Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11465

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,600,418	-				-0.0
2,600,600	+		DDA3937_RS11460	0.65	-3.3
2,600,600	+		DDA3937_RS11460	0.65	-1.9
2,600,618	-		DDA3937_RS11460	0.67	-1.9
2,600,618	-		DDA3937_RS11460	0.67	+2.9
2,600,618	-		DDA3937_RS11460	0.67	-0.4
2,600,769	-		DDA3937_RS11460	0.84	-1.4
2,600,769	-		DDA3937_RS11460	0.84	+0.8
2,600,804	+		DDA3937_RS11460	0.88	-0.4
2,600,847	-				-0.4
2,600,863	-				-3.5
2,600,912	+				-2.1
2,600,912	+				-2.0
2,600,912	+				-1.8
2,600,913	-				-2.9
2,600,913	-				+1.6
2,600,913	-				+0.4
2,600,979	-				-2.7
2,600,979	-				+1.0
2,601,009	+				+2.8
2,601,009	+				-1.9
2,601,009	+				-1.6
2,601,010	-				-2.2
2,601,010	-				+1.9
2,601,111	+				-1.9
2,601,128	+				-2.0
2,601,128	+				+0.5
2,601,128	+				-2.8
2,601,128	+				-1.0
2,601,128	+				-1.9
2,601,128	+				-0.2
2,601,129	-				-1.4
2,601,129	-				-2.2
2,601,129	-				-0.0
2,601,129	-				+1.6
2,601,132	+				-1.8
2,601,133	-				-1.6
2,601,133	-				+2.3
2,601,133	-				-0.3
2,601,133	-				-2.1
2,601,161	+				-1.9
2,601,161	+				-1.4
2,601,163	+				+0.3
2,601,163	+				-2.1
2,601,163	+				-3.1
2,601,163	+				-1.2
2,601,164	-				-0.6
2,601,164	-				-1.6
2,601,164	-				-1.8
2,601,164	-				-1.2
2,601,173	+				-0.4
2,601,173	+				-2.0
2,601,174	-				+0.2
2,601,179	+				-0.4
2,601,179	+				-1.1
2,601,180	-				-0.8
2,601,180	-				-1.8
2,601,180	-				-2.1
2,601,201	+				-1.8
2,601,315	+				+0.8
2,601,329	+				-2.6
2,601,347	-				-1.9
2,601,367	+				+2.9
2,601,367	+				+1.0
2,601,367	+				-0.9
2,601,367	+				-0.8
2,601,367	+				-2.0
2,601,367	+				-1.6
2,601,368	-				-2.0
2,601,368	-				-2.4
2,601,368	-				-0.2
2,601,368	-				+0.6
2,601,368	-				+0.8
2,601,368	-				-0.1
2,601,368	-				-2.4
2,601,368	-				+0.6
2,601,368	-				-2.3
2,601,451	+				-0.9
2,601,451	+				-1.2
2,601,452	-				-2.6
2,601,554	-				-1.4
2,601,599	+		DDA3937_RS11465	0.10	-1.4
2,601,599	+		DDA3937_RS11465	0.10	-2.1
2,601,600	-		DDA3937_RS11465	0.10	-1.8
2,601,600	-		DDA3937_RS11465	0.10	-1.4
2,601,600	-		DDA3937_RS11465	0.10	-1.7
2,601,626	+		DDA3937_RS11465	0.12	+1.2
2,601,626	+		DDA3937_RS11465	0.12	-1.0
2,601,671	-		DDA3937_RS11465	0.14	-0.9
2,601,671	-		DDA3937_RS11465	0.14	+2.6
2,601,671	-		DDA3937_RS11465	0.14	-1.4
2,601,682	+		DDA3937_RS11465	0.14	+0.3
2,601,713	+		DDA3937_RS11465	0.16	-1.8
2,601,714	-		DDA3937_RS11465	0.16	-0.2
2,601,714	-		DDA3937_RS11465	0.16	+0.2
