Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10810

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,432,877	+		DDA3937_RS10805	0.52	-1.8
2,432,878	-		DDA3937_RS10805	0.52	-0.5
2,432,935	+		DDA3937_RS10805	0.56	-0.6
2,432,935	+		DDA3937_RS10805	0.56	-1.7
2,432,935	+		DDA3937_RS10805	0.56	+0.6
2,432,935	+		DDA3937_RS10805	0.56	+0.0
2,432,936	-				+0.6
2,432,936	-		DDA3937_RS10805	0.56	+1.0
2,432,936	-		DDA3937_RS10805	0.56	-2.7
2,433,021	+		DDA3937_RS10805	0.62	-1.2
2,433,022	-		DDA3937_RS10805	0.62	-2.2
2,433,061	-		DDA3937_RS10805	0.65	-1.2
2,433,061	-		DDA3937_RS10805	0.65	-1.4
2,433,061	-		DDA3937_RS10805	0.65	-1.3
2,433,061	-		DDA3937_RS10805	0.65	+0.0
2,433,127	+		DDA3937_RS10805	0.70	-1.0
2,433,127	+		DDA3937_RS10805	0.70	-1.7
2,433,127	+		DDA3937_RS10805	0.70	+0.6
2,433,156	+		DDA3937_RS10805	0.72	-1.6
2,433,156	+				+2.8
2,433,156	+		DDA3937_RS10805	0.72	-0.6
2,433,156	+		DDA3937_RS10805	0.72	+0.7
2,433,156	+		DDA3937_RS10805	0.72	-1.8
2,433,156	+		DDA3937_RS10805	0.72	+2.7
2,433,157	-		DDA3937_RS10805	0.72	+0.7
2,433,157	-		DDA3937_RS10805	0.72	-0.7
2,433,157	-		DDA3937_RS10805	0.72	-1.7
2,433,157	-		DDA3937_RS10805	0.72	-0.4
2,433,236	+		DDA3937_RS10805	0.77	-0.2
2,433,236	+		DDA3937_RS10805	0.77	-1.6
2,433,236	+		DDA3937_RS10805	0.77	-1.8
2,433,237	-		DDA3937_RS10805	0.77	-0.2
2,433,298	+		DDA3937_RS10805	0.81	-0.2
2,433,310	+		DDA3937_RS10805	0.82	-1.4
2,433,310	+		DDA3937_RS10805	0.82	-1.0
2,433,330	+		DDA3937_RS10805	0.84	+0.9
2,433,356	+		DDA3937_RS10805	0.85	-1.4
2,433,356	+		DDA3937_RS10805	0.85	+1.4
2,433,356	+		DDA3937_RS10805	0.85	-2.1
2,433,356	+		DDA3937_RS10805	0.85	-0.6
2,433,357	-				+0.6
2,433,357	-		DDA3937_RS10805	0.86	-1.9
2,433,357	-		DDA3937_RS10805	0.86	-2.0
2,433,357	-		DDA3937_RS10805	0.86	-2.4
2,433,357	-		DDA3937_RS10805	0.86	+1.6
2,433,357	-		DDA3937_RS10805	0.86	+2.3
2,433,380	-		DDA3937_RS10805	0.87	-0.7
2,433,422	-				-1.0
2,433,422	-				-0.7
2,433,423	+				-2.9
2,433,423	+				-0.3
2,433,424	-				+0.5
2,433,424	-				-2.6
2,433,424	-				+2.2
2,433,424	-				-0.4
2,433,424	-				-0.7
2,433,468	+				+1.4
2,433,468	+				+2.0
2,433,469	-				+0.8
2,433,469	-				-0.2
2,433,469	-				+0.0
2,433,469	-				+3.5
2,433,483	+				-0.7
2,433,483	+				-2.1
2,433,484	-				-1.0
2,433,484	-				-2.8
2,433,502	+				-0.4
2,433,505	-				+1.0
2,433,535	+				-1.6
2,433,536	-				+0.6
2,433,536	-				+1.4
2,433,539	+				-2.0
