Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,946,323	+		DDA3937_RS12910	0.32	-1.6
2,946,323	+		DDA3937_RS12910	0.32	-0.9
2,946,342	-		DDA3937_RS12910	0.34	-2.1
2,946,349	+		DDA3937_RS12910	0.34	-2.7
2,946,354	+		DDA3937_RS12910	0.35	-1.0
2,946,355	-		DDA3937_RS12910	0.35	-0.8
2,946,369	+		DDA3937_RS12910	0.36	-0.1
2,946,369	+		DDA3937_RS12910	0.36	+0.3
2,946,369	+		DDA3937_RS12910	0.36	+0.0
2,946,370	-		DDA3937_RS12910	0.36	-3.1
2,946,370	-		DDA3937_RS12910	0.36	-2.6
2,946,370	-		DDA3937_RS12910	0.36	-0.7
2,946,371	+		DDA3937_RS12910	0.36	+0.0
2,946,475	+		DDA3937_RS12910	0.46	-2.2
2,946,476	-		DDA3937_RS12910	0.46	-0.4
2,946,476	-		DDA3937_RS12910	0.46	-1.6
2,946,518	+		DDA3937_RS12910	0.50	+0.4
2,946,518	+		DDA3937_RS12910	0.50	+0.6
2,946,518	+		DDA3937_RS12910	0.50	+0.7
2,946,565	+		DDA3937_RS12910	0.54	-3.2
2,946,565	+				+0.6
2,946,578	+		DDA3937_RS12910	0.55	-1.6
2,946,578	+		DDA3937_RS12910	0.55	-1.0
2,946,579	-		DDA3937_RS12910	0.55	-1.0
2,946,579	-		DDA3937_RS12910	0.55	-1.1
2,946,579	-		DDA3937_RS12910	0.55	-1.7
2,946,579	-		DDA3937_RS12910	0.55	+2.2
2,946,595	+		DDA3937_RS12910	0.57	-3.3
2,946,596	-		DDA3937_RS12910	0.57	-0.4
2,946,612	+		DDA3937_RS12910	0.58	-1.2
2,946,612	+		DDA3937_RS12910	0.58	+3.6
2,946,613	-		DDA3937_RS12910	0.59	-3.5
2,946,613	-		DDA3937_RS12910	0.59	-1.6
2,946,662	+		DDA3937_RS12910	0.63	-0.4
2,946,663	-		DDA3937_RS12910	0.63	-2.0
2,946,663	-		DDA3937_RS12910	0.63	-2.5
2,946,663	-		DDA3937_RS12910	0.63	+2.5
2,946,693	+		DDA3937_RS12910	0.66	+1.7
2,946,693	+		DDA3937_RS12910	0.66	-3.3
2,946,693	+		DDA3937_RS12910	0.66	-0.3
2,946,694	-		DDA3937_RS12910	0.66	-1.4
2,946,694	-		DDA3937_RS12910	0.66	-3.3
2,946,704	+		DDA3937_RS12910	0.67	-3.6
2,946,705	-		DDA3937_RS12910	0.67	+1.4
2,946,705	-		DDA3937_RS12910	0.67	-2.2
2,946,707	+		DDA3937_RS12910	0.67	-2.1
2,946,707	+		DDA3937_RS12910	0.67	-1.7
2,946,707	+		DDA3937_RS12910	0.67	+0.1
2,946,707	+		DDA3937_RS12910	0.67	-0.7
2,946,708	-		DDA3937_RS12910	0.67	-1.8
2,946,708	-		DDA3937_RS12910	0.67	-1.3
2,946,711	+		DDA3937_RS12910	0.68	-2.3
2,946,711	+		DDA3937_RS12910	0.68	-1.2
2,946,712	-		DDA3937_RS12910	0.68	+1.2
2,946,722	+		DDA3937_RS12910	0.69	-1.2
2,946,723	-		DDA3937_RS12910	0.69	+1.8
2,946,723	-		DDA3937_RS12910	0.69	-2.1
2,946,723	-		DDA3937_RS12910	0.69	-2.1
2,946,726	+		DDA3937_RS12910	0.69	+0.4