2,601,740	+		DDA3937_RS11465	0.17	-1.3
2,601,740	+		DDA3937_RS11465	0.17	-2.8
2,601,740	+		DDA3937_RS11465	0.17	-2.3
2,601,741	-		DDA3937_RS11465	0.17	-2.9
2,601,759	+		DDA3937_RS11465	0.18	-0.7
2,601,759	+		DDA3937_RS11465	0.18	-2.5
2,601,759	+		DDA3937_RS11465	0.18	-2.1
2,601,759	+		DDA3937_RS11465	0.18	+1.0
2,601,760	-		DDA3937_RS11465	0.18	-0.6
2,601,760	-		DDA3937_RS11465	0.18	+1.2
2,601,760	-		DDA3937_RS11465	0.18	-1.6
2,601,960	-		DDA3937_RS11465	0.27	-0.4
2,601,995	+		DDA3937_RS11465	0.29	-1.8
2,601,996	-		DDA3937_RS11465	0.29	-1.5
2,602,022	+		DDA3937_RS11465	0.30	+0.4
2,602,023	-		DDA3937_RS11465	0.30	-3.1
2,602,023	-		DDA3937_RS11465	0.30	-0.6
2,602,024	+		DDA3937_RS11465	0.30	-0.4
2,602,025	-		DDA3937_RS11465	0.30	+1.0
2,602,025	-		DDA3937_RS11465	0.30	+0.4
2,602,062	+		DDA3937_RS11465	0.32	-0.1
2,602,063	-		DDA3937_RS11465	0.32	-2.7
2,602,067	+		DDA3937_RS11465	0.32	-1.4
2,602,067	+		DDA3937_RS11465	0.32	-0.3
2,602,067	+		DDA3937_RS11465	0.32	-2.7
2,602,068	-		DDA3937_RS11465	0.32	+0.3
2,602,068	-		DDA3937_RS11465	0.32	+1.0
2,602,206	-		DDA3937_RS11465	0.38	-3.5
2,602,206	-		DDA3937_RS11465	0.38	-1.2
2,602,229	-		DDA3937_RS11465	0.39	-1.8
2,602,230	+		DDA3937_RS11465	0.39	-3.5
2,602,230	+		DDA3937_RS11465	0.39	-1.9
2,602,231	-		DDA3937_RS11465	0.39	+0.1
2,602,231	-		DDA3937_RS11465	0.39	-0.6
2,602,285	+		DDA3937_RS11465	0.42	+0.3
2,602,353	-		DDA3937_RS11465	0.45	-2.1
2,602,353	-		DDA3937_RS11465	0.45	+1.5
2,602,357	+		DDA3937_RS11465	0.45	+1.1
2,602,357	+		DDA3937_RS11465	0.45	-0.4
2,602,358	-		DDA3937_RS11465	0.45	-1.8
2,602,358	-		DDA3937_RS11465	0.45	-1.2
2,602,358	-		DDA3937_RS11465	0.45	-0.6
2,602,358	-		DDA3937_RS11465	0.45	+0.3
2,602,469	+		DDA3937_RS11465	0.50	+0.5
2,602,469	+		DDA3937_RS11465	0.50	-2.2
2,602,472	-		DDA3937_RS11465	0.51	-1.2
2,602,539	-		DDA3937_RS11465	0.54	-1.0
2,602,544	+		DDA3937_RS11465	0.54	-1.9
2,602,544	+		DDA3937_RS11465	0.54	-2.1
2,602,544	+		DDA3937_RS11465	0.54	+0.2
2,602,545	-		DDA3937_RS11465	0.54	-2.8
2,602,684	+		DDA3937_RS11465	0.60	-0.2
2,602,684	+		DDA3937_RS11465	0.60	-1.6
2,602,761	-		DDA3937_RS11465	0.64	-1.7
2,602,817	+		DDA3937_RS11465	0.66	-1.6
2,602,818	-		DDA3937_RS11465	0.66	-1.2
2,602,874	+		DDA3937_RS11465	0.69	-1.0
2,602,875	-		DDA3937_RS11465	0.69	+0.9
2,602,875	-		DDA3937_RS11465	0.69	-1.8
2,602,886	+		DDA3937_RS11465	0.70	-3.1
2,602,924	+		DDA3937_RS11465	0.71	+1.4
