937_RS14085	0.27	+2.6
3,217,764	+		DDA3937_RS14085	0.27	-1.6
3,217,764	+		DDA3937_RS14085	0.27	+0.6
3,217,765	-		DDA3937_RS14085	0.27	+2.1
3,217,765	-		DDA3937_RS14085	0.27	-2.2
3,217,893	-				+1.8