2,433,637	-				+0.6
2,433,653	+				+0.6
2,433,654	-				-3.1
2,433,661	+				-1.7
2,433,661	+				-0.4
2,433,661	+				-1.8
2,433,662	-				+0.5
2,433,662	-				-2.8
2,433,662	-				+0.4
2,433,662	-				+0.6
2,433,749	+				+0.3
2,433,750	-				-1.0
2,433,750	-				+2.7
2,433,750	-				-1.6
2,433,750	-				-0.7
2,433,750	-				+3.2
2,433,778	+				-1.2
2,433,779	-				-1.9
2,433,837	+				-2.5
2,433,840	+				-0.1
2,433,841	-				-1.2
2,433,878	+				-0.7
2,433,878	+				-1.0
2,433,878	+				+0.2
2,433,878	+				-0.4
2,433,879	-				-0.4
2,433,879	-				-0.1
2,433,907	+				+0.6
2,433,971	+		DDA3937_RS10810	0.14	-1.8
2,433,973	+		DDA3937_RS10810	0.14	+0.2
2,433,973	+		DDA3937_RS10810	0.14	-1.3
2,433,973	+		DDA3937_RS10810	0.14	-1.4
2,433,973	+		DDA3937_RS10810	0.14	-2.5
2,433,974	-		DDA3937_RS10810	0.14	-1.2
2,433,974	-		DDA3937_RS10810	0.14	+1.6
2,433,974	-		DDA3937_RS10810	0.14	+0.4
2,434,008	+		DDA3937_RS10810	0.16	-1.4
2,434,276	+		DDA3937_RS10810	0.36	+0.3
2,434,277	-		DDA3937_RS10810	0.36	+2.0
2,434,288	+		DDA3937_RS10810	0.36	-1.4
2,434,288	+		DDA3937_RS10810	0.36	-2.0
2,434,288	+		DDA3937_RS10810	0.36	+0.0
2,434,288	+		DDA3937_RS10810	0.36	-1.2
2,434,288	+		DDA3937_RS10810	0.36	+2.6
2,434,288	+		DDA3937_RS10810	0.36	-0.7
2,434,288	+		DDA3937_RS10810	0.36	-1.7
2,434,288	+		DDA3937_RS10810	0.36	+0.9
2,434,289	-		DDA3937_RS10810	0.36	-2.0
2,434,289	-		DDA3937_RS10810	0.36	+1.3
2,434,289	-		DDA3937_RS10810	0.36	-0.6
2,434,289	-		DDA3937_RS10810	0.36	-0.4
2,434,294	+		DDA3937_RS10810	0.37	+1.2
2,434,294	+		DDA3937_RS10810	0.37	-2.0
2,434,294	+		DDA3937_RS10810	0.37	+1.5
2,434,295	-		DDA3937_RS10810	0.37	-1.0
2,434,295	-		DDA3937_RS10810	0.37	-2.0
2,434,295	-		DDA3937_RS10810	0.37	+1.7
2,434,387	+		DDA3937_RS10810	0.43	-3.6
2,434,388	-		DDA3937_RS10810	0.44	+0.4
2,434,490	+		DDA3937_RS10810	0.51	+2.6
2,434,490	+		DDA3937_RS10810	0.51	-1.4
2,434,490	+		DDA3937_RS10810	0.51	-1.0
2,434,491	-		DDA3937_RS10810	0.51	+1.2
2,434,575	-		DDA3937_RS10810	0.57	-1.9
2,434,575	-		DDA3937_RS10810	0.57	-3.4
2,434,696	+		DDA3937_RS10810	0.65	-2.5
2,434,765	+		DDA3937_RS10810	0.70	-0.4
2,434,766	-		DDA3937_RS10810	0.70	+0.1
2,434,862	-		DDA3937_RS10810	0.77	-0.0
2,434,862	-		DDA3937_RS10810	0.77	+2.4
2,434,896	+		DDA3937_RS10810	0.80	-0.7
2,434,897	-		DDA3937_RS10810	0.80	+0.5
2,434,900	+				-0.4
2,434,900	+		DDA3937_RS10810	0.80	+0.2
2,434,900	+		DDA3937_RS10810	0.80	+3.1
