Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13845

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,147,127	-		DDA3937_RS13835	0.16	-0.8
3,147,145	+		DDA3937_RS13835	0.19	-2.4
3,147,145	+		DDA3937_RS13835	0.19	-0.2
3,147,146	-				+1.6
3,147,183	-		DDA3937_RS13835	0.25	+0.6
3,147,224	+		DDA3937_RS13835	0.31	-2.0
3,147,325	+		DDA3937_RS13835	0.47	-2.1
3,147,325	+		DDA3937_RS13835	0.47	+1.7
3,147,325	+		DDA3937_RS13835	0.47	-1.7
3,147,375	+		DDA3937_RS13835	0.55	+0.5
3,147,376	-		DDA3937_RS13835	0.55	+1.3
3,147,376	-		DDA3937_RS13835	0.55	+1.8
3,147,414	+		DDA3937_RS13835	0.61	-0.4
3,147,415	-		DDA3937_RS13835	0.61	+1.1
3,147,415	-		DDA3937_RS13835	0.61	+1.3
3,147,415	-		DDA3937_RS13835	0.61	-2.1
3,147,417	+		DDA3937_RS13835	0.61	-0.8
3,147,418	-		DDA3937_RS13835	0.61	+0.1
3,147,462	-		DDA3937_RS13835	0.68	+1.2
3,147,474	+		DDA3937_RS13835	0.70	-3.3
3,147,474	+		DDA3937_RS13835	0.70	-2.2
3,147,475	-		DDA3937_RS13835	0.70	-1.8
3,147,475	-		DDA3937_RS13835	0.70	-1.8
3,147,655	+				-0.4
3,147,656	-				-1.4
3,147,656	-				+1.0
3,147,656	-				-2.6
3,147,703	+				-0.4
3,147,703	+				+1.0
3,147,703	+				-1.8
3,147,704	-				+2.7
3,147,704	-				+0.6
3,147,704	-				+2.0
3,147,704	-				+0.2
3,147,704	-				+0.6
3,147,708	-				-1.2
3,147,766	-		DDA3937_RS13840	0.30	+2.2
3,147,766	-		DDA3937_RS13840	0.30	-2.2
3,147,766	-		DDA3937_RS13840	0.30	-1.4
3,147,856	+		DDA3937_RS13840	0.62	-2.6
3,147,856	+		DDA3937_RS13840	0.62	+0.5
3,147,856	+		DDA3937_RS13840	0.62	+1.1
3,147,857	-		DDA3937_RS13840	0.62	+1.4
3,147,857	-		DDA3937_RS13840	0.62	-2.1
3,147,950	-				+1.2
3,147,962	-				+0.9
3,148,088	+				+2.2
3,148,088	+				-2.0
3,148,088	+				+0.2
3,148,088	+				-1.6
3,148,088	+				-2.2
3,148,088	+				-0.5
3,148,154	+				+0.9
3,148,181	-				-3.6
3,148,245	-				+2.8
3,148,245	-				-1.0
3,148,258	+		DDA3937_RS13845	0.10	-1.1
3,148,259	-		DDA3937_RS13845	0.10	-3.4
3,148,313	+		DDA3937_RS13845	0.12	-0.4
3,148,313	+		DDA3937_RS13845	0.12	-2.1
3,148,313	+		DDA3937_RS13845	0.12	-0.8
3,148,313	+		DDA3937_RS13845	0.12	+1.2
3,148,313	+		DDA3937_RS13845	0.12	-2.6
3,148,313	+		DDA3937_RS13845	0.12	+0.4
3,148,313	+		DDA3937_RS13845	0.12	+0.6
3,148,314	-		DDA3937_RS13845	0.12	-0.8
3,148,314	-		DDA3937_RS13845	0.12	+0.2
