Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS12595 and DDA3937_RS22290 are separated by 174 nucleotides DDA3937_RS22290 and DDA3937_RS12600 are separated by 264 nucleotides DDA3937_RS12600 and DDA3937_RS12605 are separated by 141 nucleotides DDA3937_RS12605 and DDA3937_RS12610 are separated by 109 nucleotides
DDA3937_RS12595: DDA3937_RS12595 - transcriptional regulator SlyA, at 2,867,027 to 2,867,464
_RS12595
DDA3937_RS22290: DDA3937_RS22290 - DUF1289 domain-containing protein, at 2,867,639 to 2,867,878
_RS22290
DDA3937_RS12600: DDA3937_RS12600 - lactoylglutathione lyase, at 2,868,143 to 2,868,550
_RS12600
DDA3937_RS12605: DDA3937_RS12605 - ribonuclease T, at 2,868,692 to 2,869,369
_RS12605
DDA3937_RS12610: DDA3937_RS12610 - Grx4 family monothiol glutaredoxin, at 2,869,479 to 2,869,829
_RS12610
Position (kb)
2868
2869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2867.147 kb on - strand, within DDA3937_RS12595 at 2867.170 kb on + strand, within DDA3937_RS12595 at 2867.170 kb on + strand, within DDA3937_RS12595 at 2867.171 kb on - strand, within DDA3937_RS12595 at 2867.171 kb on - strand, within DDA3937_RS12595 at 2867.197 kb on + strand, within DDA3937_RS12595 at 2867.197 kb on + strand, within DDA3937_RS12595 at 2867.236 kb on + strand, within DDA3937_RS12595 at 2867.236 kb on + strand, within DDA3937_RS12595 at 2867.248 kb on + strand, within DDA3937_RS12595 at 2867.249 kb on - strand, within DDA3937_RS12595 at 2867.269 kb on + strand, within DDA3937_RS12595 at 2867.269 kb on + strand, within DDA3937_RS12595 at 2867.269 kb on + strand, within DDA3937_RS12595 at 2867.270 kb on - strand, within DDA3937_RS12595 at 2867.270 kb on - strand, within DDA3937_RS12595 at 2867.291 kb on + strand, within DDA3937_RS12595 at 2867.291 kb on + strand, within DDA3937_RS12595 at 2867.291 kb on + strand, within DDA3937_RS12595 at 2867.292 kb on - strand, within DDA3937_RS12595 at 2867.292 kb on - strand, within DDA3937_RS12595 at 2867.297 kb on + strand, within DDA3937_RS12595 at 2867.347 kb on + strand, within DDA3937_RS12595 at 2867.347 kb on + strand, within DDA3937_RS12595 at 2867.350 kb on + strand at 2867.350 kb on + strand at 2867.350 kb on + strand, within DDA3937_RS12595 at 2867.351 kb on - strand, within DDA3937_RS12595 at 2867.351 kb on - strand, within DDA3937_RS12595 at 2867.351 kb on - strand, within DDA3937_RS12595 at 2867.351 kb on - strand, within DDA3937_RS12595 at 2867.421 kb on - strand at 2867.553 kb on + strand at 2867.554 kb on - strand at 2867.554 kb on - strand at 2867.554 kb on - strand at 2867.559 kb on + strand at 2867.560 kb on - strand at 2867.568 kb on - strand at 2867.568 kb on - strand at 2867.568 kb on - strand at 2867.568 kb on - strand at 2867.613 kb on + strand at 2867.767 kb on + strand, within DDA3937_RS22290 at 2867.767 kb on + strand, within DDA3937_RS22290 at 2867.953 kb on + strand at 2867.953 kb on + strand at 2867.976 kb on + strand at 2867.976 kb on + strand at 2867.977 kb on - strand at 2868.054 kb on + strand at 2868.054 kb on + strand at 2868.056 kb on + strand at 2868.132 kb on + strand at 2868.132 kb on + strand at 2868.150 kb on + strand at 2868.151 kb on - strand at 2868.151 kb on - strand at 2868.157 kb on + strand at 2868.165 kb on + strand at 2868.338 kb on + strand, within DDA3937_RS12600 at 2868.338 kb on + strand, within DDA3937_RS12600 at 2868.338 kb on + strand, within DDA3937_RS12600 