2,434,900	+		DDA3937_RS10810	0.80	-1.6
2,434,900	+		DDA3937_RS10810	0.80	-1.7
2,434,900	+		DDA3937_RS10810	0.80	+0.3
2,434,900	+		DDA3937_RS10810	0.80	-1.7
2,434,900	+		DDA3937_RS10810	0.80	-1.0
2,434,900	+		DDA3937_RS10810	0.80	+3.1
2,434,900	+		DDA3937_RS10810	0.80	+0.4
2,434,900	+		DDA3937_RS10810	0.80	-2.6
2,434,900	+		DDA3937_RS10810	0.80	-0.5
2,434,900	+		DDA3937_RS10810	0.80	+2.4
2,434,900	+		DDA3937_RS10810	0.80	-2.0
2,434,900	+		DDA3937_RS10810	0.80	-0.4
2,434,901	-		DDA3937_RS10810	0.80	-0.5
2,434,901	-		DDA3937_RS10810	0.80	-1.4
2,434,901	-		DDA3937_RS10810	0.80	+0.4
2,434,901	-		DDA3937_RS10810	0.80	-2.8
2,434,901	-		DDA3937_RS10810	0.80	-0.7
2,434,901	-		DDA3937_RS10810	0.80	+0.3
2,434,901	-		DDA3937_RS10810	0.80	-2.2
2,434,901	-		DDA3937_RS10810	0.80	-0.4
2,434,901	-		DDA3937_RS10810	0.80	-0.1
2,434,904	+		DDA3937_RS10810	0.80	-0.2
2,434,905	-		DDA3937_RS10810	0.80	+1.3
2,434,905	-		DDA3937_RS10810	0.80	-1.8
2,434,910	-		DDA3937_RS10810	0.81	-2.6
2,434,929	-		DDA3937_RS10810	0.82	-0.8
2,434,929	-		DDA3937_RS10810	0.82	+2.2
2,434,969	+		DDA3937_RS10810	0.85	-1.2
2,434,969	+		DDA3937_RS10810	0.85	-0.7
2,434,981	+		DDA3937_RS10810	0.86	+2.2
2,434,981	+		DDA3937_RS10810	0.86	-2.2
2,434,981	+		DDA3937_RS10810	0.86	-2.5
2,434,981	+		DDA3937_RS10810	0.86	-2.0
2,434,981	+		DDA3937_RS10810	0.86	+1.1
2,434,981	+		DDA3937_RS10810	0.86	-0.3
2,434,981	+		DDA3937_RS10810	0.86	-1.0
2,434,982	-		DDA3937_RS10810	0.86	-3.0
2,434,982	-		DDA3937_RS10810	0.86	-1.3
2,434,985	+		DDA3937_RS10810	0.86	-1.7
2,434,985	+		DDA3937_RS10810	0.86	+0.3
2,434,985	+		DDA3937_RS10810	0.86	-1.1
2,434,985	+		DDA3937_RS10810	0.86	-1.4
2,434,985	+		DDA3937_RS10810	0.86	-2.4
2,434,985	+		DDA3937_RS10810	0.86	-2.1
2,434,985	+		DDA3937_RS10810	0.86	-2.3
2,434,985	+		DDA3937_RS10810	0.86	-1.4
2,434,985	+		DDA3937_RS10810	0.86	-0.7
2,434,985	+		DDA3937_RS10810	0.86	-1.8
2,434,985	+		DDA3937_RS10810	0.86	-2.4
2,434,985	+		DDA3937_RS10810	0.86	-0.0
2,434,985	+		DDA3937_RS10810	0.86	-0.7
2,434,985	+				-0.4
2,434,985	+		DDA3937_RS10810	0.86	-1.7
2,434,985	+		DDA3937_RS10810	0.86	+0.2
2,434,985	+		DDA3937_RS10810	0.86	+1.3
2,434,986	-		DDA3937_RS10810	0.86	-2.6
2,434,986	-				-0.4
2,434,986	-				+0.6
2,434,986	-		DDA3937_RS10810	0.86	+1.1
2,434,986	-		DDA3937_RS10810	0.86	-0.9
2,434,986	-		DDA3937_RS10810	0.86	+2.6
2,434,986	-				+0.6
2,434,986	-		DDA3937_RS10810	0.86	-1.4
