Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,967,469	+		DDA3937_RS13000	0.85	+1.5
2,967,469	+		DDA3937_RS13000	0.85	-1.0
2,967,470	-		DDA3937_RS13000	0.85	-0.3
2,967,470	-		DDA3937_RS13000	0.85	-1.4
2,967,470	-		DDA3937_RS13000	0.85	+0.0
2,967,470	-		DDA3937_RS13000	0.85	-1.4
2,967,470	-		DDA3937_RS13000	0.85	-1.7
2,967,822	+				+1.6
2,967,870	+				+0.6
2,967,949	-				-2.5
2,967,981	+				-0.7
2,967,981	+				-0.6
2,967,981	+				+0.0
2,967,981	+				+1.2
2,967,981	+				-1.7
2,967,981	+				-0.4
2,967,981	+				-0.6
2,967,981	+				-2.2
2,967,981	+				+1.1
2,967,981	+				-0.8
2,967,981	+				-0.5
2,967,981	+				-1.0
2,967,981	+				-0.1
2,967,981	+				+1.4
2,967,981	+				-0.7
2,967,982	-				+2.0
2,967,982	-				+1.6
2,967,982	-				+0.8
2,967,982	-				-0.7
2,967,982	-				-2.8
2,967,982	-				-2.3
2,967,982	-				-1.2
2,967,982	-				+0.6
2,967,982	-				-0.4
2,967,982	-				+1.5
2,967,982	-				-1.7
2,967,982	-				-1.0
2,967,982	-				-2.5
2,967,982	-				+1.6
2,967,982	-				-1.2
2,967,982	-				-1.0
2,967,982	-				+0.0
2,967,982	-				-0.4
2,967,982	-				-1.0
2,967,982	-				+1.3
2,967,982	-				+0.6
2,967,982	-				-2.5
2,967,982	-				-1.5
2,967,985	+				+2.2
2,967,985	+				-2.2
2,967,985	+				-2.5
2,967,985	+				+0.4
2,967,985	+				-2.0
2,967,985	+				-1.2
2,967,985	+				-0.8
2,967,985	+				+4.4
2,967,985	+				-1.0
2,967,986	-				+1.7
2,967,986	-				-1.0
2,967,986	-				-0.7
2,968,030	+				+0.3
2,968,054	+				+0.9
2,968,054	+				+0.7
2,968,055	-				+2.3
2,968,055	-				+1.4
2,968,055	-				-0.5
2,968,055	-				-1.0
2,968,055	-				-2.4
2,968,055	-				-1.4
2,968,056	+				+0.8
2,968,056	+				-0.5
2,968,056	+				-0.3
2,968,056	+				+0.7
2,968,056	+				-0.7
2,968,056	+				+1.2
2,968,056	+				-1.4
2,968,056	+				+2.7
2,968,056	+				+0.2
2,968,057	-				+0.7
2,968,057	-				+0.9
2,968,057	-				-1.0
2,968,057	-				+1.8
2,968,057	-				-2.4
2,968,057	-				+3.3
2,968,057	-				-0.1
2,968,057	-				+1.1
2,968,067	+				+2.8
2,968,081	+				+4.2
2,968,118	+				-1.0
2,968,197	+				-2.1
2,968,198	-				-0.2
2,968,226	+				-1.0
2,968,227	-				-1.7
2,968,227	-				+1.8
2,968,227	-				-1.0
2,968,261	+				+0.5
2,968,262	-				-2.7
2,968,262	-				-0.7
2,968,264	-				-2.5
2,968,264	-				+1.6
2,968,264	-				-1.2
2,968,264	-				-1.2
2,968,264	-				-1.7
2,968,264	-				+1.4
2,968,264	-				-1.2
