Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12600

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS12595 and DDA3937_RS22290 are separated by 174 nucleotidesDDA3937_RS22290 and DDA3937_RS12600 are separated by 264 nucleotidesDDA3937_RS12600 and DDA3937_RS12605 are separated by 141 nucleotidesDDA3937_RS12605 and DDA3937_RS12610 are separated by 109 nucleotides DDA3937_RS12595: DDA3937_RS12595 - transcriptional regulator SlyA, at 2,867,027 to 2,867,464 _RS12595 DDA3937_RS22290: DDA3937_RS22290 - DUF1289 domain-containing protein, at 2,867,639 to 2,867,878 _RS22290 DDA3937_RS12600: DDA3937_RS12600 - lactoylglutathione lyase, at 2,868,143 to 2,868,550 _RS12600 DDA3937_RS12605: DDA3937_RS12605 - ribonuclease T, at 2,868,692 to 2,869,369 _RS12605 DDA3937_RS12610: DDA3937_RS12610 - Grx4 family monothiol glutaredoxin, at 2,869,479 to 2,869,829 _RS12610 Position (kb) 2868 2869Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2867.147 kb on - strand, within DDA3937_RS12595at 2867.170 kb on + strand, within DDA3937_RS12595at 2867.170 kb on + strand, within DDA3937_RS12595at 2867.171 kb on - strand, within DDA3937_RS12595at 2867.171 kb on - strand, within DDA3937_RS12595at 2867.197 kb on + strand, within DDA3937_RS12595at 2867.197 kb on + strand, within DDA3937_RS12595at 2867.236 kb on + strand, within DDA3937_RS12595at 2867.236 kb on + strand, within DDA3937_RS12595at 2867.248 kb on + strand, within DDA3937_RS12595at 2867.249 kb on - strand, within DDA3937_RS12595at 2867.269 kb on + strand, within DDA3937_RS12595at 2867.269 kb on + strand, within DDA3937_RS12595at 2867.269 kb on + strand, within DDA3937_RS12595at 2867.270 kb on - strand, within DDA3937_RS12595at 2867.270 kb on - strand, within DDA3937_RS12595at 2867.291 kb on + strand, within DDA3937_RS12595at 2867.291 kb on + strand, within DDA3937_RS12595at 2867.291 kb on + strand, within DDA3937_RS12595at 2867.292 kb on - strand, within DDA3937_RS12595at 2867.292 kb on - strand, within DDA3937_RS12595at 2867.297 kb on + strand, within DDA3937_RS12595at 2867.347 kb on + strand, within DDA3937_RS12595at 2867.347 kb on + strand, within DDA3937_RS12595at 2867.350 kb on + strandat 2867.350 kb on + strandat 2867.350 kb on + strand, within DDA3937_RS12595at 2867.351 kb on - strand, within DDA3937_RS12595at 2867.351 kb on - strand, within DDA3937_RS12595at 2867.351 kb on - strand, within DDA3937_RS12595at 2867.351 kb on - strand, within DDA3937_RS12595at 2867.421 kb on - strandat 2867.553 kb on + strandat 2867.554 kb on - strandat 2867.554 kb on - strandat 2867.554 kb on - strandat 2867.559 kb on + strandat 2867.560 kb on - strandat 2867.568 kb on - strandat 2867.568 kb on - strandat 2867.568 kb on - strandat 2867.568 kb on - strandat 2867.613 kb on + strandat 2867.767 kb on + strand, within DDA3937_RS22290at 2867.767 kb on + strand, within DDA3937_RS22290at 2867.953 kb on + strandat 2867.953 kb on + strandat 2867.976 kb on + strandat 2867.976 kb on + strandat 2867.977 kb on - strandat 2868.054 kb on + strandat 2868.054 kb on + strandat 2868.056 kb on + strandat 2868.132 kb on + strandat 2868.132 kb on + strandat 2868.150 kb on + strandat 2868.151 kb on - strandat 2868.151 kb on - strandat 2868.157 kb on + strandat 2868.165 kb on + strandat 2868.338 kb on + strand, within DDA3937_RS12600at 2868.338 kb on + strand, within DDA3937_RS12600at 2868.338 kb on + strand, within