Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11965

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,719,638	-		DDA3937_RS11960	0.23	-2.7
2,719,655	+		DDA3937_RS11960	0.25	-2.3
2,719,656	-		DDA3937_RS11960	0.25	-1.9
2,719,713	+		DDA3937_RS11960	0.30	-3.1
2,719,713	+		DDA3937_RS11960	0.30	+2.7
2,719,713	+		DDA3937_RS11960	0.30	-0.5
2,719,714	-		DDA3937_RS11960	0.31	-1.6
2,719,714	-		DDA3937_RS11960	0.31	-1.3
2,719,714	-		DDA3937_RS11960	0.31	-0.8
2,719,714	-		DDA3937_RS11960	0.31	-1.3
2,719,714	-		DDA3937_RS11960	0.31	-1.3
2,719,931	+		DDA3937_RS11960	0.51	+0.4
2,719,932	-		DDA3937_RS11960	0.51	+0.5
2,719,932	-		DDA3937_RS11960	0.51	-1.3
2,719,986	-		DDA3937_RS11960	0.56	-0.9
2,720,039	+		DDA3937_RS11960	0.61	-1.8
2,720,040	-		DDA3937_RS11960	0.61	-1.1
2,720,040	-		DDA3937_RS11960	0.61	-1.8
2,720,040	-		DDA3937_RS11960	0.61	-1.1
2,720,113	+		DDA3937_RS11960	0.68	-0.7
2,720,164	+		DDA3937_RS11960	0.73	-0.1
2,720,164	+		DDA3937_RS11960	0.73	-2.5
2,720,165	-		DDA3937_RS11960	0.73	+0.5
2,720,165	-		DDA3937_RS11960	0.73	-0.8
2,720,165	-		DDA3937_RS11960	0.73	-1.5
2,720,168	+		DDA3937_RS11960	0.74	+0.5
2,720,168	+		DDA3937_RS11960	0.74	+1.1
2,720,169	-		DDA3937_RS11960	0.74	+0.8
2,720,195	+		DDA3937_RS11960	0.76	+2.0
2,720,195	+		DDA3937_RS11960	0.76	+2.8
2,720,219	+		DDA3937_RS11960	0.78	+1.4
2,720,219	+		DDA3937_RS11960	0.78	+2.0
2,720,219	+		DDA3937_RS11960	0.78	+1.1
2,720,220	-		DDA3937_RS11960	0.79	+1.8
2,720,220	-		DDA3937_RS11960	0.79	+0.7
2,720,220	-		DDA3937_RS11960	0.79	-1.6
2,720,239	+				+0.5
2,720,240	-		DDA3937_RS11960	0.80	+2.8
2,720,303	+		DDA3937_RS11960	0.86	+0.8
2,720,491	+				+0.3
2,720,491	+				+2.1
2,720,492	-				-0.2
2,720,499	+				+2.4
2,720,500	-				+0.1
2,720,510	+				+1.0
2,720,511	-				-1.3
2,720,511	-				-1.9
2,720,512	+				-1.3
2,720,512	+				+2.1
2,720,528	-				-0.1
2,720,578	+				-3.9
2,720,657	+				-1.1
2,720,658	-				-2.3
2,720,758	-				-2.6
2,720,806	+		DDA3937_RS11965	0.10	-2.6
2,720,806	+		DDA3937_RS11965	0.10	-1.5
2,720,807	-		DDA3937_RS11965	0.10	-1.9
2,720,807	-		DDA3937_RS11965	0.10	-0.1
2,720,807	-		DDA3937_RS11965	0.10	-4.5
2,720,815	-		DDA3937_RS11965	0.11	-1.1
2,720,820	+		DDA3937_RS11965	0.11	-3.5
2,720,820	+		DDA3937_RS11965	0.11	-0.5
2,720,820	+		DDA3937_RS11965	0.11	-2.4
2,720,838	-		DDA3937_RS11965	0.12	-2.6
2,720,861	+		DDA3937_RS11965	0.13	-1.6
2,720,861	+		DDA3937_RS11965	0.13	-0.5
2,720,861	+		DDA3937_RS11965	0.13	-1.3
2,720,862	-		DDA3937_RS11965	0.13	-2.5
2,720,947	-		DDA3937_RS11965	0.17	-2.4
2,720,948	+		DDA3937_RS11965	0.17	+0.2
2,720,949	-		DDA3937_RS11965	0.17	-1.5
2,720,949	-		DDA3937_RS11965	0.17	-0.5
2,720,949	-		DDA3937_RS11965	0.17	-4.1
2,721,057	+		DDA3937_RS11965	0.23	-3.6
2,721,058	-		DDA3937_RS11965	0.23	-4.0
2,721,081	+		DDA3937_RS11965	0.24	-2.3
2,721,082	-		DDA3937_RS11965	0.24	-2.6
2,721,086	+		DDA3937_RS11965	0.24	-2.3
2,721,087	-		DDA3937_RS11965	0.24	-2.6
2,721,104	+		DDA3937_RS11965	0.25	-2.8
2,721,105	-		DDA3937_RS11965	0.25	-2.5
2,721,105	-		DDA3937_RS11965	0.25	-2.3
2,721,105	-		DDA3937_RS11965	0.25	-1.5
2,721,152	+		DDA3937_RS11965	0.27	-0.8
