Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10940

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,466,819	+				-1.4
2,466,831	+				-0.4
2,466,831	+				-1.4
2,466,832	-				-0.3
2,466,832	-				+0.0
2,466,832	-				+0.0
2,466,832	-				-1.0
2,466,834	-				-0.6
2,467,020	+		DDA3937_RS10930	0.14	+0.9
2,467,051	+		DDA3937_RS10930	0.20	-0.7
2,467,052	-		DDA3937_RS10930	0.21	-0.4
2,467,066	+		DDA3937_RS10930	0.23	+2.1
2,467,067	-		DDA3937_RS10930	0.23	+0.9
2,467,067	-		DDA3937_RS10930	0.23	-0.8
2,467,067	-		DDA3937_RS10930	0.23	-2.6
2,467,067	-		DDA3937_RS10930	0.23	-3.4
2,467,085	+		DDA3937_RS10930	0.27	-2.3
2,467,085	+		DDA3937_RS10930	0.27	+0.4
2,467,256	+		DDA3937_RS10930	0.59	-1.3
2,467,256	+		DDA3937_RS10930	0.59	-2.2
2,467,256	+		DDA3937_RS10930	0.59	+1.5
2,467,256	+		DDA3937_RS10930	0.59	+1.8
2,467,257	-		DDA3937_RS10930	0.60	-1.2
2,467,257	-		DDA3937_RS10930	0.60	-0.4
2,467,257	-		DDA3937_RS10930	0.60	-0.9
2,467,296	+		DDA3937_RS10930	0.67	-1.1
2,467,322	+		DDA3937_RS10930	0.72	+2.1
2,467,322	+		DDA3937_RS10930	0.72	+2.9
2,467,322	+		DDA3937_RS10930	0.72	+0.0
2,467,322	+		DDA3937_RS10930	0.72	-0.7
2,467,400	-		DDA3937_RS10930	0.87	+0.8
2,467,404	-		DDA3937_RS10930	0.88	-3.5
2,467,411	+		DDA3937_RS10930	0.89	-0.4
2,467,444	+				+0.9
2,467,467	-				+1.6
2,467,623	+				-2.6
2,467,623	+				-3.8
2,467,624	-				+0.3
2,467,631	+				-2.0
2,467,631	+				+0.6
2,467,646	+				-1.5
2,467,647	-				-0.7
2,467,647	-				+1.2
2,467,665	+				-0.4
2,467,666	-				+1.2
2,467,688	+				-0.7
2,467,688	+				-2.9
2,467,688	+				-2.4
2,467,689	-				+1.5
2,467,689	-				+0.6
2,467,689	-				+1.7
2,467,689	-				-1.8
2,467,689	-				-2.3
2,467,689	-				-1.4
2,467,689	-				-2.4
2,467,691	-				-2.1
2,467,691	-				-0.7
2,467,691	-				+0.2
2,467,722	-				-2.4
2,467,779	+				-0.6
2,467,792	+				+0.2
2,467,879	-				+2.1
2,467,905	+				-3.0
2,467,905	+				+0.7
2,467,933	-				-2.4
2,467,933	-				-1.7
2,468,034	+		DDA3937_RS10940	0.12	-2.0
2,468,034	+		DDA3937_RS10940	0.12	+0.5
2,468,035	-		DDA3937_RS10940	0.12	-2.6
2,468,035	-		DDA3937_RS10940	0.12	-1.8
2,468,051	-		DDA3937_RS10940	0.13	+0.5
2,468,051	-		DDA3937_RS10940	0.13	+1.0
2,468,061	-		DDA3937_RS10940	0.14	+1.3
2,468,242	+		DDA3937_RS10940	0.23	+0.5
2,468,242	+		DDA3937_RS10940	0.23	+0.6
2,468,243	-		DDA3937_RS10940	0.23	+1.0
2,468,306	+		DDA3937_RS10940	0.26	-0.4
2,468,307	-		DDA3937_RS10940	0.26	-0.1
2,468,378	+		DDA3937_RS10940	0.30	+0.4
2,468,378	+		DDA3937_RS10940	0.30	-1.2
2,468,379	-		DDA3937_RS10940	0.30	+1.1
2,468,379	-		DDA3937_RS10940	0.30	-2.0
2,468,395	+		DDA3937_RS10940	0.31	+2.2
2,468,395	+		DDA3937_RS10940	0.31	-1.8
2,468,396	-		DDA3937_RS10940	0.31	-0.0
2,468,537	-		DDA3937_RS10940	0.38	-1.6
2,468,537	-		DDA3937_RS10940	0.38	-1.7
2,468,654	-		DDA3937_RS10940	0.44	+0.1
2,468,669	+		DDA3937_RS10940	0.45	-1.0
2,468,669	+		DDA3937_RS10940	0.45	-2.3
2,468,669	+		DDA3937_RS10940	0.45	-2.3
2,468,669	+		DDA3937_RS10940	0.45	-1.8
2,468,669	+		DDA3937_RS10940	0.45	+2.8