2,946,726	+		DDA3937_RS12910	0.69	-2.3
2,946,726	+		DDA3937_RS12910	0.69	+0.9
2,946,726	+		DDA3937_RS12910	0.69	+1.0
2,946,726	+		DDA3937_RS12910	0.69	-2.8
2,946,727	-		DDA3937_RS12910	0.69	-2.1
2,946,733	+				+0.6
2,946,733	+		DDA3937_RS12910	0.70	+0.1
2,946,734	-		DDA3937_RS12910	0.70	+1.6
2,946,754	+		DDA3937_RS12910	0.72	+0.2
2,946,754	+		DDA3937_RS12910	0.72	-2.0
2,946,754	+		DDA3937_RS12910	0.72	+0.2
2,946,755	-		DDA3937_RS12910	0.72	-2.8
2,946,782	+		DDA3937_RS12910	0.74	-0.3
2,946,794	-		DDA3937_RS12910	0.75	-3.0
2,946,806	-		DDA3937_RS12910	0.76	-0.7
2,946,849	+		DDA3937_RS12910	0.80	+1.1
2,946,849	+		DDA3937_RS12910	0.80	-0.0
2,946,849	+				+1.6
2,946,849	+		DDA3937_RS12910	0.80	+2.0
2,946,849	+		DDA3937_RS12910	0.80	+1.1
2,946,850	-		DDA3937_RS12910	0.80	+1.4
2,946,850	-		DDA3937_RS12910	0.80	+1.1
2,946,853	+		DDA3937_RS12910	0.81	-2.5
2,946,853	+		DDA3937_RS12910	0.81	-1.8
2,946,854	-		DDA3937_RS12910	0.81	+0.0
2,946,854	-		DDA3937_RS12910	0.81	-0.1
2,946,854	-		DDA3937_RS12910	0.81	+0.8
2,946,854	-		DDA3937_RS12910	0.81	-2.2
2,946,854	-		DDA3937_RS12910	0.81	-1.4
2,946,854	-		DDA3937_RS12910	0.81	-2.4
2,946,854	-		DDA3937_RS12910	0.81	-0.6
2,946,854	-		DDA3937_RS12910	0.81	-1.3
2,946,875	+		DDA3937_RS12910	0.83	+1.3
2,946,875	+		DDA3937_RS12910	0.83	-2.7
2,946,876	-		DDA3937_RS12910	0.83	-1.4
2,946,905	+		DDA3937_RS12910	0.86	-1.0
2,946,905	+		DDA3937_RS12910	0.86	+1.7
2,946,905	+		DDA3937_RS12910	0.86	+1.8
2,946,906	-		DDA3937_RS12910	0.86	+0.0
2,946,906	-		DDA3937_RS12910	0.86	-1.6
2,946,936	+		DDA3937_RS12910	0.88	-1.2
2,946,937	-		DDA3937_RS12910	0.88	-1.8
2,946,937	-		DDA3937_RS12910	0.88	+0.0
2,946,937	-		DDA3937_RS12910	0.88	-1.6
2,946,947	+		DDA3937_RS12910	0.89	-0.0
2,946,988	+				-0.1
2,946,989	-				+0.6
2,947,029	-				-1.8
2,947,051	-				-1.8
2,947,078	+				-1.1
2,947,078	+				-1.2
2,947,082	+				-2.0
2,947,082	+				-0.1
2,947,155	+				-3.1
2,947,213	+				-3.1
2,947,213	+				-2.0
2,947,214	-				-0.2
2,947,214	-				+0.2
2,947,214	-				+1.8
2,947,214	-				-1.0
2,947,223	+				-1.8
2,947,224	-				+1.6
2,947,224	-				-0.8
2,947,224	-				-0.3
2,947,224	-				+1.0
2,947,240	+				-2.8
2,947,240	+				-0.1
2,947,240	+				-0.1
2,947,241	-				+0.9
2,947,241	-				-0.1
2,947,241	-				+0.3
2,947,329	+				-2.7
2,947,329	+				-1.1
2,947,330	-				-1.2
2,947,330	-				+0.3
2,947,330	-				-0.1
2,947,354	+				-2.1
