Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11345

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,576,223	+		DDA3937_RS11340	0.42	-0.7
2,576,223	+		DDA3937_RS11340	0.42	-1.6
2,576,224	-		DDA3937_RS11340	0.42	+0.6
2,576,224	-		DDA3937_RS11340	0.42	-2.6
2,576,224	-		DDA3937_RS11340	0.42	+0.7
2,576,224	-		DDA3937_RS11340	0.42	-1.9
2,576,290	-		DDA3937_RS11340	0.46	+0.3
2,576,298	+		DDA3937_RS11340	0.46	-1.0
2,576,298	+		DDA3937_RS11340	0.46	+0.2
2,576,299	-		DDA3937_RS11340	0.46	-1.2
2,576,299	-		DDA3937_RS11340	0.46	-2.2
2,576,299	-				+0.0
2,576,345	+		DDA3937_RS11340	0.49	-0.1
2,576,345	+		DDA3937_RS11340	0.49	-0.2
2,576,345	+		DDA3937_RS11340	0.49	-0.7
2,576,346	-		DDA3937_RS11340	0.49	-2.8
2,576,346	-		DDA3937_RS11340	0.49	-2.2
2,576,346	-		DDA3937_RS11340	0.49	-3.0
2,576,586	+		DDA3937_RS11340	0.64	-1.2
2,576,587	-		DDA3937_RS11340	0.64	-3.0
2,576,587	-		DDA3937_RS11340	0.64	+0.6
2,576,592	+		DDA3937_RS11340	0.64	-2.0
2,576,599	-		DDA3937_RS11340	0.65	+0.9
2,576,606	+		DDA3937_RS11340	0.65	-1.6
2,576,616	-		DDA3937_RS11340	0.66	+0.9
2,576,658	+		DDA3937_RS11340	0.68	+0.3
2,576,659	-		DDA3937_RS11340	0.68	-1.8
2,576,659	-		DDA3937_RS11340	0.68	-0.2
2,576,679	+		DDA3937_RS11340	0.70	-2.4
2,576,731	-		DDA3937_RS11340	0.73	+0.4
2,576,731	-				+0.0
2,576,746	+		DDA3937_RS11340	0.74	+0.1
2,576,746	+		DDA3937_RS11340	0.74	-2.3
2,576,746	+		DDA3937_RS11340	0.74	+3.3
2,576,907	+		DDA3937_RS11340	0.84	-1.7
2,576,908	-		DDA3937_RS11340	0.84	+0.8
2,576,908	-		DDA3937_RS11340	0.84	+2.6
2,576,936	+		DDA3937_RS11340	0.85	+0.0
2,576,943	+		DDA3937_RS11340	0.86	+0.2
2,576,960	-				+2.4
2,576,965	+		DDA3937_RS11340	0.87	-0.1
2,576,986	-		DDA3937_RS11340	0.88	+1.1
2,576,986	-		DDA3937_RS11340	0.88	-1.3
2,576,986	-		DDA3937_RS11340	0.88	+1.3
2,576,986	-		DDA3937_RS11340	0.88	+2.2
2,577,048	-				-2.0
2,577,087	+				-1.0
2,577,087	+				-3.3
2,577,088	-				-1.4
2,577,133	-				-0.4
2,577,201	-				-0.4
2,577,206	+				+0.1
2,577,248	+				-2.9
2,577,249	-				+0.1
2,577,249	-				-2.4
2,577,249	-				-1.2
2,577,249	-				-1.7
2,577,249	-				-0.1
2,577,249	-				-1.4
2,577,249	-				-0.1
2,577,250	+				-0.4
2,577,260	+				-1.7
2,577,260	+				-1.4
2,577,262	+				-2.2
2,577,262	+				+1.7
2,577,262	+				+3.1
2,577,263	-				-1.2
2,577,263	-				-1.4
2,577,263	-				-1.9
2,577,264	+				+0.6
2,577,265	-				-1.1
2,577,265	-				-1.7
2,577,265	-				-1.7
2,577,267	+				-2.4
2,577,329	+		DDA3937_RS11345	0.12	-0.5
2,577,372	-		DDA3937_RS11345	0.17	-2.5
2,577,385	+		DDA3937_RS11345	0.19	-0.9
2,577,385	+		DDA3937_RS11345	0.19	-2.2
2,577,431	+		DDA3937_RS11345	0.24	+0.5