2,602,925	-		DDA3937_RS11465	0.71	-1.9
2,602,925	-		DDA3937_RS11465	0.71	-1.0
2,602,964	+		DDA3937_RS11465	0.73	-0.4
2,603,108	+		DDA3937_RS11465	0.80	-0.0
2,603,109	-		DDA3937_RS11465	0.80	-1.2
2,603,153	+		DDA3937_RS11465	0.82	+1.6
2,603,154	-		DDA3937_RS11465	0.82	+1.0
2,603,154	-		DDA3937_RS11465	0.82	-1.9
2,603,154	-		DDA3937_RS11465	0.82	-0.1
2,603,154	-		DDA3937_RS11465	0.82	+0.5
2,603,156	+		DDA3937_RS11465	0.82	-2.8
2,603,156	+		DDA3937_RS11465	0.82	+1.4
2,603,156	+		DDA3937_RS11465	0.82	+1.6
2,603,156	+		DDA3937_RS11465	0.82	-2.1
2,603,156	+		DDA3937_RS11465	0.82	+0.6
2,603,157	-		DDA3937_RS11465	0.82	-1.1
2,603,157	-		DDA3937_RS11465	0.82	-2.5
2,603,157	-		DDA3937_RS11465	0.82	+0.3
2,603,157	-		DDA3937_RS11465	0.82	-3.7
2,603,157	-		DDA3937_RS11465	0.82	-0.4
2,603,157	-		DDA3937_RS11465	0.82	-1.6
2,603,157	-		DDA3937_RS11465	0.82	-0.6
2,603,157	-		DDA3937_RS11465	0.82	-1.4
2,603,157	-				-0.0
2,603,157	-		DDA3937_RS11465	0.82	-4.0
2,603,160	+		DDA3937_RS11465	0.82	-1.0
2,603,160	+		DDA3937_RS11465	0.82	-1.8
2,603,160	+				+2.3
2,603,160	+		DDA3937_RS11465	0.82	+0.9
2,603,160	+		DDA3937_RS11465	0.82	+0.9
2,603,161	-		DDA3937_RS11465	0.82	+1.1
2,603,246	+		DDA3937_RS11465	0.86	-0.3
2,603,246	+		DDA3937_RS11465	0.86	-3.1
2,603,247	-		DDA3937_RS11465	0.86	-1.8
2,603,407	-				-2.9
2,603,412	-				-1.6
2,603,526	-				-0.6
2,603,564	+				-2.0
2,603,565	-				-1.6
2,603,596	-				+0.9
2,603,619	-				+0.7
2,603,656	-				-2.0
2,603,702	-				+2.2
2,603,702	-				+1.7
2,603,705	-				-2.1
2,603,782	-				+2.0
2,603,835	-				+0.7
2,603,835	-				-1.0
2,603,835	-				+2.6
2,603,923	+				-0.4
2,603,923	+				+4.2
2,603,923	+				-1.8
2,603,939	+				-0.8
2,603,943	+				-0.4
2,603,944	-				-2.8
2,603,966	+				-2.9
2,604,049	+				+1.6
2,604,049	+				-0.6
2,604,056	+				-1.2
2,604,056	+				-2.0
2,604,056	+				-2.5
2,604,057	-				-2.1
2,604,057	-				-1.2
2,604,062	+				+0.3
2,604,071	+				-1.8
2,604,071	+				-0.8
2,604,072	-				-2.4
2,604,103	+				-0.8
2,604,104	-				-0.8
2,604,104	-				-1.4
2,604,104	-				-1.6
2,604,104	-				-3.0
2,604,104	-				+1.9
2,604,104	-				-1.8
2,604,104	-				-1.9
2,604,107	+				-2.1
2,604,107	+				-2.1
2,604,108	-				-2.7
2,604,131	-				-1.1
2,604,148	-				+1.6
2,604,216	+				+2.0
2,604,216	+				-1.6
2,604,217	-				-0.8
2,604,220	-				-2.3
2,604,257	+				-2.3
2,604,257	+				+2.1
2,604,270	+				-2.5
2,604,271	-				-1.1
2,604,352	+				-0.8
2,604,353	-				+3.2
2,604,357	-				-1.8