3,148,314	-		DDA3937_RS13845	0.12	-1.6
3,148,314	-		DDA3937_RS13845	0.12	-1.6
3,148,314	-		DDA3937_RS13845	0.12	+1.2
3,148,314	-		DDA3937_RS13845	0.12	+1.4
3,148,314	-		DDA3937_RS13845	0.12	-1.4
3,148,314	-		DDA3937_RS13845	0.12	-1.5
3,148,323	-		DDA3937_RS13845	0.13	+3.0
3,148,469	+		DDA3937_RS13845	0.18	-1.6
3,148,469	+		DDA3937_RS13845	0.18	-3.2
3,148,470	-		DDA3937_RS13845	0.18	+1.0
3,148,470	-		DDA3937_RS13845	0.18	+3.2
3,148,493	+		DDA3937_RS13845	0.19	+0.3
3,148,493	+		DDA3937_RS13845	0.19	+1.6
3,148,493	+		DDA3937_RS13845	0.19	-0.4
3,148,494	-				+1.6
3,148,494	-		DDA3937_RS13845	0.19	-0.3
3,148,494	-		DDA3937_RS13845	0.19	-2.9
3,148,494	-		DDA3937_RS13845	0.19	+0.2
3,148,494	-		DDA3937_RS13845	0.19	-1.4
3,148,494	-		DDA3937_RS13845	0.19	+1.0
3,148,494	-		DDA3937_RS13845	0.19	-1.4
3,148,494	-		DDA3937_RS13845	0.19	-0.1
3,148,507	-		DDA3937_RS13845	0.19	-0.5
3,148,517	+		DDA3937_RS13845	0.20	+0.8
3,148,517	+		DDA3937_RS13845	0.20	-2.8
3,148,518	-		DDA3937_RS13845	0.20	-2.2
3,148,580	+		DDA3937_RS13845	0.22	-0.0
3,148,581	-		DDA3937_RS13845	0.22	-0.4
3,148,637	+		DDA3937_RS13845	0.24	-0.8
3,148,638	-		DDA3937_RS13845	0.24	-0.4
3,148,769	+		DDA3937_RS13845	0.29	-1.2
3,148,770	-		DDA3937_RS13845	0.29	-0.2
3,148,770	-		DDA3937_RS13845	0.29	+0.7
3,148,793	+		DDA3937_RS13845	0.30	-0.8
3,148,793	+		DDA3937_RS13845	0.30	+1.3
3,148,794	-		DDA3937_RS13845	0.30	-1.6
3,148,794	-		DDA3937_RS13845	0.30	-3.6
3,148,794	-		DDA3937_RS13845	0.30	+1.0
3,148,794	-		DDA3937_RS13845	0.30	+0.1
3,148,794	-		DDA3937_RS13845	0.30	-1.0
3,148,794	-		DDA3937_RS13845	0.30	+2.8
3,148,814	+		DDA3937_RS13845	0.31	-1.2
3,148,814	+		DDA3937_RS13845	0.31	-0.5
3,148,814	+		DDA3937_RS13845	0.31	+0.6
3,148,815	-		DDA3937_RS13845	0.31	-0.3
3,148,815	-		DDA3937_RS13845	0.31	+2.9
3,148,835	+		DDA3937_RS13845	0.31	-2.0
3,148,835	+		DDA3937_RS13845	0.31	+0.8
3,148,835	+				+3.3
3,148,835	+		DDA3937_RS13845	0.31	+2.0
3,148,836	-		DDA3937_RS13845	0.31	+2.0
3,148,836	-		DDA3937_RS13845	0.31	-0.0
3,148,836	-		DDA3937_RS13845	0.31	-1.8
3,148,893	-		DDA3937_RS13845	0.33	-1.9
3,148,893	-		DDA3937_RS13845	0.33	-1.9
3,148,994	+		DDA3937_RS13845	0.37	-2.8
3,148,994	+		DDA3937_RS13845	0.37	+1.1
3,148,994	+		DDA3937_RS13845	0.37	+0.1
3,148,995	-		DDA3937_RS13845	0.37	+4.4
