Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10850

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,445,223	+		DDA3937_RS10845	0.68	+0.1
2,445,223	+		DDA3937_RS10845	0.68	-1.2
2,445,223	+		DDA3937_RS10845	0.68	-1.0
2,445,224	-		DDA3937_RS10845	0.68	-1.3
2,445,224	-		DDA3937_RS10845	0.68	-1.8
2,445,224	-		DDA3937_RS10845	0.68	-1.7
2,445,316	+				+0.0
2,445,316	+		DDA3937_RS10845	0.71	-0.6
2,445,481	+		DDA3937_RS10845	0.76	-1.7
2,445,482	-		DDA3937_RS10845	0.76	+1.2
2,445,482	-		DDA3937_RS10845	0.76	-1.7
2,445,482	-		DDA3937_RS10845	0.76	+3.2
2,445,715	+		DDA3937_RS10845	0.84	-1.4
2,445,715	+		DDA3937_RS10845	0.84	-0.4
2,445,715	+		DDA3937_RS10845	0.84	-0.7
2,445,757	+		DDA3937_RS10845	0.86	-0.7
2,445,758	-		DDA3937_RS10845	0.86	-2.9
2,445,758	-		DDA3937_RS10845	0.86	+0.1
2,445,765	+		DDA3937_RS10845	0.86	-1.0
2,445,765	+		DDA3937_RS10845	0.86	-2.9
2,445,765	+		DDA3937_RS10845	0.86	-1.0
2,445,766	-		DDA3937_RS10845	0.86	+1.1
2,445,766	-		DDA3937_RS10845	0.86	-0.6
2,445,805	+		DDA3937_RS10845	0.87	+0.2
2,445,805	+		DDA3937_RS10845	0.87	-1.2
2,445,805	+		DDA3937_RS10845	0.87	-2.1
2,445,808	+		DDA3937_RS10845	0.87	+1.3
2,445,808	+		DDA3937_RS10845	0.87	+2.4
2,445,808	+		DDA3937_RS10845	0.87	-1.6
2,445,809	-		DDA3937_RS10845	0.87	+0.6
2,445,809	-		DDA3937_RS10845	0.87	+0.4
2,445,809	-		DDA3937_RS10845	0.87	-1.8
2,445,809	-		DDA3937_RS10845	0.87	-1.2
2,445,810	+		DDA3937_RS10845	0.87	+1.3
2,445,870	-		DDA3937_RS10845	0.89	-1.4
2,445,934	+				-1.0
2,445,935	-				-1.4
2,445,989	+				+0.9
2,445,990	-				-0.8
2,445,990	-				+0.5
2,445,990	-				-2.0
2,446,067	+				+1.2
2,446,067	+				-0.8
2,446,068	-				-2.0
2,446,068	-				+1.5
2,446,150	+				+1.7
2,446,150	+				-1.2
2,446,151	-				+4.7
2,446,231	+				+0.6
2,446,231	+				+0.7
2,446,232	-				-0.6
2,446,232	-				+1.0
2,446,232	-				+0.6
2,446,232	-				-2.6
2,446,431	+				+0.7
2,446,431	+				-1.8
2,446,431	+				-2.5
2,446,607	-		DDA3937_RS10850	0.17	-0.7
2,446,631	+		DDA3937_RS10850	0.18	-0.4
2,446,631	+		DDA3937_RS10850	0.18	-1.3
2,446,631	+		DDA3937_RS10850	0.18	-2.0
2,446,631	+		DDA3937_RS10850	0.18	-1.0
2,446,634	+		DDA3937_RS10850	0.18	+0.0
2,446,635	-		DDA3937_RS10850	0.18	-2.8
2,446,641	+		DDA3937_RS10850	0.18	+1.8
2,446,641	+		DDA3937_RS10850	0.18	+4.8
2,446,651	+		DDA3937_RS10850	0.19	-1.6
2,446,788	+		DDA3937_RS10850	0.24	-1.0
2,446,789	-		DDA3937_RS10850	0.24	-3.0