2,968,283	+				-2.8
2,968,284	-				+0.3
2,968,296	-				+1.0
2,968,322	-				+1.3
2,968,354	-				-3.0
2,968,357	-				-3.1
2,968,357	-				-0.7
2,968,370	+				-0.5
2,968,370	+				+0.4
2,968,371	-				+0.0
2,968,389	+				-2.6
2,968,427	+				+0.0
2,968,428	-				-0.4
2,968,428	-				+0.3
2,968,514	+		DDA3937_RS13005	0.15	-2.4
2,968,514	+		DDA3937_RS13005	0.15	-2.0
2,968,515	-		DDA3937_RS13005	0.15	-0.4
2,968,515	-		DDA3937_RS13005	0.15	-2.0
2,968,515	-		DDA3937_RS13005	0.15	-0.4
2,968,575	+		DDA3937_RS13005	0.19	+1.5
2,968,575	+		DDA3937_RS13005	0.19	-2.1
2,968,575	+		DDA3937_RS13005	0.19	+1.0
2,968,575	+		DDA3937_RS13005	0.19	-0.6
2,968,575	+		DDA3937_RS13005	0.19	-0.1
2,968,576	-		DDA3937_RS13005	0.19	+1.3
2,968,632	-		DDA3937_RS13005	0.23	-2.5
2,968,688	+		DDA3937_RS13005	0.26	-1.4
2,968,688	+		DDA3937_RS13005	0.26	-0.8
2,968,688	+		DDA3937_RS13005	0.26	-2.0
2,968,688	+		DDA3937_RS13005	0.26	-0.4
2,968,688	+		DDA3937_RS13005	0.26	+1.0
2,968,689	-				+0.6
2,968,689	-		DDA3937_RS13005	0.26	-0.4
2,968,689	-		DDA3937_RS13005	0.26	-0.0
2,968,692	+		DDA3937_RS13005	0.27	-0.8
2,968,692	+		DDA3937_RS13005	0.27	-2.5
2,968,692	+		DDA3937_RS13005	0.27	+0.7
2,968,692	+				-0.4
2,968,693	-		DDA3937_RS13005	0.27	-1.2
2,968,693	-		DDA3937_RS13005	0.27	-1.2
2,968,693	-		DDA3937_RS13005	0.27	+1.2
2,968,732	+		DDA3937_RS13005	0.29	+0.8
2,968,732	+		DDA3937_RS13005	0.29	+1.7
2,968,732	+		DDA3937_RS13005	0.29	-1.2
2,968,732	+		DDA3937_RS13005	0.29	-0.4
2,968,732	+		DDA3937_RS13005	0.29	-2.1
2,968,732	+		DDA3937_RS13005	0.29	-1.2
2,968,733	-		DDA3937_RS13005	0.29	-0.7
2,968,733	-		DDA3937_RS13005	0.29	+2.6
2,968,733	-		DDA3937_RS13005	0.29	-1.8
2,968,733	-		DDA3937_RS13005	0.29	+1.2
2,968,733	-		DDA3937_RS13005	0.29	-1.4
2,968,733	-		DDA3937_RS13005	0.29	-1.8
2,968,805	+		DDA3937_RS13005	0.34	-2.8
2,968,826	+		DDA3937_RS13005	0.36	-1.5
2,968,826	+		DDA3937_RS13005	0.36	+1.1
2,968,827	-		DDA3937_RS13005	0.36	+0.2
2,968,841	+		DDA3937_RS13005	0.37	+0.4
2,968,868	+		DDA3937_RS13005	0.38	-2.0
2,968,869	-		DDA3937_RS13005	0.38	+0.3
2,968,872	-		DDA3937_RS13005	0.39	-1.7
2,968,923	+		DDA3937_RS13005	0.42	+1.0
2,968,923	+		DDA3937_RS13005	0.42	+2.2
2,968,923	+		DDA3937_RS13005	0.42	-0.5
2,968,923	+				+0.6
2,968,923	+		DDA3937_RS13005	0.42	+0.0
2,968,924	-		DDA3937_RS13005	0.42	-2.1