at 2868.387 kb on + strand, within DDA3937_RS12600 at 2868.388 kb on - strand, within DDA3937_RS12600 at 2868.388 kb on - strand, within DDA3937_RS12600 at 2868.407 kb on - strand, within DDA3937_RS12600 at 2868.548 kb on + strand at 2868.548 kb on + strand at 2868.549 kb on - strand at 2868.549 kb on - strand at 2868.621 kb on + strand at 2868.655 kb on - strand at 2868.655 kb on - strand at 2868.671 kb on + strand at 2868.682 kb on + strand at 2868.682 kb on + strand at 2869.004 kb on - strand, within DDA3937_RS12605 at 2869.367 kb on + strand at 2869.367 kb on + strand at 2869.368 kb on - strand at 2869.422 kb on + strand at 2869.422 kb on + strand at 2869.422 kb on + strand at 2869.422 kb on + strand at 2869.423 kb on - strand at 2869.435 kb on + strand at 2869.468 kb on - strand at 2869.480 kb on + strand at 2869.481 kb on - strand at 2869.481 kb on - strand at 2869.507 kb on + strand at 2869.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,867,147 - DDA3937_RS12595 0.27 +2.5 2,867,170 + DDA3937_RS12595 0.33 +3.6 2,867,170 + DDA3937_RS12595 0.33 +0.6 2,867,171 - DDA3937_RS12595 0.33 -0.4 2,867,171 - DDA3937_RS12595 0.33 +1.2 2,867,197 + DDA3937_RS12595 0.39 +0.6 2,867,197 + DDA3937_RS12595 0.39 +2.8 2,867,236 + DDA3937_RS12595 0.48 -0.0 2,867,236 + DDA3937_RS12595 0.48 -1.4 2,867,248 + DDA3937_RS12595 0.50 -1.0 2,867,249 - DDA3937_RS12595 0.51 -0.3 2,867,269 + DDA3937_RS12595 0.55 -1.2 2,867,269 + DDA3937_RS12595 0.55 -0.8 2,867,269 + DDA3937_RS12595 0.55 +2.8 2,867,270 - DDA3937_RS12595 0.55 -3.6 2,867,270 - DDA3937_RS12595 0.55 -2.5 2,867,291 + DDA3937_RS12595 0.60 -2.3 2,867,291 + DDA3937_RS12595 0.60 -1.8 2,867,291 + DDA3937_RS12595 0.60 +0.5 2,867,292 - DDA3937_RS12595 0.61 +2.4 2,867,292 - DDA3937_RS12595 0.61 -0.8 2,867,297 + DDA3937_RS12595 0.62 +0.6 2,867,347 + DDA3937_RS12595 0.73 -0.4 2,867,347 + DDA3937_RS12595 0.73 +0.3 2,867,350 + +0.6 2,867,350 + +3.7 2,867,350 + DDA3937_RS12595 0.74 -2.4 2,867,351 - DDA3937_RS12595 0.74 -1.8 2,867,351 - DDA3937_RS12595 0.74 -3.0 2,867,351 - DDA3937_RS12595 0.74 -2.2 2,867,351 - DDA3937_RS12595 0.74 +0.3 2,867,421 - +1.2 2,867,553 + -1.8 2,867,554 - +1.0 2,867,554 - -1.5 2,867,554 - -0.1 2,867,559 + -1.4 2,867,560 - -2.1 2,867,568 - -1.6 2,867,568 - -1.2 2,867,568 - -0.8 2,867,568 - +1.6 2,867,613 + -1.8 2,867,767 + DDA3937_RS22290 0.53 -0.4 2,867,767 + DDA3937_RS22290 0.53 -1.9 2,867,953 + -3.4 2,867,953 + -0.0 2,867,976 + +0.6 2,867,976 + +1.3 2,867,977 - +0.6 2,868,054 + -0.5 2,868,054 + -0.8 2,868,056 + -0.8 2,868,132 + -2.3 2,868,132 + -2.5 2,868,150 + -1.4 2,868,151 - -0.8 2,868,151 - -2.9 2,868,157 + -1.0 2,868,165 + +1.2 2,868,338 + DDA3937_RS12600 0.48 -1.4 2,868,338 + DDA3937_RS12600 0.48 -0.4 2,868,338 + DDA3937_RS12600 0.48 -1.7 2,868,387 + DDA3937_RS12600 0.60 -3.2 2,868,388 - DDA3937_RS12600 0.60 +0.5 2,868,388 - DDA3937_RS12600 0.60 -1.3 2,868,407 - DDA3937_RS12600 0.65 -3.2 2,868,548 + +0.6 2,868,548 + -1.6 2,868,549 - -0.8 2,868,549 - -1.2 2,868,621 + -1.2 2,868,655 - -1.2 2,868,655 - +0.9 2,868,671 + -0.7 2,868,682 + -0.4 2,868,682 + +0.2 2,869,004 - DDA3937_RS12605 0.46 -0.0 2,869,367 + -0.1 2,869,367 + -2.2 2,869,368 - -1.0 2,869,422 + +3.6 2,869,422 + -1.0 2,869,422 + -0.0 2,869,422 + +0.7 2,869,423 - +0.6 2,869,435 + -1.6 2,869,468 - -0.4 2,869,480 + -0.8 2,869,481 - +1.9 2,869,481 - +1.2 2,869,507 + -1.6 2,869,508 - -0.8
Or see this region's nucleotide sequence