2,947,354	+				-0.6
2,947,354	+				-0.3
2,947,354	+				-0.4
2,947,355	-				+0.2
2,947,355	-				+0.7
2,947,355	-				-0.3
2,947,355	-				+0.6
2,947,355	-				-0.2
2,947,355	-				-0.0
2,947,356	+				+0.4
2,947,357	-				-0.9
2,947,357	-				-1.7
2,947,357	-				+0.3
2,947,372	-		DDA3937_RS12915	0.10	-0.7
2,947,372	-		DDA3937_RS12915	0.10	-0.7
2,947,372	-		DDA3937_RS12915	0.10	-0.7
2,947,382	+		DDA3937_RS12915	0.11	-3.3
2,947,383	-		DDA3937_RS12915	0.11	-0.5
2,947,383	-		DDA3937_RS12915	0.11	-2.3
2,947,383	-		DDA3937_RS12915	0.11	+0.9
2,947,383	-		DDA3937_RS12915	0.11	-2.0
2,947,386	+		DDA3937_RS12915	0.12	+0.2
2,947,386	+		DDA3937_RS12915	0.12	-0.8
2,947,386	+		DDA3937_RS12915	0.12	+1.2
2,947,386	+		DDA3937_RS12915	0.12	-0.8
2,947,386	+		DDA3937_RS12915	0.12	-2.8
2,947,386	+		DDA3937_RS12915	0.12	+1.3
2,947,386	+		DDA3937_RS12915	0.12	-2.8
2,947,386	+		DDA3937_RS12915	0.12	-1.0
2,947,386	+		DDA3937_RS12915	0.12	-0.7
2,947,387	-		DDA3937_RS12915	0.12	-3.6
2,947,387	-		DDA3937_RS12915	0.12	-0.7
2,947,387	-		DDA3937_RS12915	0.12	+0.0
2,947,387	-		DDA3937_RS12915	0.12	-0.5
2,947,387	-		DDA3937_RS12915	0.12	+0.5
2,947,387	-		DDA3937_RS12915	0.12	-0.2
2,947,387	-		DDA3937_RS12915	0.12	-2.6
2,947,387	-		DDA3937_RS12915	0.12	-4.0
2,947,387	-		DDA3937_RS12915	0.12	+0.4
2,947,395	+		DDA3937_RS12915	0.12	+0.0
2,947,396	-		DDA3937_RS12915	0.12	-0.9
2,947,441	+		DDA3937_RS12915	0.16	-0.9
2,947,460	+		DDA3937_RS12915	0.18	-0.9
2,947,500	+		DDA3937_RS12915	0.21	+1.1
2,947,500	+		DDA3937_RS12915	0.21	-2.1
2,947,501	-		DDA3937_RS12915	0.21	-1.0
2,947,568	+		DDA3937_RS12915	0.27	-1.7
2,947,568	+		DDA3937_RS12915	0.27	-1.5
2,947,568	+		DDA3937_RS12915	0.27	-0.3
2,947,568	+		DDA3937_RS12915	0.27	-0.8
2,947,568	+		DDA3937_RS12915	0.27	+0.2
2,947,568	+		DDA3937_RS12915	0.27	-0.4
2,947,569	-		DDA3937_RS12915	0.27	-1.0
2,947,569	-		DDA3937_RS12915	0.27	+0.5
2,947,614	+		DDA3937_RS12915	0.31	+0.6
2,947,614	+		DDA3937_RS12915	0.31	+0.3
2,947,614	+		DDA3937_RS12915	0.31	+0.1
2,947,614	+		DDA3937_RS12915	0.31	+0.8
2,947,615	-		DDA3937_RS12915	0.31	-0.3
2,947,687	+		DDA3937_RS12915	0.37	-0.8
2,947,687	+		DDA3937_RS12915	0.37	-0.6
2,947,688	-		DDA3937_RS12915	0.37	-3.9
2,947,688	-		DDA3937_RS12915	0.37	+0.3
2,947,688	-		DDA3937_RS12915	0.37	-0.0
2,947,688	-		DDA3937_RS12915	0.37	-1.8
2,947,688	-		DDA3937_RS12915	0.37	-0.3