DDA3937_RS12600at 2868.387 kb on + strand, within DDA3937_RS12600at 2868.388 kb on - strand, within DDA3937_RS12600at 2868.388 kb on - strand, within DDA3937_RS12600at 2868.407 kb on - strand, within DDA3937_RS12600at 2868.548 kb on + strandat 2868.548 kb on + strandat 2868.549 kb on - strandat 2868.549 kb on - strandat 2868.621 kb on + strandat 2868.655 kb on - strandat 2868.655 kb on - strandat 2868.671 kb on + strandat 2868.682 kb on + strandat 2868.682 kb on + strandat 2869.004 kb on - strand, within DDA3937_RS12605at 2869.367 kb on + strandat 2869.367 kb on + strandat 2869.368 kb on - strandat 2869.422 kb on + strandat 2869.422 kb on + strandat 2869.422 kb on + strandat 2869.422 kb on + strandat 2869.423 kb on - strandat 2869.435 kb on + strandat 2869.468 kb on - strandat 2869.480 kb on + strandat 2869.481 kb on - strandat 2869.481 kb on - strandat 2869.507 kb on + strandat 2869.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,867,147 - DDA3937_RS12595 0.27 +2.5
2,867,170 + DDA3937_RS12595 0.33 +3.6
2,867,170 + DDA3937_RS12595 0.33 +0.6
2,867,171 - DDA3937_RS12595 0.33 -0.4
2,867,171 - DDA3937_RS12595 0.33 +1.2
2,867,197 + DDA3937_RS12595 0.39 +0.6
2,867,197 + DDA3937_RS12595 0.39 +2.8
2,867,236 + DDA3937_RS12595 0.48 -0.0
2,867,236 + DDA3937_RS12595 0.48 -1.4
2,867,248 + DDA3937_RS12595 0.50 -1.0
2,867,249 - DDA3937_RS12595 0.51 -0.3
2,867,269 + DDA3937_RS12595 0.55 -1.2
2,867,269 + DDA3937_RS12595 0.55 -0.8
2,867,269 + DDA3937_RS12595 0.55 +2.8
2,867,270 - DDA3937_RS12595 0.55 -3.6
2,867,270 - DDA3937_RS12595 0.55 -2.5
2,867,291 + DDA3937_RS12595 0.60 -2.3
2,867,291 + DDA3937_RS12595 0.60 -1.8
2,867,291 + DDA3937_RS12595 0.60 +0.5
2,867,292 - DDA3937_RS12595 0.61 +2.4
2,867,292 - DDA3937_RS12595 0.61 -0.8
2,867,297 + DDA3937_RS12595 0.62 +0.6
2,867,347 + DDA3937_RS12595 0.73 -0.4
2,867,347 + DDA3937_RS12595 0.73 +0.3
2,867,350 + +0.6
2,867,350 + +3.7
2,867,350 + DDA3937_RS12595 0.74 -2.4
2,867,351 - DDA3937_RS12595 0.74 -1.8
2,867,351 - DDA3937_RS12595 0.74 -3.0
2,867,351 - DDA3937_RS12595 0.74 -2.2
2,867,351 - DDA3937_RS12595 0.74 +0.3
2,867,421 - +1.2
2,867,553 + -1.8
2,867,554 - +1.0
2,867,554 - -1.5
2,867,554 - -0.1
2,867,559 + -1.4
2,867,560 - -2.1
2,867,568 - -1.6
2,867,568 - -1.2
2,867,568 - -0.8
2,867,568 - +1.6
2,867,613 + -1.8
2,867,767 + DDA3937_RS22290 0.53 -0.4
2,867,767 + DDA3937_RS22290 0.53 -1.9
2,867,953 + -3.4
2,867,953 + -0.0
2,867,976 + +0.6
2,867,976 + +1.3
2,867,977 - +0.6
2,868,054 + -0.5
2,868,054 + -0.8
2,868,056 + -0.8
2,868,132 + -2.3
2,868,132 + -2.5
2,868,150 + -1.4
2,868,151 - -0.8
2,868,151 - -2.9
2,868,157 + -1.0
2,868,165 + +1.2
2,868,338 + DDA3937_RS12600 0.48 -1.4
2,868,338 + DDA3937_RS12600 0.48 -0.4
2,868,338 + DDA3937_RS12600 0.48 -1.7
2,868,387 + DDA3937_RS12600 0.60 -3.2
2,868,388 - DDA3937_RS12600 0.60 +0.5
2,868,388 - DDA3937_RS12600 0.60 -1.3
2,868,407 - DDA3937_RS12600 0.65 -3.2
2,868,548 + +0.6
2,868,548 + -1.6
2,868,549 - -0.8
2,868,549 - -1.2
2,868,621 + -1.2
2,868,655 - -1.2
2,868,655 - +0.9
2,868,671 + -0.7
2,868,682 + -0.4
2,868,682 + +0.2
2,869,004 - DDA3937_RS12605 0.46 -0.0
2,869,367 + -0.1
2,869,367 + -2.2
2,869,368 - -1.0
2,869,422 + +3.6
2,869,422 + -1.0
2,869,422 + -0.0
2,869,422 + +0.7
2,869,423 - +0.6
2,869,435 + -1.6
2,869,468 - -0.4
2,869,480 + -0.8
2,869,481 - +1.9
2,869,481 - +1.2
2,869,507 + -1.6
2,869,508 - -0.8

Or see this region's nucleotide sequence