Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13995

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,195,173	+				+1.7
3,195,174	-				+1.0
3,195,310	+				+2.6
3,195,315	+				+1.0
3,195,318	-				-1.1
3,195,354	-				+0.6
3,195,371	-				-3.4
3,195,426	+		DDA3937_RS22370	0.11	+0.7
3,195,426	+		DDA3937_RS22370	0.11	+2.3
3,195,446	-		DDA3937_RS22370	0.15	-0.8
3,195,446	-		DDA3937_RS22370	0.15	-1.6
3,195,448	-		DDA3937_RS22370	0.15	+0.9
3,195,494	+		DDA3937_RS22370	0.22	-1.3
3,195,495	-		DDA3937_RS22370	0.22	-0.8
3,195,498	-				+0.6
3,195,505	-		DDA3937_RS22370	0.24	-0.5
3,195,588	+		DDA3937_RS22370	0.36	+2.3
3,195,589	-		DDA3937_RS22370	0.37	+1.8
3,195,705	+		DDA3937_RS22370	0.54	-1.0
3,195,706	-		DDA3937_RS22370	0.55	-2.1
3,195,708	+		DDA3937_RS22370	0.55	-2.0
3,195,708	+		DDA3937_RS22370	0.55	-2.3
3,195,709	-		DDA3937_RS22370	0.55	-1.4
3,195,743	+		DDA3937_RS22370	0.60	-1.3
3,195,743	+		DDA3937_RS22370	0.60	+0.3
3,195,743	+		DDA3937_RS22370	0.60	-0.8
3,195,743	+		DDA3937_RS22370	0.60	+3.1
3,195,743	+		DDA3937_RS22370	0.60	-1.6
3,195,744	-		DDA3937_RS22370	0.60	+0.2
3,195,744	-		DDA3937_RS22370	0.60	-2.9
3,195,744	-		DDA3937_RS22370	0.60	-2.4
3,195,744	-		DDA3937_RS22370	0.60	-1.0
3,195,744	-		DDA3937_RS22370	0.60	-1.6
3,195,744	-		DDA3937_RS22370	0.60	-1.3
3,195,744	-		DDA3937_RS22370	0.60	-2.5
3,195,756	+		DDA3937_RS22370	0.62	+0.5
3,195,764	+		DDA3937_RS22370	0.64	-2.0
3,195,838	-		DDA3937_RS22370	0.75	-1.8
3,195,839	+		DDA3937_RS22370	0.75	-1.6
3,195,840	-		DDA3937_RS22370	0.75	+1.4
3,195,840	-		DDA3937_RS22370	0.75	-2.3
3,195,840	-		DDA3937_RS22370	0.75	-1.1
3,195,856	-		DDA3937_RS22370	0.78	+0.2
3,195,973	+				+3.4
3,196,002	+				-1.3
3,196,003	-				-0.2
3,196,003	-				-1.0
3,196,003	-				-0.7
3,196,048	+				-0.8
3,196,048	+				+0.0
3,196,049	-				+0.3
3,196,218	+		DDA3937_RS13995	0.20	-3.4
3,196,219	-		DDA3937_RS13995	0.20	-1.3
3,196,233	-		DDA3937_RS13995	0.21	-1.3
3,196,237	+		DDA3937_RS13995	0.22	-2.0
3,196,238	-		DDA3937_RS13995	0.22	-1.0
3,196,373	-		DDA3937_RS13995	0.34	-1.6
3,196,435	-		DDA3937_RS13995	0.39	-1.6
3,196,602	+		DDA3937_RS13995	0.54	-0.1
3,196,603	-		DDA3937_RS13995	0.55	+1.4
3,196,670	-		DDA3937_RS13995	0.61	-1.5
3,196,671	+		DDA3937_RS13995	0.61	-2.4
3,196,671	+		DDA3937_RS13995	0.61	+1.8
3,196,672	-		DDA3937_RS13995	0.61	+2.4
3,196,672	-		DDA3937_RS13995	0.61	+0.5
3,196,672	-		DDA3937_RS13995	0.61	-1.0
3,196,710	-		DDA3937_RS13995	0.64	-2.9
3,196,715	+		DDA3937_RS13995	0.65	-1.3
3,196,745	+		DDA3937_RS13995	0.67	+1.6
3,196,745	+		DDA3937_RS13995	0.67	-4.2
3,196,746	-		DDA3937_RS13995	0.67	-1.7
3,196,802	+		DDA3937_RS13995	0.72	+0.1
3,196,803	-		DDA3937_RS13995	0.73	-2.3
3,196,805	+		DDA3937_RS13995	0.73	+0.2
3,196,805	+		DDA3937_RS13995	0.73	-1.8
3,196,805	+		DDA3937_RS13995	0.73	-1.5
3,196,805	+		DDA3937_RS13995	0.73	-1.5
3,196,805	+		DDA3937_RS13995	0.73	-2.9
3,196,805	+		DDA3937_RS13995	0.73	-1.8
3,196,806	-		DDA3937_RS13995	0.73	-1.9
3,196,806	-		DDA3937_RS13995	0.73	-1.3
3,196,829	+		DDA3937_RS13995	0.75	-1.5
3,196,832	+		DDA3937_RS13995	0.75	+1.7
3,196,833	-		DDA3937_RS13995	0.75	+1.7
3,196,868	+		DDA3937_RS13995	0.78	-2.4
3,196,868	+		DDA3937_RS13995	0.78	+0.8
3,196,878	-		DDA3937_RS13995	0.79	-0.0
