Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11640

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,645,539	+				-2.9
2,645,539	+				+0.7
2,645,539	+				+2.3
2,645,539	+				+1.4
2,645,539	+				+1.0
2,645,540	-				-2.3
2,645,558	+				-3.0
2,645,558	+				+0.8
2,645,558	+				+0.3
2,645,559	-				+0.0
2,645,559	-				+1.5
2,645,559	-				-1.5
2,645,708	+		DDA3937_RS11630	0.21	-0.9
2,645,730	+		DDA3937_RS11630	0.27	-3.5
2,645,772	+		DDA3937_RS11630	0.38	-1.5
2,645,772	+		DDA3937_RS11630	0.38	+1.5
2,645,772	+		DDA3937_RS11630	0.38	-1.2
2,645,772	+		DDA3937_RS11630	0.38	-1.5
2,645,773	-		DDA3937_RS11630	0.39	-1.3
2,645,776	+		DDA3937_RS11630	0.39	-0.2
2,645,777	-		DDA3937_RS11630	0.40	-0.6
2,645,898	+		DDA3937_RS11630	0.73	-0.5
2,645,899	-		DDA3937_RS11630	0.73	-1.3
2,645,899	-		DDA3937_RS11630	0.73	-2.4
2,645,928	+		DDA3937_RS11630	0.81	+1.4
2,646,072	+				-1.8
2,646,072	+				-1.5
2,646,073	-				+1.5
2,646,073	-				-1.6
2,646,073	-				-0.8
2,646,167	+		DDA3937_RS11635	0.42	-1.1
2,646,168	-		DDA3937_RS11635	0.42	-1.1
2,646,287	+				+0.9
2,646,287	+				-0.4
2,646,288	-				-3.2
2,646,288	-				-0.8
2,646,288	-				+0.3
2,646,291	+				-3.3
2,646,291	+				-1.9
2,646,301	+				-0.8
2,646,308	+				+1.1
2,646,309	-				+2.2
2,646,315	+				-0.5
2,646,316	-				+1.9
2,646,346	-				+0.3
2,646,346	-				+1.1
2,646,364	+				-2.1
2,646,364	+				+0.9
2,646,364	+				-2.1
2,646,364	+				-1.3
2,646,365	-				-0.4
2,646,365	-				-1.4
2,646,365	-				+1.2
2,646,369	+				-0.8
2,646,369	+				+3.1
2,646,369	+				-1.6
2,646,370	-				+0.8
2,646,370	-				-1.3
2,646,370	-				+2.5
2,646,370	-				-0.1
2,646,370	-				+1.5
2,646,370	-				-3.1
2,646,370	-				-1.2
2,646,370	-				+2.4
2,646,370	-				+0.0
2,646,370	-				+2.1
2,646,373	+				+0.3
2,646,380	+				-0.8
2,646,380	+				-2.1
2,646,380	+				-1.5
2,646,380	+				+1.2
2,646,380	+				-1.9
2,646,381	-				+0.9
2,646,381	-				+1.4
2,646,403	+				-0.7
2,646,438	-				-2.7
2,646,494	+				-1.5
2,646,540	+				-0.9
2,646,540	+				-1.3
2,646,625	-		DDA3937_RS11640	0.18	-0.1
2,646,637	+		DDA3937_RS11640	0.19	+0.2
2,646,638	-		DDA3937_RS11640	0.19	+1.7
2,646,877	+		DDA3937_RS11640	0.43	+1.2
2,646,896	+		DDA3937_RS11640	0.45	+0.5
2,646,897	-		DDA3937_RS11640	0.45	+1.6
2,646,897	-		DDA3937_RS11640	0.45	+0.0
2,646,970	-		DDA3937_RS11640	0.53	+0.8
2,647,059	+		DDA3937_RS11640	0.62	-1.3
2,647,060	-		DDA3937_RS11640	0.62	+1.5
2,647,060	-		DDA3937_RS11640	0.62	-1.3
2,647,060	-		DDA3937_RS11640	0.62	+0.6
2,647,109	+		DDA3937_RS11640	0.67	+0.3
2,647,139	+		DDA3937_RS11640	0.70	-1.8
2,647,162	+		DDA3937_RS11640	0.72	+0.5
2,647,163	-		DDA3937_RS11640	0.72	+1.3
