Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12490

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,841,372	-				+1.7
2,841,372	-				+2.1
2,841,430	-				-1.0
2,841,430	-				+0.7
2,841,435	+				+0.1
2,841,435	+				+1.0
2,841,435	+				+1.9
2,841,436	-				+1.9
2,841,436	-				+0.3
2,841,436	-				-1.0
2,841,470	+				-0.0
2,841,477	+				-1.8
2,841,477	+				-2.3
2,841,508	+				-1.8
2,841,508	+				-0.2
2,841,523	+				+2.1
2,841,523	+				-0.4
2,841,744	+				-0.4
2,841,815	-		DDA3937_RS12485	0.15	-1.9
2,841,834	+		DDA3937_RS12485	0.19	+1.0
2,841,856	+		DDA3937_RS12485	0.23	-0.8
2,841,857	-		DDA3937_RS12485	0.23	-2.1
2,841,857	-				-0.4
2,841,933	-		DDA3937_RS12485	0.39	-2.5
2,841,940	+		DDA3937_RS12485	0.41	-1.2
2,841,941	-		DDA3937_RS12485	0.41	+0.7
2,841,950	-		DDA3937_RS12485	0.43	-1.4
2,842,075	+		DDA3937_RS12485	0.69	+1.6
2,842,075	+		DDA3937_RS12485	0.69	+2.6
2,842,084	+		DDA3937_RS12485	0.71	+3.9
2,842,084	+		DDA3937_RS12485	0.71	-2.7
2,842,085	-		DDA3937_RS12485	0.72	-2.4
2,842,085	-		DDA3937_RS12485	0.72	-1.2
2,842,085	-		DDA3937_RS12485	0.72	-0.7
2,842,085	-		DDA3937_RS12485	0.72	-0.4
2,842,089	+		DDA3937_RS12485	0.72	-1.3
2,842,089	+		DDA3937_RS12485	0.72	-0.8
2,842,089	+		DDA3937_RS12485	0.72	+0.3
2,842,089	+		DDA3937_RS12485	0.72	-2.5
2,842,128	+		DDA3937_RS12485	0.81	-0.6
2,842,128	+		DDA3937_RS12485	0.81	+2.6
2,842,128	+		DDA3937_RS12485	0.81	+1.8
2,842,128	+		DDA3937_RS12485	0.81	+2.0
2,842,128	+		DDA3937_RS12485	0.81	-1.0
2,842,129	-		DDA3937_RS12485	0.81	-1.9
2,842,129	-		DDA3937_RS12485	0.81	+0.1
2,842,129	-		DDA3937_RS12485	0.81	-0.6
2,842,129	-		DDA3937_RS12485	0.81	+0.6
2,842,129	-		DDA3937_RS12485	0.81	+0.3
2,842,129	-		DDA3937_RS12485	0.81	+0.3
2,842,144	-		DDA3937_RS12485	0.84	-0.4
2,842,158	+		DDA3937_RS12485	0.87	-4.8
2,842,272	+				-2.6
2,842,272	+				+1.3
2,842,339	+				-0.8
2,842,340	-				-4.3
2,842,340	-				-1.0
2,842,340	-				-3.5
2,842,361	+				+0.2
2,842,361	+				-0.4
2,842,362	-				-3.0
2,842,394	+				-3.2
2,842,395	-				-2.3
2,842,438	+				-1.3
2,842,439	-				+0.3
2,842,439	-				-0.0
2,842,439	-				-1.6
2,842,439	-				-1.7
2,842,491	+				-0.8
2,842,491	+				-0.3
2,842,491	+				-1.7
2,842,491	+				-1.9
2,842,491	+				-1.8
2,842,491	+				-2.4
2,842,491	+				+0.6
2,842,491	+				-1.3
2,842,492	-				-2.6
2,842,492	-				-2.9
2,842,539	-				-1.7
2,842,631	-		DDA3937_RS12490	0.14	-2.0
2,842,727	+		DDA3937_RS12490	0.19	-2.5
2,842,809	+		DDA3937_RS12490	0.23	-0.5
2,842,809	+		DDA3937_RS12490	0.23	-3.3
2,842,809	+		DDA3937_RS12490	0.23	+0.6
2,842,809	+		DDA3937_RS12490	0.23	-2.2
2,842,809	+		DDA3937_RS12490	0.23	-1.6
2,842,809	+		DDA3937_RS12490	0.23	-2.1
2,842,809	+		DDA3937_RS12490	0.23	-3.7
2,842,809	+		DDA3937_RS12490	0.23	-3.0
2,842,809	+		DDA3937_RS12490	0.23	-2.3
2,842,809	+		DDA3937_RS12490	0.23	+0.6
2,842,809	+		DDA3937_RS12490	0.23	-2.1