3,196,906	-		DDA3937_RS13995	0.82	+1.0
3,196,916	-		DDA3937_RS13995	0.83	-0.2
3,196,916	-		DDA3937_RS13995	0.83	-3.3
3,196,916	-		DDA3937_RS13995	0.83	-3.1
3,196,916	-		DDA3937_RS13995	0.83	+1.0
3,196,917	+		DDA3937_RS13995	0.83	-1.0
3,196,917	+		DDA3937_RS13995	0.83	-2.4
3,196,945	+		DDA3937_RS13995	0.85	-3.5
3,196,945	+		DDA3937_RS13995	0.85	-2.8
3,196,945	+		DDA3937_RS13995	0.85	-2.2
3,196,946	-		DDA3937_RS13995	0.85	-0.5
3,196,946	-		DDA3937_RS13995	0.85	-1.9
3,196,964	+		DDA3937_RS13995	0.87	-0.3
3,196,965	-		DDA3937_RS13995	0.87	-1.0
3,197,073	-				-0.1
3,197,108	+				-1.5
3,197,109	-				-0.0
3,197,109	-				+0.7
3,197,189	+				-0.8
3,197,189	+				-1.0
3,197,189	+				-1.8
3,197,190	-				+1.0
3,197,190	-				-0.5
3,197,191	+				-0.0
3,197,191	+				-2.5
3,197,191	+				-0.9
3,197,191	+				-0.8
3,197,191	+				-0.6
3,197,191	+				-1.0
3,197,191	+				-1.3
3,197,191	+				+1.7
3,197,192	-				-0.5
3,197,289	+		DDA3937_RS14000	0.13	-2.5
3,197,339	+		DDA3937_RS14000	0.17	-0.8
3,197,339	+		DDA3937_RS14000	0.17	-2.5
3,197,340	-		DDA3937_RS14000	0.17	+0.2
3,197,343	-		DDA3937_RS14000	0.17	-2.4
3,197,368	+		DDA3937_RS14000	0.19	-3.5
3,197,369	-		DDA3937_RS14000	0.19	-1.0
3,197,369	-		DDA3937_RS14000	0.19	-0.5
3,197,369	-		DDA3937_RS14000	0.19	-1.8
3,197,453	+		DDA3937_RS14000	0.25	-0.7
3,197,454	-		DDA3937_RS14000	0.25	-3.3
3,197,454	-		DDA3937_RS14000	0.25	-1.0
3,197,454	-		DDA3937_RS14000	0.25	+2.2
3,197,454	-		DDA3937_RS14000	0.25	-1.5
3,197,454	-		DDA3937_RS14000	0.25	-2.7
3,197,457	+		DDA3937_RS14000	0.26	+2.1
3,197,466	+		DDA3937_RS14000	0.26	-2.0
3,197,466	+		DDA3937_RS14000	0.26	-1.5
3,197,467	-		DDA3937_RS14000	0.26	-1.0
3,197,467	-		DDA3937_RS14000	0.26	-2.7
3,197,467	-		DDA3937_RS14000	0.26	-2.2
3,197,476	+		DDA3937_RS14000	0.27	-1.7
3,197,477	-		DDA3937_RS14000	0.27	+0.3
3,197,508	-		DDA3937_RS14000	0.29	-3.3
3,197,508	-		DDA3937_RS14000	0.29	-0.0
3,197,514	+		DDA3937_RS14000	0.30	+0.3
3,197,545	+		DDA3937_RS14000	0.32	+0.2
3,197,586	+		DDA3937_RS14000	0.35	-1.0
3,197,618	+		DDA3937_RS14000	0.37	-3.0
3,197,618	+		DDA3937_RS14000	0.37	-1.5
3,197,630	+		DDA3937_RS14000	0.38	+2.2
3,197,640	+		DDA3937_RS14000	0.39	+1.5
3,197,641	-		DDA3937_RS14000	0.39	-1.6
3,197,675	+		DDA3937_RS14000	0.41	-1.5
3,197,700	+		DDA3937_RS14000	0.43	-1.3
3,197,701	-		DDA3937_RS14000	0.43	-2.1
3,197,844	-		DDA3937_RS14000	0.53	-1.5
3,197,851	-		DDA3937_RS14000	0.54	-0.2
3,197,874	+		DDA3937_RS14000	0.55	-1.0
3,197,878	-		DDA3937_RS14000	0.56	+1.7
3,198,026	+		DDA3937_RS14000	0.66	-1.5
3,198,028	+		DDA3937_RS14000	0.66	+1.2
3,198,028	+		DDA3937_RS14000	0.66	-1.3
3,198,029	-		DDA3937_RS14000	0.67	-0.0
3,198,055	+		DDA3937_RS14000	0.68	+2.2
3,198,056	-		DDA3937_RS14000	0.68	-1.3
3,198,079	+		DDA3937_RS14000	0.70	-1.5
3,198,080	-		DDA3937_RS14000	0.70	+1.3
3,198,080	-		DDA3937_RS14000	0.70	-1.3
3,198,084	+		DDA3937_RS14000	0.70	-2.3
3,198,085	-		DDA3937_RS14000	0.71	-1.8
3,198,085	-		DDA3937_RS14000	0.71	-2.0
3,198,085	-		DDA3937_RS14000	0.71	-0.5
3,198,085	-		DDA3937_RS14000	0.71	+0.7
3,198,086	+		DDA3937_RS14000	0.71	-0.9
3,198,086	+		DDA3937_RS14000	0.71	-1.8
3,198,086	+		DDA3937_RS14000	0.71	-1.8
3,198,087	-		DDA3937_RS14000	0.71	-3.7
3,198,108	+				-0.5