2,647,246	-		DDA3937_RS11640	0.81	-0.5
2,647,292	-		DDA3937_RS11640	0.85	-1.1
2,647,297	-		DDA3937_RS11640	0.86	-0.2
2,647,318	-		DDA3937_RS11640	0.88	-3.0
2,647,348	+				-1.6
2,647,348	+				-2.6
2,647,348	+				-0.5
2,647,349	-				-1.3
2,647,349	-				+0.9
2,647,349	-				-0.8
2,647,350	+				-1.5
2,647,350	+				+0.5
2,647,350	+				-1.6
2,647,351	-				+0.5
2,647,351	-				-1.5
2,647,351	-				-3.2
2,647,351	-				-2.1
2,647,351	-				+0.5
2,647,420	-				-1.1
2,647,446	+				-1.3
2,647,457	-				+1.4
2,647,459	-				-0.8
2,647,515	+				-3.0
2,647,515	+				-0.8
2,647,515	+				-1.3
2,647,515	+				-3.5
2,647,515	+				-3.4
2,647,516	-				-2.2
2,647,516	-				+1.0
2,647,516	-				+0.0
2,647,516	-				+0.7
2,647,516	-				+0.2
2,647,516	-				-2.4
2,647,525	+				-1.1
2,647,526	-				-2.3
2,647,526	-				-2.9
2,647,550	+				-3.3
2,647,551	-				+0.5
2,647,551	-				-1.9
2,647,557	+				-2.5
2,647,558	-				-2.5
2,647,573	+				+1.2
2,647,626	+				-0.5
2,647,648	-				-2.3
2,647,648	-				+1.5
2,647,648	-				+1.8
2,647,648	-				-2.1
2,647,650	+				-0.1
2,647,659	-				-2.9
2,647,663	-				+1.1
2,647,673	+				+0.5
2,647,673	+				+1.1
2,647,674	-				+1.4
2,647,674	-				-0.2
2,647,681	-				+3.4
2,647,754	+				-1.3
2,647,755	-				+4.0
2,647,755	-				-0.3
2,647,837	-				+0.1
2,647,837	-				+1.8
2,647,864	+				+1.7
2,647,864	+				-2.3
2,647,864	+				-1.3
2,647,864	+				+0.5
2,647,864	+				+1.9
2,647,864	+				-2.3
2,647,864	+				-3.1
2,647,865	-				-1.8
2,647,865	-				-1.2
2,647,865	-				-4.0
2,647,871	+				-1.2
2,647,871	+				-2.6
2,647,872	-				-3.4
2,647,872	-				+0.8
2,647,904	+				-2.9
2,647,905	-				-0.8
2,647,905	-				+1.5
2,647,905	-				+0.9
2,647,959	+		DDA3937_RS11645	0.13	-0.5
2,647,960	-		DDA3937_RS11645	0.13	-3.1
2,648,073	+		DDA3937_RS11645	0.31	-1.8
2,648,073	+		DDA3937_RS11645	0.31	-2.2
2,648,107	+		DDA3937_RS11645	0.36	-1.3
2,648,107	+		DDA3937_RS11645	0.36	+0.5
2,648,108	-		DDA3937_RS11645	0.36	-1.6
2,648,108	-				+3.4
2,648,108	-		DDA3937_RS11645	0.36	+1.2
2,648,138	+		DDA3937_RS11645	0.41	-1.1
2,648,138	+		DDA3937_RS11645	0.41	-2.6
2,648,138	+		DDA3937_RS11645	0.41	-0.8
2,648,139	-		DDA3937_RS11645	0.41	-2.3
2,648,205	+		DDA3937_RS11645	0.51	+1.3
2,648,205	+		DDA3937_RS11645	0.51	-1.6
2,648,205	+		DDA3937_RS11645	0.51	+1.7
2,648,206	-		DDA3937_RS11645	0.51	-0.1
2,648,206	-		DDA3937_RS11645	0.51	+0.4
2,648,207	+		DDA3937_RS11645	0.52	+1.1
2,648,208	-		DDA3937_RS11645	0.52	-1.3
2,648,228	-		DDA3937_RS11645	0.55	-0.5
2,648,258	+		DDA3937_RS11645	0.60	-3.0
2,648,258	+		DDA3937_RS11645	0.60	-2.1
2,648,258	+		DDA3937_RS11645	0.60	-2.1
2,648,259	-		DDA3937_RS11645	0.60	-1.1