2,842,809	+		DDA3937_RS12490	0.23	-2.7
2,842,809	+		DDA3937_RS12490	0.23	-1.2
2,842,809	+		DDA3937_RS12490	0.23	-3.6
2,842,810	-		DDA3937_RS12490	0.23	-3.5
2,842,810	-		DDA3937_RS12490	0.23	-0.8
2,842,810	-		DDA3937_RS12490	0.23	-1.8
2,842,810	-		DDA3937_RS12490	0.23	-3.6
2,842,866	-		DDA3937_RS12490	0.26	-0.8
2,842,982	+		DDA3937_RS12490	0.32	-2.2
2,842,982	+		DDA3937_RS12490	0.32	-0.4
2,842,982	+		DDA3937_RS12490	0.32	-2.6
2,842,982	+		DDA3937_RS12490	0.32	-2.0
2,842,982	+		DDA3937_RS12490	0.32	-3.5
2,842,983	-		DDA3937_RS12490	0.32	-1.2
2,842,998	+		DDA3937_RS12490	0.33	-2.2
2,842,998	+		DDA3937_RS12490	0.33	-1.1
2,842,998	+		DDA3937_RS12490	0.33	-2.2
2,842,998	+		DDA3937_RS12490	0.33	-2.2
2,842,998	+		DDA3937_RS12490	0.33	-2.0
2,842,998	+		DDA3937_RS12490	0.33	-1.2
2,842,998	+		DDA3937_RS12490	0.33	-2.5
2,842,998	+		DDA3937_RS12490	0.33	-1.0
2,842,999	-		DDA3937_RS12490	0.33	-3.3
2,842,999	-		DDA3937_RS12490	0.33	-2.0
2,842,999	-		DDA3937_RS12490	0.33	-3.1
2,842,999	-		DDA3937_RS12490	0.33	-2.4
2,842,999	-		DDA3937_RS12490	0.33	+0.7
2,842,999	-		DDA3937_RS12490	0.33	+0.3
2,843,061	+		DDA3937_RS12490	0.36	-1.2
2,843,061	+		DDA3937_RS12490	0.36	-3.0
2,843,062	-		DDA3937_RS12490	0.36	-4.2
2,843,062	-		DDA3937_RS12490	0.36	+1.3
2,843,062	-		DDA3937_RS12490	0.36	-2.2
2,843,065	+		DDA3937_RS12490	0.36	-2.0
2,843,065	+		DDA3937_RS12490	0.36	-4.4
2,843,065	+		DDA3937_RS12490	0.36	-4.8
2,843,065	+		DDA3937_RS12490	0.36	-4.1
2,843,065	+		DDA3937_RS12490	0.36	-4.6
2,843,066	-		DDA3937_RS12490	0.36	+0.6
2,843,066	-		DDA3937_RS12490	0.36	+0.4
2,843,118	+		DDA3937_RS12490	0.39	-0.9
2,843,118	+		DDA3937_RS12490	0.39	-3.0
2,843,118	+				-0.0
2,843,118	+		DDA3937_RS12490	0.39	-2.5
2,843,118	+		DDA3937_RS12490	0.39	-4.2
2,843,118	+		DDA3937_RS12490	0.39	-1.4
2,843,118	+		DDA3937_RS12490	0.39	+0.2
2,843,119	-		DDA3937_RS12490	0.39	-1.1
2,843,119	-		DDA3937_RS12490	0.39	-1.9
2,843,119	-		DDA3937_RS12490	0.39	-0.6
2,843,119	-		DDA3937_RS12490	0.39	-0.9
2,843,119	-		DDA3937_RS12490	0.39	-1.0
2,843,119	-		DDA3937_RS12490	0.39	-2.8
2,843,119	-		DDA3937_RS12490	0.39	-1.3
2,843,119	-		DDA3937_RS12490	0.39	-0.6
2,843,135	+		DDA3937_RS12490	0.40	-2.9
2,843,136	-		DDA3937_RS12490	0.40	+0.8
2,843,136	-		DDA3937_RS12490	0.40	-1.8
2,843,169	-		DDA3937_RS12490	0.42	-1.4
2,843,169	-		DDA3937_RS12490	0.42	-2.3
2,843,295	+		DDA3937_RS12490	0.48	-2.0
2,843,295	+		DDA3937_RS12490	0.48	+1.7
2,843,295	+		DDA3937_RS12490	0.48	-2.0
2,843,296	-		DDA3937_RS12490	0.48	-2.0
2,843,296	-		DDA3937_RS12490	0.48	-3.1
2,843,296	-		DDA3937_RS12490	0.48	-2.7
2,843,296	-		DDA3937_RS12490	0.48	-0.5
2,843,309	+		DDA3937_RS12490	0.49	-1.8
2,843,309	+		DDA3937_RS12490	0.49	-3.2
2,843,309	+		DDA3937_RS12490	0.49	-0.4
2,843,309	+		DDA3937_RS12490	0.49	+0.0
2,843,310	-		DDA3937_RS12490	0.49	-0.9
2,843,310	-		DDA3937_RS12490	0.49	-0.6