2,434,986	-		DDA3937_RS10810	0.86	+0.4
2,434,987	+		DDA3937_RS10810	0.86	+2.0
2,434,987	+		DDA3937_RS10810	0.86	+0.9
2,434,987	+		DDA3937_RS10810	0.86	-2.4
2,434,987	+		DDA3937_RS10810	0.86	-2.1
2,434,988	-		DDA3937_RS10810	0.86	+2.1
2,434,988	-		DDA3937_RS10810	0.86	-1.6
2,435,145	+				-1.0
2,435,146	-				-0.4
2,435,160	+				-2.9
2,435,160	+				-1.1
2,435,160	+				-2.0
2,435,160	+				-1.2
2,435,161	-				+1.2
2,435,163	+				-1.6
2,435,237	+				+1.6
2,435,238	-				+0.0
2,435,245	+				-2.2
2,435,246	-				-1.4
2,435,246	-				-1.2
2,435,246	-				+0.4
2,435,295	-				-1.0
2,435,363	-		DDA3937_RS10815	0.13	-0.2
2,435,365	+		DDA3937_RS10815	0.13	+2.4
2,435,709	+		DDA3937_RS10815	0.38	-2.3
2,435,709	+		DDA3937_RS10815	0.38	-3.3
2,435,709	+		DDA3937_RS10815	0.38	-1.8
2,435,744	-		DDA3937_RS10815	0.41	-0.8
2,435,744	-		DDA3937_RS10815	0.41	-3.7
2,435,787	-		DDA3937_RS10815	0.44	+0.2
2,435,873	+		DDA3937_RS10815	0.50	+1.9
2,435,873	+		DDA3937_RS10815	0.50	-2.5
2,435,874	-		DDA3937_RS10815	0.51	-1.2
2,435,874	-				-0.7
2,435,874	-		DDA3937_RS10815	0.51	-2.3
2,435,887	+		DDA3937_RS10815	0.52	-0.7
2,435,887	+		DDA3937_RS10815	0.52	+1.4
2,435,887	+		DDA3937_RS10815	0.52	-0.8
2,435,887	+		DDA3937_RS10815	0.52	+2.9
2,435,887	+		DDA3937_RS10815	0.52	-2.3
2,435,887	+		DDA3937_RS10815	0.52	-2.5
2,435,887	+		DDA3937_RS10815	0.52	+1.6
2,435,887	+				-1.0
2,435,887	+		DDA3937_RS10815	0.52	-2.3
2,435,887	+		DDA3937_RS10815	0.52	-1.2
2,435,887	+		DDA3937_RS10815	0.52	-1.0
2,435,887	+		DDA3937_RS10815	0.52	+1.0
2,435,888	-		DDA3937_RS10815	0.52	+1.1
2,435,888	-		DDA3937_RS10815	0.52	-4.1
2,435,888	-		DDA3937_RS10815	0.52	-1.6
2,435,888	-		DDA3937_RS10815	0.52	-2.6
2,435,888	-		DDA3937_RS10815	0.52	+0.1
2,435,888	-		DDA3937_RS10815	0.52	-1.6
2,435,888	-				+0.0
2,435,888	-		DDA3937_RS10815	0.52	-3.8
2,435,888	-		DDA3937_RS10815	0.52	+0.4
2,435,888	-		DDA3937_RS10815	0.52	+2.2
2,435,888	-		DDA3937_RS10815	0.52	+2.7
2,435,888	-		DDA3937_RS10815	0.52	-1.0
2,435,892	-		DDA3937_RS10815	0.52	+1.5
2,436,024	+		DDA3937_RS10815	0.62	-1.6
2,436,025	-		DDA3937_RS10815	0.62	-1.0
2,436,025	-		DDA3937_RS10815	0.62	+0.3
2,436,036	+		DDA3937_RS10815	0.63	-1.7
2,436,053	+		DDA3937_RS10815	0.64	-1.3
2,436,053	+		DDA3937_RS10815	0.64	-1.0
2,436,060	+		DDA3937_RS10815	0.64	-1.7
2,436,060	+		DDA3937_RS10815	0.64	-0.4
2,436,061	-		DDA3937_RS10815	0.64	-3.0
2,436,061	-		DDA3937_RS10815	0.64	-1.0