2,947,688	-		DDA3937_RS12915	0.37	-2.5
2,947,688	-		DDA3937_RS12915	0.37	-1.8
2,947,693	+		DDA3937_RS12915	0.37	-0.8
2,947,693	+		DDA3937_RS12915	0.37	-0.1
2,947,693	+		DDA3937_RS12915	0.37	-0.9
2,947,693	+		DDA3937_RS12915	0.37	-0.6
2,947,693	+		DDA3937_RS12915	0.37	-0.7
2,947,693	+		DDA3937_RS12915	0.37	+0.4
2,947,693	+		DDA3937_RS12915	0.37	-0.7
2,947,694	-		DDA3937_RS12915	0.37	-1.6
2,947,694	-		DDA3937_RS12915	0.37	-2.2
2,947,694	-		DDA3937_RS12915	0.37	-0.7
2,947,694	-		DDA3937_RS12915	0.37	-0.2
2,947,694	-		DDA3937_RS12915	0.37	-1.9
2,947,694	-		DDA3937_RS12915	0.37	-1.4
2,947,694	-		DDA3937_RS12915	0.37	-0.1
2,947,694	-		DDA3937_RS12915	0.37	-2.2
2,947,694	-		DDA3937_RS12915	0.37	-1.7
2,947,694	-		DDA3937_RS12915	0.37	-1.2
2,947,696	+		DDA3937_RS12915	0.38	-3.3
2,947,696	+		DDA3937_RS12915	0.38	-1.4
2,947,696	+		DDA3937_RS12915	0.38	-2.5
2,947,696	+		DDA3937_RS12915	0.38	-0.2
2,947,696	+		DDA3937_RS12915	0.38	+1.1
2,947,696	+		DDA3937_RS12915	0.38	-0.3
2,947,696	+		DDA3937_RS12915	0.38	-0.9
2,947,697	-		DDA3937_RS12915	0.38	-0.7
2,947,697	-		DDA3937_RS12915	0.38	-1.1
2,947,697	-		DDA3937_RS12915	0.38	-0.0
2,947,697	-		DDA3937_RS12915	0.38	-0.6
2,947,697	-		DDA3937_RS12915	0.38	-0.1
2,947,697	-		DDA3937_RS12915	0.38	-3.5
2,947,697	-		DDA3937_RS12915	0.38	-0.4
2,947,731	+		DDA3937_RS12915	0.40	-0.4
2,947,732	-		DDA3937_RS12915	0.41	-1.5
2,947,732	-		DDA3937_RS12915	0.41	-1.2
2,947,732	-		DDA3937_RS12915	0.41	-1.6
2,947,961	+		DDA3937_RS12915	0.60	-1.4
2,947,961	+		DDA3937_RS12915	0.60	-0.1
2,947,961	+		DDA3937_RS12915	0.60	-1.1
2,947,962	-		DDA3937_RS12915	0.60	-0.7
2,947,962	-		DDA3937_RS12915	0.60	-1.5
2,947,978	+		DDA3937_RS12915	0.61	-0.5
2,948,000	-		DDA3937_RS12915	0.63	-1.4
2,948,000	-		DDA3937_RS12915	0.63	-0.7
2,948,000	-		DDA3937_RS12915	0.63	-0.7
2,948,000	-		DDA3937_RS12915	0.63	-0.7
2,948,000	-		DDA3937_RS12915	0.63	-0.5
2,948,025	+		DDA3937_RS12915	0.65	-0.3
2,948,025	+		DDA3937_RS12915	0.65	-0.0
2,948,095	+		DDA3937_RS12915	0.71	-1.6
2,948,095	+		DDA3937_RS12915	0.71	+1.0
2,948,096	-		DDA3937_RS12915	0.71	-0.8
2,948,096	-		DDA3937_RS12915	0.71	-2.3
2,948,133	+		DDA3937_RS12915	0.74	-0.2
2,948,160	+		DDA3937_RS12915	0.76	+0.0
2,948,160	+		DDA3937_RS12915	0.76	-0.1
2,948,161	-		DDA3937_RS12915	0.77	+0.1
2,948,161	-		DDA3937_RS12915	0.77	-2.2
2,948,163	+		DDA3937_RS12915	0.77	+0.4