2,577,431	+		DDA3937_RS11345	0.24	-0.1
2,577,431	+		DDA3937_RS11345	0.24	+1.1
2,577,431	+		DDA3937_RS11345	0.24	-1.4
2,577,431	+		DDA3937_RS11345	0.24	-1.0
2,577,432	-		DDA3937_RS11345	0.24	-0.4
2,577,432	-		DDA3937_RS11345	0.24	-2.0
2,577,432	-		DDA3937_RS11345	0.24	-0.3
2,577,432	-		DDA3937_RS11345	0.24	+1.1
2,577,432	-		DDA3937_RS11345	0.24	-0.4
2,577,432	-		DDA3937_RS11345	0.24	+0.0
2,577,432	-		DDA3937_RS11345	0.24	-1.0
2,577,533	+		DDA3937_RS11345	0.35	-0.7
2,577,533	+		DDA3937_RS11345	0.35	-2.4
2,577,534	-		DDA3937_RS11345	0.35	-3.4
2,577,534	-		DDA3937_RS11345	0.35	-2.2
2,577,556	+		DDA3937_RS11345	0.38	+1.3
2,577,620	-		DDA3937_RS11345	0.45	-0.7
2,577,845	+		DDA3937_RS11345	0.70	-0.7
2,577,900	-		DDA3937_RS11345	0.77	+1.6
2,577,929	+		DDA3937_RS11345	0.80	+1.5
2,577,929	+		DDA3937_RS11345	0.80	-1.2
2,577,935	+				+0.0
2,577,935	+		DDA3937_RS11345	0.80	-0.4
2,577,935	+		DDA3937_RS11345	0.80	-1.4
2,577,935	+		DDA3937_RS11345	0.80	-0.7
2,577,935	+		DDA3937_RS11345	0.80	-2.1
2,577,935	+		DDA3937_RS11345	0.80	-0.4
2,577,936	-		DDA3937_RS11345	0.81	+1.2
2,577,936	-		DDA3937_RS11345	0.81	+0.6
2,577,936	-		DDA3937_RS11345	0.81	+0.6
2,577,936	-		DDA3937_RS11345	0.81	-0.8
2,577,950	+				-0.4
2,577,950	+		DDA3937_RS11345	0.82	-0.5
2,577,950	+		DDA3937_RS11345	0.82	+0.9
2,577,950	+		DDA3937_RS11345	0.82	+0.0
2,577,950	+		DDA3937_RS11345	0.82	-2.9
2,577,951	-		DDA3937_RS11345	0.82	-1.6
2,577,951	-		DDA3937_RS11345	0.82	-0.7
2,577,952	+		DDA3937_RS11345	0.82	-2.0
2,577,952	+		DDA3937_RS11345	0.82	-2.5
2,577,952	+		DDA3937_RS11345	0.82	+0.1
2,577,952	+		DDA3937_RS11345	0.82	-0.3
2,577,953	-		DDA3937_RS11345	0.82	-1.6
2,577,953	-		DDA3937_RS11345	0.82	+0.9
2,577,953	-		DDA3937_RS11345	0.82	-1.9
2,577,953	-		DDA3937_RS11345	0.82	+2.6
2,577,953	-		DDA3937_RS11345	0.82	-2.2
2,577,953	-		DDA3937_RS11345	0.82	+1.0
2,577,953	-		DDA3937_RS11345	0.82	-3.0
2,577,953	-		DDA3937_RS11345	0.82	-0.3
2,577,953	-		DDA3937_RS11345	0.82	-0.4
2,577,953	-		DDA3937_RS11345	0.82	-1.1
2,577,953	-		DDA3937_RS11345	0.82	-1.6
2,577,953	-		DDA3937_RS11345	0.82	+1.6
2,577,953	-		DDA3937_RS11345	0.82	+1.2
2,577,953	-		DDA3937_RS11345	0.82	-2.0
2,577,953	-		DDA3937_RS11345	0.82	-0.5
2,577,956	+		DDA3937_RS11345	0.83	-0.6
2,577,956	+		DDA3937_RS11345	0.83	-1.4
2,577,956	+		DDA3937_RS11345	0.83	+0.2
2,577,956	+		DDA3937_RS11345	0.83	+0.7
2,577,956	+		DDA3937_RS11345	0.83	+0.7
2,577,956	+		DDA3937_RS11345	0.83	-1.3
2,577,956	+		DDA3937_RS11345	0.83	-1.9
2,577,957	-		DDA3937_RS11345	0.83	+2.0
2,577,957	-		DDA3937_RS11345	0.83	-2.2
2,577,957	-		DDA3937_RS11345	0.83	-1.0