2,468,670	-		DDA3937_RS10940	0.45	-0.1
2,468,695	+		DDA3937_RS10940	0.46	-1.7
2,468,747	+		DDA3937_RS10940	0.49	+1.6
2,468,747	+		DDA3937_RS10940	0.49	-0.5
2,468,752	+		DDA3937_RS10940	0.49	+2.5
2,468,752	+		DDA3937_RS10940	0.49	+3.2
2,468,752	+		DDA3937_RS10940	0.49	+3.9
2,468,805	+		DDA3937_RS10940	0.52	-0.3
2,468,805	+		DDA3937_RS10940	0.52	+2.9
2,468,835	+		DDA3937_RS10940	0.53	+0.6
2,468,835	+		DDA3937_RS10940	0.53	-2.6
2,468,836	-		DDA3937_RS10940	0.53	-0.2
2,468,836	-		DDA3937_RS10940	0.53	-2.4
2,468,850	+		DDA3937_RS10940	0.54	+1.2
2,468,850	+		DDA3937_RS10940	0.54	+1.7
2,468,850	+		DDA3937_RS10940	0.54	-1.1
2,468,850	+		DDA3937_RS10940	0.54	+1.5
2,468,850	+		DDA3937_RS10940	0.54	+2.9
2,468,851	-		DDA3937_RS10940	0.54	-0.9
2,468,851	-		DDA3937_RS10940	0.54	-1.4
2,468,851	-		DDA3937_RS10940	0.54	+0.2
2,468,851	-		DDA3937_RS10940	0.54	-1.7
2,468,854	-		DDA3937_RS10940	0.54	-1.0
2,468,854	-		DDA3937_RS10940	0.54	-2.2
2,468,964	+		DDA3937_RS10940	0.60	-0.5
2,468,964	+		DDA3937_RS10940	0.60	+0.8
2,469,033	-		DDA3937_RS10940	0.64	-1.8
2,469,214	+		DDA3937_RS10940	0.73	-1.2
2,469,215	-		DDA3937_RS10940	0.73	-1.6
2,469,215	-		DDA3937_RS10940	0.73	-1.7
2,469,262	-		DDA3937_RS10940	0.75	+2.0
2,469,295	+		DDA3937_RS10940	0.77	-0.7
2,469,296	-		DDA3937_RS10940	0.77	+1.6
2,469,316	+		DDA3937_RS10940	0.78	-2.6
2,469,317	-		DDA3937_RS10940	0.78	+0.4
2,469,436	-		DDA3937_RS10940	0.84	-2.8
2,469,436	-		DDA3937_RS10940	0.84	-2.8
2,469,436	-		DDA3937_RS10940	0.84	+1.6
2,469,602	-				-2.4
2,469,634	+				-1.0
2,469,635	-				-2.5
2,469,635	-				-0.4
2,469,676	+				-1.3
2,469,676	+				-1.6
2,469,676	+				+1.9
2,469,676	+				+1.5
2,469,676	+				-1.0
2,469,677	-				-2.6
2,469,677	-				+1.0
2,469,677	-				-0.4
2,469,677	-				+0.1
2,469,677	-				-1.3
2,469,685	+				-0.2
2,469,685	+				-0.1
2,469,685	+				-1.0
2,469,816	-				-1.7
2,469,816	-				-1.0
2,469,836	-				-1.2
2,469,859	+				-2.2
2,469,860	-				+2.3
2,469,860	-				+0.6
2,469,860	-				-2.4
2,469,860	-				-2.0
2,469,882	+				+0.0
2,469,882	+				+1.1
2,469,927	-				-2.0
2,469,983	-		DDA3937_RS10945	0.13	-1.1
2,469,991	-		DDA3937_RS10945	0.14	-1.2
2,470,012	+		DDA3937_RS10945	0.18	-1.0
2,470,013	-		DDA3937_RS10945	0.19	-2.2
2,470,026	-		DDA3937_RS10945	0.21	-0.9
2,470,070	+		DDA3937_RS10945	0.29	+0.3
2,470,081	-		DDA3937_RS10945	0.31	-0.4
2,470,117	+		DDA3937_RS10945	0.38	-1.0
2,470,190	+		DDA3937_RS10945	0.51	-1.9
2,470,209	+		DDA3937_RS10945	0.55	+0.9
2,470,225	-		DDA3937_RS10945	0.58	-0.1
2,470,235	-		DDA3937_RS10945	0.60	-2.3
2,470,366	+		DDA3937_RS10945	0.84	-0.0
2,470,367	-		DDA3937_RS10945	0.84	+2.3
2,470,415	-				-2.9
2,470,450	+				+0.9
2,470,450	+				+1.1
2,470,451	-				+0.1
2,470,455	+				-1.6
2,470,456	-				+0.6
2,470,513	+				+1.7
2,470,513	+				-0.2
2,470,513	+				-1.2
2,470,514	-				-0.9
2,470,526	+				+0.6
2,470,527	-				+1.2
2,470,545	+				-0.4
2,470,546	-				-0.2
2,470,567	+				+2.3
2,470,597	+				-2.5
2,470,609	-				+3.4
2,470,615	+				-0.7
2,470,616	-				-1.1