2,843,310	-		DDA3937_RS12490	0.49	-0.2
2,843,355	-		DDA3937_RS12490	0.51	-2.3
2,843,355	-		DDA3937_RS12490	0.51	+3.5
2,843,411	+		DDA3937_RS12490	0.54	-0.8
2,843,411	+		DDA3937_RS12490	0.54	-1.6
2,843,411	+		DDA3937_RS12490	0.54	+0.0
2,843,411	+		DDA3937_RS12490	0.54	-1.0
2,843,412	-		DDA3937_RS12490	0.54	-2.4
2,843,412	-		DDA3937_RS12490	0.54	-1.9
2,843,412	-		DDA3937_RS12490	0.54	-3.1
2,843,412	-		DDA3937_RS12490	0.54	-1.2
2,843,412	-		DDA3937_RS12490	0.54	+0.0
2,843,414	+		DDA3937_RS12490	0.54	-0.4
2,843,414	+		DDA3937_RS12490	0.54	-2.0
2,843,567	-		DDA3937_RS12490	0.62	-2.3
2,843,595	+		DDA3937_RS12490	0.64	-2.1
2,843,595	+		DDA3937_RS12490	0.64	-1.2
2,843,595	+		DDA3937_RS12490	0.64	-1.1
2,843,595	+		DDA3937_RS12490	0.64	+1.0
2,843,595	+		DDA3937_RS12490	0.64	-1.0
2,843,595	+		DDA3937_RS12490	0.64	+1.2
2,843,596	-		DDA3937_RS12490	0.64	-1.2
2,843,596	-		DDA3937_RS12490	0.64	+1.0
2,843,596	-		DDA3937_RS12490	0.64	-2.5
2,843,596	-		DDA3937_RS12490	0.64	-1.0
2,843,664	-		DDA3937_RS12490	0.67	-2.5
2,843,664	-		DDA3937_RS12490	0.67	-3.2
2,843,832	+		DDA3937_RS12490	0.76	-4.3
2,843,832	+		DDA3937_RS12490	0.76	-0.3
2,843,832	+		DDA3937_RS12490	0.76	-0.7
2,843,833	-		DDA3937_RS12490	0.76	-1.9
2,843,858	+		DDA3937_RS12490	0.77	-2.2
2,843,858	+		DDA3937_RS12490	0.77	-3.9
2,843,858	+		DDA3937_RS12490	0.77	-1.1
2,843,859	-		DDA3937_RS12490	0.77	-2.0
2,843,862	+		DDA3937_RS12490	0.78	-0.2
2,843,863	-		DDA3937_RS12490	0.78	-2.2
2,843,863	-		DDA3937_RS12490	0.78	-0.0
2,843,903	+		DDA3937_RS12490	0.80	-1.0
2,843,903	+		DDA3937_RS12490	0.80	+2.1
2,843,903	+		DDA3937_RS12490	0.80	-2.9
2,843,903	+		DDA3937_RS12490	0.80	-2.7
2,843,904	-		DDA3937_RS12490	0.80	-4.5
2,844,006	+		DDA3937_RS12490	0.85	-2.4
2,844,006	+		DDA3937_RS12490	0.85	-1.0
2,844,007	-		DDA3937_RS12490	0.85	-0.2
2,844,007	-		DDA3937_RS12490	0.85	-0.9
2,844,007	-		DDA3937_RS12490	0.85	-2.2
2,844,026	+		DDA3937_RS12490	0.86	-1.2
2,844,027	-		DDA3937_RS12490	0.86	-0.0
2,844,027	-		DDA3937_RS12490	0.86	-3.3
2,844,027	-		DDA3937_RS12490	0.86	-1.8
2,844,027	-		DDA3937_RS12490	0.86	-1.7
2,844,062	+		DDA3937_RS12490	0.88	-3.7
2,844,062	+		DDA3937_RS12490	0.88	-1.2
2,844,062	+		DDA3937_RS12490	0.88	-1.8
2,844,122	+				-2.0
2,844,365	-				+0.1
2,844,365	-				+1.2
2,844,365	-				-2.4
2,844,456	+				-0.0
2,844,456	+				+0.2
2,844,456	+				-3.3
2,844,456	+				-0.2
2,844,457	-				-0.9
2,844,457	-				+0.1
2,844,471	+				+1.6
2,844,500	+		DDA3937_RS12495	0.11	-1.6
2,844,501	-		DDA3937_RS12495	0.11	-0.0
2,844,501	-		DDA3937_RS12495	0.11	-3.0
2,844,550	+		DDA3937_RS12495	0.17	-0.2
2,844,724	+				-0.8
2,844,724	+		DDA3937_RS12495	0.36	+0.6
2,844,725	-		DDA3937_RS12495	0.36	-1.2
2,844,851	+		DDA3937_RS12495	0.49	-2.3
2,845,003	+				+0.6
2,845,004	-		DDA3937_RS12495	0.66	-1.8
2,845,051	+		DDA3937_RS12495	0.71	-1.0
2,845,210	-		DDA3937_RS12495	0.89	-0.2
2,845,258	-				-2.4