2,446,789	-		DDA3937_RS10850	0.24	-1.2
2,446,926	+		DDA3937_RS10850	0.30	-2.5
2,446,926	+		DDA3937_RS10850	0.30	-2.4
2,446,926	+		DDA3937_RS10850	0.30	+0.7
2,446,926	+		DDA3937_RS10850	0.30	+0.3
2,446,927	-		DDA3937_RS10850	0.30	+0.3
2,446,927	-		DDA3937_RS10850	0.30	-0.7
2,446,927	-		DDA3937_RS10850	0.30	-0.4
2,446,987	+		DDA3937_RS10850	0.32	-3.1
2,446,987	+		DDA3937_RS10850	0.32	+0.9
2,446,987	+		DDA3937_RS10850	0.32	-0.6
2,446,988	-		DDA3937_RS10850	0.32	-1.7
2,447,039	+		DDA3937_RS10850	0.34	+1.9
2,447,040	-		DDA3937_RS10850	0.34	+1.9
2,447,040	-		DDA3937_RS10850	0.34	+0.7
2,447,072	+		DDA3937_RS10850	0.36	-2.1
2,447,072	+		DDA3937_RS10850	0.36	+2.5
2,447,359	-		DDA3937_RS10850	0.47	-0.0
2,447,373	+		DDA3937_RS10850	0.48	-1.8
2,447,375	+		DDA3937_RS10850	0.48	+0.4
2,447,375	+		DDA3937_RS10850	0.48	+0.9
2,447,376	-		DDA3937_RS10850	0.48	-1.6
2,447,437	+		DDA3937_RS10850	0.50	-0.2
2,447,437	+				+0.0
2,447,437	+		DDA3937_RS10850	0.50	-0.6
2,447,437	+		DDA3937_RS10850	0.50	+0.9
2,447,568	+		DDA3937_RS10850	0.55	+0.0
2,447,568	+		DDA3937_RS10850	0.55	-0.4
2,447,569	-		DDA3937_RS10850	0.55	+0.9
2,447,570	+		DDA3937_RS10850	0.55	+0.6
2,447,570	+		DDA3937_RS10850	0.55	-1.8
2,447,570	+		DDA3937_RS10850	0.55	+1.6
2,447,571	-		DDA3937_RS10850	0.55	-0.1
2,447,587	+		DDA3937_RS10850	0.56	-0.7
2,447,595	+		DDA3937_RS10850	0.56	-1.2
2,447,596	-		DDA3937_RS10850	0.56	+0.1
2,447,813	+		DDA3937_RS10850	0.65	-3.6
2,447,881	+		DDA3937_RS10850	0.68	+1.5
2,447,902	+		DDA3937_RS10850	0.69	-1.2
2,447,902	+		DDA3937_RS10850	0.69	-1.4
2,447,902	+		DDA3937_RS10850	0.69	-1.6
2,447,903	-		DDA3937_RS10850	0.69	-0.7
2,447,903	-		DDA3937_RS10850	0.69	+2.2
2,447,903	-		DDA3937_RS10850	0.69	-2.2
2,447,903	-		DDA3937_RS10850	0.69	-1.4
2,447,903	-		DDA3937_RS10850	0.69	-3.0
2,447,903	-		DDA3937_RS10850	0.69	-1.6
2,447,913	+		DDA3937_RS10850	0.69	-1.0
2,447,994	+		DDA3937_RS10850	0.72	+1.4
2,447,994	+		DDA3937_RS10850	0.72	-2.1
2,447,994	+		DDA3937_RS10850	0.72	+2.0
2,447,994	+		DDA3937_RS10850	0.72	+1.1
2,447,994	+		DDA3937_RS10850	0.72	-0.8
2,447,994	+		DDA3937_RS10850	0.72	-1.6
2,447,995	-		DDA3937_RS10850	0.72	+0.0
2,447,995	-		DDA3937_RS10850	0.72	+1.2
2,447,995	-		DDA3937_RS10850	0.72	-1.8
2,447,995	-		DDA3937_RS10850	0.72	+2.2
2,447,995	-		DDA3937_RS10850	0.72	-0.2
2,447,995	-		DDA3937_RS10850	0.72	-3.2
2,447,995	-		DDA3937_RS10850	0.72	-2.0
2,448,117	+		DDA3937_RS10850	0.77	+1.5
