Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12095

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,748,551	+		DDA3937_RS12085	0.52	-2.3
2,748,552	-		DDA3937_RS12085	0.52	-3.4
2,748,595	+		DDA3937_RS12085	0.60	+1.7
2,748,616	+		DDA3937_RS12085	0.63	-0.8
2,748,616	+		DDA3937_RS12085	0.63	-1.9
2,748,617	-		DDA3937_RS12085	0.63	-3.9
2,748,677	-		DDA3937_RS12085	0.74	-1.1
2,748,739	+		DDA3937_RS12085	0.85	-1.4
2,748,739	+		DDA3937_RS12085	0.85	-2.8
2,748,740	-		DDA3937_RS12085	0.85	+0.1
2,748,755	-		DDA3937_RS12085	0.88	-0.5
2,748,840	-				-1.6
2,748,856	+				-1.3
2,748,856	+				-2.2
2,748,857	-				+1.3
2,748,859	+				+1.8
2,748,859	+				-0.1
2,748,859	+				+2.4
2,748,859	+				-2.1
2,748,859	+				-2.2
2,748,860	-				+0.8
2,748,860	-				+0.5
2,748,860	-				-2.1
2,748,871	-				-2.2
2,748,880	+				-1.6
2,748,881	-				-1.5
2,748,902	+				+1.0
2,748,903	-				-0.5
2,748,903	-				+2.3
2,748,903	-				-2.3
2,748,939	-				+1.5
2,748,945	+				-0.8
2,748,945	+				-0.4
2,748,948	-				+0.2
2,748,948	-				-1.6
2,748,948	-				-0.2
2,748,948	-				+1.3
2,748,977	-				+1.9
2,748,988	+				+0.2
2,749,007	+				-1.1
2,749,007	+				-0.5
2,749,008	-				+0.3
2,749,008	-				-2.9
2,749,039	+				+1.7
2,749,040	-				+1.0
2,749,041	+				+0.8
2,749,041	+				-1.1
2,749,041	+				-1.8
2,749,041	+				+1.2
2,749,041	+				-2.1
2,749,041	+				+0.8
2,749,041	+				+0.8
2,749,042	-				-0.9
2,749,042	-				+1.1
2,749,042	-				+0.5
2,749,042	-				+1.5
2,749,042	-				+0.4
2,749,042	-				-0.8
2,749,046	-				-0.8
2,749,046	-				-1.1
2,749,046	-				-1.3
2,749,093	+		DDA3937_RS12090	0.15	-0.5
2,749,101	+		DDA3937_RS12090	0.16	-0.6
2,749,101	+		DDA3937_RS12090	0.16	-2.3
2,749,101	+		DDA3937_RS12090	0.16	-0.8
2,749,102	-		DDA3937_RS12090	0.16	-2.8
2,749,102	-		DDA3937_RS12090	0.16	+1.4
2,749,102	-		DDA3937_RS12090	0.16	+1.2
2,749,102	-		DDA3937_RS12090	0.16	+0.7
2,749,102	-		DDA3937_RS12090	0.16	-1.5
2,749,102	-		DDA3937_RS12090	0.16	+0.2
2,749,105	+		DDA3937_RS12090	0.17	+0.7
2,749,105	+		DDA3937_RS12090	0.17	+0.6
2,749,105	+		DDA3937_RS12090	0.17	-1.6
2,749,105	+		DDA3937_RS12090	0.17	-2.6
2,749,105	+		DDA3937_RS12090	0.17	-1.1
2,749,105	+		DDA3937_RS12090	0.17	-1.4
2,749,106	-		DDA3937_RS12090	0.17	-0.6
2,749,106	-		DDA3937_RS12090	0.17	+2.5
2,749,106	-		DDA3937_RS12090	0.17	-1.3
2,749,106	-		DDA3937_RS12090	0.17	+1.8
2,749,106	-		DDA3937_RS12090	0.17	-0.8
2,749,106	-		DDA3937_RS12090	0.17	-2.2
2,749,106	-		DDA3937_RS12090	0.17	-3.7
2,749,106	-		DDA3937_RS12090	0.17	+2.1
2,749,106	-		DDA3937_RS12090	0.17	+0.9
2,749,106	-		DDA3937_RS12090	0.17	-1.2
2,749,106	-		DDA3937_RS12090	0.17	-1.1
2,749,106	-		DDA3937_RS12090	0.17	-1.2
2,749,106	-		DDA3937_RS12090	0.17	+0.8
2,749,106	-		DDA3937_RS12090	0.17	-0.5
2,749,106	-		DDA3937_RS12090	0.17	-0.1
2,749,163	-		DDA3937_RS12090	0.29	+2.7
2,749,163	-		DDA3937_RS12090	0.29	-1.5
2,749,163	-		DDA3937_RS12090	0.29	-0.6
2,749,195	-		DDA3937_RS12090	0.36	-1.3
2,749,298	-		DDA3937_RS12090	0.57	-0.2
2,749,499	+				-2.2
2,749,500	-				-2.2
2,749,503	+				-0.8
2,749,503	+				-0.6
2,749,504	-				-4.0
2,749,504	-				-1.5
2,749,504	-				-1.2
2,749,504	-				+0.7
2,749,526	+				+0.2