3,148,995	-		DDA3937_RS13845	0.37	-1.6
3,148,995	-		DDA3937_RS13845	0.37	+3.4
3,149,036	+				-0.4
3,149,036	+		DDA3937_RS13845	0.39	-0.8
3,149,037	-		DDA3937_RS13845	0.39	-1.5
3,149,037	-		DDA3937_RS13845	0.39	-0.8
3,149,052	-		DDA3937_RS13845	0.39	+1.1
3,149,052	-		DDA3937_RS13845	0.39	-3.1
3,149,055	+		DDA3937_RS13845	0.39	-2.7
3,149,055	+				+1.8
3,149,056	-		DDA3937_RS13845	0.39	-0.8
3,149,220	-		DDA3937_RS13845	0.45	-3.0
3,149,348	+		DDA3937_RS13845	0.50	-0.4
3,149,372	+		DDA3937_RS13845	0.51	+1.8
3,149,373	-		DDA3937_RS13845	0.51	+0.1
3,149,414	+		DDA3937_RS13845	0.52	-2.4
3,149,458	+		DDA3937_RS13845	0.54	-1.6
3,149,516	+		DDA3937_RS13845	0.56	-2.1
3,149,516	+		DDA3937_RS13845	0.56	-2.1
3,149,516	+		DDA3937_RS13845	0.56	+2.4
3,149,519	+		DDA3937_RS13845	0.56	-1.8
3,149,519	+		DDA3937_RS13845	0.56	+1.8
3,149,520	-		DDA3937_RS13845	0.56	-3.5
3,149,520	-		DDA3937_RS13845	0.56	-0.3
3,149,520	-		DDA3937_RS13845	0.56	-1.6
3,149,581	+		DDA3937_RS13845	0.58	+0.6
3,149,654	+		DDA3937_RS13845	0.61	+1.7
3,149,655	-		DDA3937_RS13845	0.61	-1.4
3,149,704	+		DDA3937_RS13845	0.63	-2.7
3,149,711	+		DDA3937_RS13845	0.63	-0.7
3,149,720	-		DDA3937_RS13845	0.64	+2.0
3,149,720	-		DDA3937_RS13845	0.64	-2.1
3,149,765	+		DDA3937_RS13845	0.65	-3.0
3,149,766	-		DDA3937_RS13845	0.65	-2.1
3,149,972	-		DDA3937_RS13845	0.73	+1.0
3,149,973	+		DDA3937_RS13845	0.73	-1.4
3,150,106	+		DDA3937_RS13845	0.78	-1.6
3,150,106	+		DDA3937_RS13845	0.78	-2.3
3,150,107	-		DDA3937_RS13845	0.78	-0.8
3,150,107	-		DDA3937_RS13845	0.78	+1.4
3,150,188	+		DDA3937_RS13845	0.81	-0.4
3,150,188	+		DDA3937_RS13845	0.81	-0.8
3,150,189	-		DDA3937_RS13845	0.81	+1.7
3,150,189	-		DDA3937_RS13845	0.81	+1.2
3,150,298	+		DDA3937_RS13845	0.85	-1.1
3,150,298	+		DDA3937_RS13845	0.85	+0.5
3,150,298	+		DDA3937_RS13845	0.85	-2.7
3,150,298	+		DDA3937_RS13845	0.85	+2.1
3,150,299	-		DDA3937_RS13845	0.85	-2.0
3,150,449	+				-1.2
3,150,450	-				-0.0
3,150,482	+				+1.6
3,150,482	+				-1.9
3,150,482	+				-2.3
3,150,482	+				-1.4
3,150,482	+				-2.0
3,150,483	-				-1.4
3,150,483	-				-2.2
3,150,483	-				+0.7
3,150,518	+				+3.6
3,150,518	+				-1.2
3,150,518	+				-1.4
3,150,518	+				-0.4
3,150,518	+				+0.1
3,150,518	+				+0.5
3,150,518	+				+0.2
3,150,518	+				-1.4
3,150,518	+				-0.4