2,448,117	+		DDA3937_RS10850	0.77	-0.4
2,448,117	+		DDA3937_RS10850	0.77	+0.8
2,448,117	+		DDA3937_RS10850	0.77	+0.3
2,448,117	+		DDA3937_RS10850	0.77	-0.8
2,448,117	+		DDA3937_RS10850	0.77	+2.3
2,448,117	+		DDA3937_RS10850	0.77	-1.2
2,448,117	+		DDA3937_RS10850	0.77	-2.6
2,448,117	+		DDA3937_RS10850	0.77	+2.6
2,448,117	+				-0.4
2,448,118	-		DDA3937_RS10850	0.77	+1.4
2,448,118	-		DDA3937_RS10850	0.77	-3.4
2,448,118	-		DDA3937_RS10850	0.77	-2.2
2,448,118	-		DDA3937_RS10850	0.77	+0.4
2,448,118	-		DDA3937_RS10850	0.77	-2.8
2,448,118	-		DDA3937_RS10850	0.77	-1.0
2,448,118	-		DDA3937_RS10850	0.77	-0.7
2,448,202	+		DDA3937_RS10850	0.81	+1.5
2,448,203	-		DDA3937_RS10850	0.81	-3.3
2,448,212	+		DDA3937_RS10850	0.81	-2.6
2,448,320	+		DDA3937_RS10850	0.85	-0.4
2,448,321	-		DDA3937_RS10850	0.85	-0.7
2,448,321	-		DDA3937_RS10850	0.85	-1.5
2,448,323	+		DDA3937_RS10850	0.85	+4.8
2,448,540	-				+0.0
2,448,547	-				+1.5
2,448,547	-				-1.2
2,448,547	-				+0.9
2,448,547	-				-2.8
2,448,549	+				-3.1
2,448,549	+				+0.0
2,448,549	+				-1.9
2,448,549	+				+2.8
2,448,549	+				+3.9
2,448,550	-				-3.7
2,448,550	-				+1.8
2,448,550	-				-0.9
2,448,550	-				-1.6
2,448,550	-				+3.4
2,448,555	+				-0.4
2,448,555	+				+1.2
2,448,555	+				-0.2
2,448,555	+				+0.8
2,448,555	+				-1.5
2,448,555	+				+1.2
2,448,555	+				+0.6
2,448,555	+				-0.5
2,448,556	-				-0.7
2,448,556	-				-1.6
2,448,556	-				-0.8
2,448,556	-				-0.8
2,448,556	-				-0.4
2,448,705	-				-2.1
2,448,749	-				-0.2
2,448,749	-				+2.3
2,448,790	+				+1.6
2,448,791	-				+2.6
2,448,791	-				-1.8
2,448,831	-				-2.0
2,448,836	+				-0.2
2,448,868	+				+1.1
2,448,876	-				-0.7
2,448,876	-				+3.2
2,448,881	+				-1.0
2,448,881	+				-0.9
2,448,882	-				+0.2
2,448,914	+				-0.4
2,448,923	-				+0.0
2,448,934	+				+0.0
2,448,941	+				-1.2
2,449,050	-				-1.4
2,449,132	-				-0.4
2,449,164	+				+1.6
2,449,166	+				-3.0
2,449,166	+				-1.3
2,449,166	+				-1.2
2,449,167	-				-0.7
2,449,167	-				+0.6
2,449,167	-				+0.2
2,449,167	-				-1.7
2,449,189	-				-0.4
2,449,189	-				-1.3
2,449,265	+				-0.7
2,449,265	+				-1.4
2,449,279	+				+2.6
2,449,280	-				-0.3
2,449,280	-				-0.3
2,449,280	-				-2.4
2,449,280	-				-2.2
2,449,280	-				-2.1
2,449,324	-		DDA3937_RS10855	0.11	-1.0
2,449,386	-		DDA3937_RS10855	0.25	+2.9
2,449,545	+		DDA3937_RS10855	0.59	+2.1
2,449,595	+				+0.0
2,449,596	-		DDA3937_RS10855	0.71	-2.0