2,948,164	-		DDA3937_RS12915	0.77	-1.7
2,948,164	-		DDA3937_RS12915	0.77	-2.6
2,948,164	-		DDA3937_RS12915	0.77	-1.7
2,948,164	-		DDA3937_RS12915	0.77	+0.2
2,948,164	-		DDA3937_RS12915	0.77	-0.1
2,948,164	-		DDA3937_RS12915	0.77	-0.2
2,948,164	-		DDA3937_RS12915	0.77	-0.6
2,948,164	-		DDA3937_RS12915	0.77	-0.7
2,948,199	+		DDA3937_RS12915	0.80	-0.4
2,948,199	+		DDA3937_RS12915	0.80	+1.4
2,948,199	+		DDA3937_RS12915	0.80	-0.3
2,948,199	+		DDA3937_RS12915	0.80	-0.5
2,948,199	+		DDA3937_RS12915	0.80	-0.7
2,948,199	+		DDA3937_RS12915	0.80	-1.7
2,948,200	-		DDA3937_RS12915	0.80	-1.1
2,948,200	-		DDA3937_RS12915	0.80	+0.3
2,948,200	-		DDA3937_RS12915	0.80	-0.7
2,948,200	-		DDA3937_RS12915	0.80	-0.3
2,948,200	-		DDA3937_RS12915	0.80	-0.8
2,948,208	+		DDA3937_RS12915	0.81	-1.5
2,948,208	+		DDA3937_RS12915	0.81	-1.0
2,948,229	+		DDA3937_RS12915	0.82	-1.4
2,948,229	+		DDA3937_RS12915	0.82	+0.2
2,948,346	+				-0.2
2,948,350	+				+0.3
2,948,350	+				-1.0
2,948,437	+				-3.3
2,948,437	+				+1.4
2,948,437	+				+0.9
2,948,437	+				-0.7
2,948,437	+				-2.1
2,948,437	+				+0.3
2,948,437	+				-2.2
2,948,437	+				+1.2
2,948,437	+				+0.1
2,948,437	+				-3.0
2,948,437	+				+1.7
2,948,438	-				-0.4
2,948,438	-				-1.6
2,948,438	-				-1.7
2,948,438	-				+2.1
2,948,438	-				+3.6
2,948,438	-				+0.3
2,948,438	-				-1.7
2,948,438	-				-2.5
2,948,438	-				-1.6
2,948,445	-				+1.1
2,948,475	-				-1.6
2,948,494	+				-3.2
2,948,494	+				+0.6
2,948,494	+				-2.0
2,948,494	+				+0.4
2,948,495	-				+2.8
2,948,495	-				+0.0
2,948,495	-				+0.8
2,948,495	-				-0.2
2,948,562	-				-1.6
2,948,562	-				-1.6
2,948,562	-				+0.5
2,948,612	+		DDA3937_RS12920	0.13	+1.3
2,948,612	+		DDA3937_RS12920	0.13	-1.2
2,948,799	+		DDA3937_RS12920	0.42	-1.8
2,948,800	-		DDA3937_RS12920	0.42	-2.5
2,948,898	+				+0.0
2,949,114	+				+0.2
2,949,114	+				-1.4
2,949,114	+				-0.4
2,949,115	-				+1.6
2,949,115	-				-0.6
2,949,153	-				+0.6
2,949,160	+				-1.0
2,949,180	+				+0.4
2,949,289	+		DDA3937_RS12925	0.10	+0.0
2,949,289	+		DDA3937_RS12925	0.10	-1.5
2,949,289	+		DDA3937_RS12925	0.10	-1.5
2,949,289	+		DDA3937_RS12925	0.10	+0.5
2,949,388	+		DDA3937_RS12925	0.28	-0.4
2,949,389	-		DDA3937_RS12925	0.28	+2.8
2,949,389	-		DDA3937_RS12925	0.28	+1.0
2,949,389	-		DDA3937_RS12925	0.28	-2.0
2,949,389	-				+0.0
2,949,389	-		DDA3937_RS12925	0.28	+0.6
2,949,410	+		DDA3937_RS12925	0.32	-0.7