2,749,527	-				+1.7
2,749,538	-				-0.6
2,749,710	+		DDA3937_RS12095	0.31	-2.5
2,749,711	-		DDA3937_RS12095	0.31	-1.3
2,749,754	-		DDA3937_RS12095	0.39	+1.5
2,749,816	+		DDA3937_RS12095	0.50	-1.8
2,749,817	-		DDA3937_RS12095	0.50	-1.1
2,750,058	-				-1.8
2,750,059	+				-2.1
2,750,095	-				-1.3
2,750,174	+				-0.5
2,750,174	+				-2.7
2,750,175	-				+1.9
2,750,195	-				+0.4
2,750,234	+				-1.3
2,750,235	-				-0.1
2,750,235	-				-0.7
2,750,247	+				-1.7
2,750,248	-				+3.0
2,750,248	-				-2.2
2,750,248	-				-0.6
2,750,248	-				-3.1
2,750,248	-				+1.2
2,750,341	+				+0.5
2,750,349	-		DDA3937_RS12100	0.11	+0.6
2,750,404	+		DDA3937_RS12100	0.19	-3.0
2,750,404	+		DDA3937_RS12100	0.19	+0.9
2,750,405	-		DDA3937_RS12100	0.19	-1.5
2,750,438	-		DDA3937_RS12100	0.24	-2.5
2,750,443	+		DDA3937_RS12100	0.25	-1.6
2,750,500	-		DDA3937_RS12100	0.33	-0.1
2,750,559	-		DDA3937_RS12100	0.41	-2.1
2,750,559	-		DDA3937_RS12100	0.41	-1.0
2,750,641	+		DDA3937_RS12100	0.53	+2.7
2,750,642	-		DDA3937_RS12100	0.53	+0.8
2,750,644	+		DDA3937_RS12100	0.54	-1.8
2,750,645	-		DDA3937_RS12100	0.54	+0.9
2,750,664	+		DDA3937_RS12100	0.56	-0.5
2,750,711	+		DDA3937_RS12100	0.63	+0.5
2,750,711	+		DDA3937_RS12100	0.63	-0.7
2,750,743	-		DDA3937_RS12100	0.68	-1.1
2,750,743	-		DDA3937_RS12100	0.68	+1.0
2,750,743	-		DDA3937_RS12100	0.68	+1.1
2,750,743	-		DDA3937_RS12100	0.68	+2.1
2,750,743	-				-0.1
2,750,744	+		DDA3937_RS12100	0.68	+0.7
2,750,746	+		DDA3937_RS12100	0.68	-2.6
2,750,747	-		DDA3937_RS12100	0.68	-2.1
2,750,747	-		DDA3937_RS12100	0.68	+1.2
2,750,747	-		DDA3937_RS12100	0.68	+0.1
2,750,805	+				-1.3
2,750,806	-		DDA3937_RS12100	0.77	-0.5
2,750,811	-		DDA3937_RS12100	0.78	+0.8
2,750,865	-		DDA3937_RS12100	0.85	-2.1
2,750,879	+		DDA3937_RS12100	0.87	-2.3
2,750,879	+		DDA3937_RS12100	0.87	-0.2
2,750,879	+		DDA3937_RS12100	0.87	-1.9
2,750,879	+		DDA3937_RS12100	0.87	+1.5
2,750,880	-		DDA3937_RS12100	0.88	-0.8
2,750,881	+		DDA3937_RS12100	0.88	-0.1
2,750,882	-		DDA3937_RS12100	0.88	-2.5
2,750,884	+		DDA3937_RS12100	0.88	+0.1
2,750,884	+		DDA3937_RS12100	0.88	-2.2
2,750,884	+		DDA3937_RS12100	0.88	+0.2
2,750,885	-		DDA3937_RS12100	0.88	-0.4
2,750,945	+				-1.6
2,750,945	+				-2.7
2,750,945	+				+2.9
2,750,945	+				+1.9
2,750,946	-				-1.7
2,750,946	-				+1.4
2,750,946	-				-0.1
2,750,946	-				-2.6
2,751,001	-				-0.5
2,751,031	+		DDA3937_RS12105	0.10	-1.5
2,751,031	+		DDA3937_RS12105	0.10	-1.5
2,751,036	+		DDA3937_RS12105	0.11	-0.7
2,751,036	+		DDA3937_RS12105	0.11	-1.1
2,751,037	-		DDA3937_RS12105	0.11	-2.6
2,751,043	+		DDA3937_RS12105	0.12	+1.0
2,751,048	+		DDA3937_RS12105	0.13	-2.8
2,751,070	+		DDA3937_RS12105	0.17	+0.8
2,751,070	+		DDA3937_RS12105	0.17	-1.9
2,751,071	-		DDA3937_RS12105	0.17	-2.6
2,751,071	-		DDA3937_RS12105	0.17	-2.3
2,751,071	-		DDA3937_RS12105	0.17	-1.1
2,751,071	-		DDA3937_RS12105	0.17	-0.1
2,751,071	-		DDA3937_RS12105	0.17	+1.3
2,751,071	-		DDA3937_RS12105	0.17	+3.2
2,751,073	-		DDA3937_RS12105	0.17	-1.5
2,751,073	-		DDA3937_RS12105	0.17	-2.7
2,751,073	-				+1.5
2,751,078	+		DDA3937_RS12105	0.18	-1.5
2,751,079	-		DDA3937_RS12105	0.18	-1.3
2,751,091	+		DDA3937_RS12105	0.20	-2.1