2,577,957	-		DDA3937_RS11345	0.83	-1.0
2,577,957	-		DDA3937_RS11345	0.83	+2.2
2,577,957	-		DDA3937_RS11345	0.83	+1.3
2,577,957	-		DDA3937_RS11345	0.83	-0.2
2,577,974	+		DDA3937_RS11345	0.85	-0.8
2,577,975	-		DDA3937_RS11345	0.85	-1.7
2,578,033	-				-0.6
2,578,064	+				-1.7
2,578,065	-				+1.0
2,578,076	+				-0.8
2,578,076	+				+0.6
2,578,077	-				-2.6
2,578,077	-				-1.0
2,578,077	-				-2.7
2,578,109	+				-1.9
2,578,110	-				-1.6
2,578,165	+				-3.6
2,578,165	+				-0.7
2,578,165	+				-2.1
2,578,165	+				-2.3
2,578,166	-				-0.7
2,578,233	+		DDA3937_RS11350	0.15	-1.2
2,578,331	+		DDA3937_RS11350	0.25	-1.4
2,578,359	+		DDA3937_RS11350	0.29	-1.2
2,578,360	-		DDA3937_RS11350	0.29	-0.9
2,578,374	+		DDA3937_RS11350	0.30	+1.3
2,578,375	-		DDA3937_RS11350	0.30	-2.8
2,578,375	-		DDA3937_RS11350	0.30	-0.8
2,578,375	-		DDA3937_RS11350	0.30	+0.4
2,578,375	-		DDA3937_RS11350	0.30	-2.4
2,578,375	-		DDA3937_RS11350	0.30	-1.6
2,578,375	-		DDA3937_RS11350	0.30	-0.5
2,578,385	+		DDA3937_RS11350	0.31	-1.1
2,578,385	+		DDA3937_RS11350	0.31	-0.7
2,578,385	+		DDA3937_RS11350	0.31	+0.0
2,578,386	-		DDA3937_RS11350	0.32	-1.7
2,578,395	+		DDA3937_RS11350	0.33	-1.2
2,578,395	+		DDA3937_RS11350	0.33	+0.9
2,578,396	-		DDA3937_RS11350	0.33	-2.9
2,578,528	+		DDA3937_RS11350	0.47	-0.9
2,578,529	-		DDA3937_RS11350	0.47	+0.9
2,578,545	+		DDA3937_RS11350	0.49	-3.2
2,578,545	+		DDA3937_RS11350	0.49	-0.7
2,578,546	-		DDA3937_RS11350	0.49	-1.6
2,578,546	-		DDA3937_RS11350	0.49	-1.2
2,578,546	-		DDA3937_RS11350	0.49	-2.6
2,578,581	+		DDA3937_RS11350	0.53	+0.2
2,578,581	+		DDA3937_RS11350	0.53	+1.1
2,578,581	+		DDA3937_RS11350	0.53	-0.4
2,578,582	-		DDA3937_RS11350	0.53	-0.2
2,578,582	-		DDA3937_RS11350	0.53	-2.2
2,578,582	-		DDA3937_RS11350	0.53	-1.0
2,578,593	+		DDA3937_RS11350	0.54	-3.0
2,578,593	+		DDA3937_RS11350	0.54	+1.1
2,578,593	+		DDA3937_RS11350	0.54	+3.4
2,578,594	-		DDA3937_RS11350	0.55	+0.3
2,578,594	-		DDA3937_RS11350	0.55	-1.4
2,578,594	-		DDA3937_RS11350	0.55	+2.9
2,578,594	-		DDA3937_RS11350	0.55	-3.0
2,578,594	-		DDA3937_RS11350	0.55	+0.2
2,578,594	-		DDA3937_RS11350	0.55	-1.1
2,578,723	-		DDA3937_RS11350	0.69	+1.3
2,578,815	+		DDA3937_RS11350	0.79	+0.3
2,578,815	+		DDA3937_RS11350	0.79	-1.4
2,578,815	+		DDA3937_RS11350	0.79	+2.2
2,578,815	+		DDA3937_RS11350	0.79	-0.9
2,578,821	+		DDA3937_RS11350	0.80	+1.0
2,578,865	+		DDA3937_RS11350	0.85	-0.6
2,578,934	+				+0.2
2,578,934	+				-2.2
2,578,934	+				+2.4
2,578,935	-				+0.0
2,578,935	-				+1.7
2,578,963	-				-2.0
2,579,001	+				+1.8
2,579,013	+				-0.3
2,579,014	-				-1.7
2,579,014	-				+1.3