2,968,924	-		DDA3937_RS13005	0.42	+3.6
2,969,007	+		DDA3937_RS13005	0.48	-2.2
2,969,007	+		DDA3937_RS13005	0.48	-2.0
2,969,007	+		DDA3937_RS13005	0.48	+1.0
2,969,008	-		DDA3937_RS13005	0.48	-1.4
2,969,008	-				+0.6
2,969,008	-		DDA3937_RS13005	0.48	+0.9
2,969,009	+		DDA3937_RS13005	0.48	+1.0
2,969,009	+		DDA3937_RS13005	0.48	+0.4
2,969,009	+		DDA3937_RS13005	0.48	-0.7
2,969,009	+		DDA3937_RS13005	0.48	-1.2
2,969,009	+		DDA3937_RS13005	0.48	-2.5
2,969,009	+		DDA3937_RS13005	0.48	+1.4
2,969,010	-		DDA3937_RS13005	0.48	-2.2
2,969,010	-		DDA3937_RS13005	0.48	+2.9
2,969,010	-		DDA3937_RS13005	0.48	+1.2
2,969,010	-		DDA3937_RS13005	0.48	+0.1
2,969,010	-				+0.0
2,969,013	+		DDA3937_RS13005	0.48	+1.5
2,969,014	-		DDA3937_RS13005	0.48	+2.8
2,969,037	+		DDA3937_RS13005	0.50	+0.0
2,969,082	+		DDA3937_RS13005	0.53	+0.8
2,969,083	-		DDA3937_RS13005	0.53	+0.0
2,969,085	+				+1.6
2,969,085	+		DDA3937_RS13005	0.53	+3.3
2,969,086	-		DDA3937_RS13005	0.53	-0.0
2,969,086	-		DDA3937_RS13005	0.53	+1.6
2,969,086	-		DDA3937_RS13005	0.53	-0.2
2,969,086	-		DDA3937_RS13005	0.53	+0.1
2,969,096	+		DDA3937_RS13005	0.54	-0.9
2,969,122	-		DDA3937_RS13005	0.55	-2.0
2,969,169	-		DDA3937_RS13005	0.58	+0.6
2,969,236	+		DDA3937_RS13005	0.63	-2.0
2,969,310	-		DDA3937_RS13005	0.68	-2.1
2,969,342	+		DDA3937_RS13005	0.70	+1.7
2,969,342	+		DDA3937_RS13005	0.70	-0.3
2,969,342	+		DDA3937_RS13005	0.70	-2.8
2,969,343	-		DDA3937_RS13005	0.70	-1.4
2,969,433	-		DDA3937_RS13005	0.76	+2.0
2,969,527	-		DDA3937_RS13005	0.82	-0.7
2,969,527	-		DDA3937_RS13005	0.82	-2.1
2,969,733	+				+2.9
2,969,733	+				-0.5
2,969,733	+				+1.9
2,969,733	+				+1.1
2,969,734	-				+0.7
2,969,734	-				+0.0
2,969,734	-				+0.0
2,969,839	+				+0.3
2,969,858	-				+0.8
2,969,858	-				-1.5
2,969,858	-				-1.9
2,969,939	+				+1.3
2,969,939	+				+1.2
2,969,940	-				+0.0
2,969,940	-				-1.2
2,970,017	+				+3.4
2,970,203	+		DDA3937_RS13010	0.21	+0.4
2,970,203	+		DDA3937_RS13010	0.21	-2.7
2,970,203	+		DDA3937_RS13010	0.21	-0.2
2,970,203	+		DDA3937_RS13010	0.21	-0.7
2,970,203	+		DDA3937_RS13010	0.21	-3.9
2,970,203	+		DDA3937_RS13010	0.21	-1.4
2,970,310	+		DDA3937_RS13010	0.29	-1.7
2,970,310	+		DDA3937_RS13010	0.29	+1.1
2,970,310	+		DDA3937_RS13010	0.29	+0.0
2,970,311	-		DDA3937_RS13010	0.29	-2.0
2,970,311	-		DDA3937_RS13010	0.29	+0.0