3,150,519	-				-2.0
3,150,519	-				+0.3
3,150,519	-				-0.4
3,150,519	-				+1.4
3,150,519	-				-3.2
3,150,519	-				-0.8
3,150,520	+				+0.9
3,150,520	+				+3.5
3,150,520	+				+0.6
3,150,520	+				-3.4
3,150,520	+				+0.3
3,150,521	-				-0.0
3,150,521	-				+0.5
3,150,521	-				-0.8
3,150,521	-				-0.0
3,150,521	-				+0.1
3,150,521	-				+1.2
3,150,521	-				-1.0
3,150,521	-				+1.7
3,150,722	+				-2.4
3,150,722	+				+3.2
3,150,781	+				+0.7
3,150,781	+				+0.0
3,150,781	+				-1.8
3,150,781	+				-1.1
3,150,781	+				-0.2
3,150,782	-				-2.5
3,150,782	-				+1.6
3,150,782	-				+0.7
3,150,782	-				-1.8
3,150,782	-				-2.1
3,150,782	-				-2.2
3,150,782	-				-1.0
3,150,802	+				-2.7
3,150,900	+		DDA3937_RS13850	0.21	+1.8
3,150,901	-		DDA3937_RS13850	0.21	-0.8
3,150,902	+		DDA3937_RS13850	0.22	-2.6
3,150,903	-		DDA3937_RS13850	0.22	-1.6
3,150,921	+		DDA3937_RS13850	0.24	-1.6
3,150,922	-		DDA3937_RS13850	0.24	-1.1
3,150,922	-		DDA3937_RS13850	0.24	-1.0
3,150,922	-		DDA3937_RS13850	0.24	+0.2
3,150,923	+		DDA3937_RS13850	0.25	-3.1
3,150,923	+		DDA3937_RS13850	0.25	-1.0
3,150,924	-		DDA3937_RS13850	0.25	+0.6
3,151,087	+		DDA3937_RS13850	0.47	-1.0
3,151,087	+		DDA3937_RS13850	0.47	+1.5
3,151,088	-		DDA3937_RS13850	0.48	-0.4
3,151,089	+		DDA3937_RS13850	0.48	-2.1
3,151,089	+		DDA3937_RS13850	0.48	+0.5
3,151,089	+		DDA3937_RS13850	0.48	-0.2
3,151,089	+		DDA3937_RS13850	0.48	-0.3
3,151,089	+		DDA3937_RS13850	0.48	-1.6
3,151,090	-		DDA3937_RS13850	0.48	-1.9
3,151,090	-		DDA3937_RS13850	0.48	-2.3
3,151,091	+		DDA3937_RS13850	0.48	-1.0
3,151,112	+		DDA3937_RS13850	0.51	-1.0
3,151,112	+		DDA3937_RS13850	0.51	-1.0
3,151,113	-		DDA3937_RS13850	0.51	-3.2
3,151,113	-		DDA3937_RS13850	0.51	+1.4
3,151,169	-		DDA3937_RS13850	0.59	-2.8
3,151,220	+		DDA3937_RS13850	0.66	-1.2
3,151,221	-		DDA3937_RS13850	0.66	-0.4
3,151,559	-		DDA3937_RS22340	0.38	-2.2
3,151,559	-		DDA3937_RS22340	0.38	+0.2
3,151,559	-		DDA3937_RS22340	0.38	-1.9
3,151,559	-		DDA3937_RS22340	0.38	-3.1
3,151,641	-		DDA3937_RS22340	0.74	-3.5
3,151,696	+				-1.3
3,151,696	+				-2.5
3,151,696	+				+0.4
3,151,696	+				+0.2
3,151,697	-				-3.4
3,151,709	+				-2.6
3,151,709	+				-1.6
3,151,710	-				+2.2
3,151,710	-				-1.4
3,151,710	-				-3.7
3,151,721	+				-0.9
3,151,721	+				-2.0