2,721,308	+		DDA3937_RS11965	0.35	-3.0
2,721,308	+		DDA3937_RS11965	0.35	-4.1
2,721,309	-		DDA3937_RS11965	0.35	-3.1
2,721,311	+		DDA3937_RS11965	0.35	-1.1
2,721,311	+		DDA3937_RS11965	0.35	-1.6
2,721,311	+		DDA3937_RS11965	0.35	-0.2
2,721,311	+		DDA3937_RS11965	0.35	-3.6
2,721,312	-		DDA3937_RS11965	0.35	-1.4
2,721,312	-		DDA3937_RS11965	0.35	-1.9
2,721,312	-		DDA3937_RS11965	0.35	-0.8
2,721,315	+		DDA3937_RS11965	0.36	-1.1
2,721,315	+		DDA3937_RS11965	0.36	-2.2
2,721,315	+		DDA3937_RS11965	0.36	-0.8
2,721,315	+		DDA3937_RS11965	0.36	-0.8
2,721,316	-		DDA3937_RS11965	0.36	-1.6
2,721,316	-		DDA3937_RS11965	0.36	-1.6
2,721,316	-		DDA3937_RS11965	0.36	-0.5
2,721,316	-		DDA3937_RS11965	0.36	-0.8
2,721,316	-		DDA3937_RS11965	0.36	-0.5
2,721,316	-		DDA3937_RS11965	0.36	-2.7
2,721,333	+		DDA3937_RS11965	0.36	-2.2
2,721,524	+		DDA3937_RS11965	0.46	-1.1
2,721,524	+		DDA3937_RS11965	0.46	-2.7
2,721,525	-		DDA3937_RS11965	0.46	-1.8
2,721,610	-		DDA3937_RS11965	0.50	-1.5
2,721,610	-		DDA3937_RS11965	0.50	+0.9
2,721,712	+		DDA3937_RS11965	0.55	-2.3
2,721,712	+		DDA3937_RS11965	0.55	-1.3
2,721,712	+		DDA3937_RS11965	0.55	-0.8
2,721,712	+		DDA3937_RS11965	0.55	-1.1
2,721,712	+		DDA3937_RS11965	0.55	-1.1
2,721,713	-		DDA3937_RS11965	0.55	-2.1
2,721,713	-				-0.8
2,721,848	+		DDA3937_RS11965	0.62	-1.4
2,721,934	+		DDA3937_RS11965	0.66	-2.1
2,721,938	+		DDA3937_RS11965	0.66	-1.3
2,721,938	+		DDA3937_RS11965	0.66	-0.9
2,721,938	+		DDA3937_RS11965	0.66	-3.2
2,721,939	-		DDA3937_RS11965	0.66	-1.9
2,722,106	+		DDA3937_RS11965	0.75	-0.5
2,722,107	-		DDA3937_RS11965	0.75	-1.9
2,722,185	+		DDA3937_RS11965	0.79	-3.7
2,722,241	+		DDA3937_RS11965	0.81	-1.5
2,722,274	+		DDA3937_RS11965	0.83	-1.6
2,722,275	-		DDA3937_RS11965	0.83	-1.6
2,722,275	-		DDA3937_RS11965	0.83	-2.4
2,722,275	-		DDA3937_RS11965	0.83	-1.8
2,722,374	+		DDA3937_RS11965	0.88	-1.6
2,722,374	+		DDA3937_RS11965	0.88	-0.6
2,722,383	-		DDA3937_RS11965	0.88	-1.8
2,722,400	+		DDA3937_RS11965	0.89	-2.2
2,722,589	-				-1.1
2,722,691	+				-2.6
2,722,789	+		DDA3937_RS11970	0.21	-2.1
2,722,789	+		DDA3937_RS11970	0.21	-0.8
2,722,790	-		DDA3937_RS11970	0.21	-0.1
2,723,081	+		DDA3937_RS11970	0.61	-0.8
2,723,081	+		DDA3937_RS11970	0.61	-2.6
2,723,082	-		DDA3937_RS11970	0.61	-2.2
2,723,082	-		DDA3937_RS11970	0.61	-1.9
2,723,155	-		DDA3937_RS11970	0.71	-3.6
2,723,155	-		DDA3937_RS11970	0.71	-1.6
2,723,178	+		DDA3937_RS11970	0.74	-3.1
2,723,179	-		DDA3937_RS11970	0.74	-1.9
2,723,179	-		DDA3937_RS11970	0.74	-3.2
2,723,324	-				-2.5
2,723,338	+				-1.5
2,723,341	+				-1.3
2,723,353	+				-1.3
2,723,353	+				-1.1
2,723,354	-				-3.0
2,723,382	+				-0.1
2,723,383	-				+0.3
2,723,383	-				-1.7
2,723,425	+				-3.5
2,723,425	+				-0.5
2,723,427	+				-2.9
2,723,427	+				-3.3
2,723,427	+				-1.8
2,723,427	+				-0.8
2,723,428	-				+0.1
2,723,428	-				-0.8
2,723,428	-				+2.3
2,723,428	-				-0.3
2,723,449	+				-1.8
2,723,449	+				-2.1
2,723,449	+				-1.5
2,723,450	-				-1.1
2,723,450	-				-0.5
2,723,450	-				-0.9
2,723,450	-				-1.8
2,723,455	-				+2.7
2,723,471	-				-0.1
2,723,471	-				+0.2
2,723,471	-				-3.1
2,723,519	+		DDA3937_RS11975	0.13	-0.8