Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10515

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,365,177	+		DDA3937_RS10510	0.10	-0.4
2,365,177	+		DDA3937_RS10510	0.10	+0.9
2,365,177	+		DDA3937_RS10510	0.10	+2.2
2,365,178	-		DDA3937_RS10510	0.10	-1.6
2,365,178	-		DDA3937_RS10510	0.10	+0.4
2,365,178	-		DDA3937_RS10510	0.10	-1.0
2,365,181	+		DDA3937_RS10510	0.11	-2.0
2,365,181	+		DDA3937_RS10510	0.11	-2.5
2,365,187	+		DDA3937_RS10510	0.12	+2.1
2,365,221	+		DDA3937_RS10510	0.16	+1.8
2,365,298	-		DDA3937_RS10510	0.26	-2.2
2,365,313	+				-0.4
2,365,314	-		DDA3937_RS10510	0.28	+1.8
2,365,328	-		DDA3937_RS10510	0.30	-0.8
2,365,367	+		DDA3937_RS10510	0.35	-1.4
2,365,473	+		DDA3937_RS10510	0.49	+2.4
2,365,567	-		DDA3937_RS10510	0.61	-0.6
2,365,667	+		DDA3937_RS10510	0.75	-0.7
2,365,667	+		DDA3937_RS10510	0.75	-2.0
2,365,667	+		DDA3937_RS10510	0.75	+3.2
2,365,667	+		DDA3937_RS10510	0.75	+1.3
2,365,668	-		DDA3937_RS10510	0.75	-1.1
2,365,668	-		DDA3937_RS10510	0.75	+0.4
2,365,766	+		DDA3937_RS10510	0.88	+2.2
2,365,818	+				+1.5
2,365,818	+				+0.0
2,365,818	+				+1.8
2,365,818	+				+1.2
2,365,818	+				-2.0
2,365,819	-				-3.8
2,365,821	+				-2.1
2,365,821	+				+3.0
2,365,822	-				-1.2
2,365,932	+				+2.6
2,365,933	-				-3.5
2,365,946	+				-1.0
2,365,947	-				-0.6
2,366,016	+				+1.6
2,366,016	+				+2.7
2,366,016	+				-0.7
2,366,016	+				+0.2
2,366,016	+				-1.6
2,366,017	-				+1.6
2,366,017	-				-0.2
2,366,020	+				+0.8
2,366,021	-				-2.1
2,366,021	-				-2.0
2,366,049	+				+1.7
2,366,054	+				-1.7
2,366,060	-				-1.4
2,366,114	+				-2.4
2,366,114	+				-0.7
2,366,114	+				-3.0
2,366,114	+				-2.3
2,366,114	+				+0.6
2,366,114	+				+0.8
2,366,114	+				-2.1
2,366,115	-				-1.2
2,366,115	-				-1.8
2,366,115	-				-1.4
2,366,115	-				-1.0
2,366,116	+				+1.1
2,366,117	-				-1.8
2,366,140	+				-2.4
2,366,152	+				-3.7
2,366,152	+				-1.7
2,366,153	-				-0.4
2,366,164	-				-1.8
2,366,234	+				-1.8
2,366,246	+				-2.1
2,366,247	-				-0.4
2,366,258	+		DDA3937_RS10515	0.11	+2.6
2,366,258	+		DDA3937_RS10515	0.11	-0.4
2,366,258	+		DDA3937_RS10515	0.11	+0.0
2,366,295	+		DDA3937_RS10515	0.14	-2.6
2,366,429	+		DDA3937_RS10515	0.27	-0.7
2,366,429	+		DDA3937_RS10515	0.27	-1.5
2,366,451	+		DDA3937_RS10515	0.29	-1.5
2,366,451	+		DDA3937_RS10515	0.29	-3.5
2,366,451	+		DDA3937_RS10515	0.29	+0.0
2,366,451	+		DDA3937_RS10515	0.29	-1.1
2,366,451	+		DDA3937_RS10515	0.29	-1.7
2,366,451	+		DDA3937_RS10515	0.29	-2.8
2,366,451	+		DDA3937_RS10515	0.29	-1.2
2,366,452	-				-0.4
2,366,452	-		DDA3937_RS10515	0.29	-1.8
2,366,491	+		DDA3937_RS10515	0.33	-1.1
2,366,491	+				-0.4
2,366,492	-		DDA3937_RS10515	0.33	+0.0
2,366,657	-		DDA3937_RS10515	0.49	-1.5
2,366,660	+		DDA3937_RS10515	0.49	+0.3
2,366,660	+		DDA3937_RS10515	0.49	-1.4
2,366,660	+		DDA3937_RS10515	0.49	-4.4
2,366,661	-		DDA3937_RS10515	0.49	+0.0
2,366,661	-		DDA3937_RS10515	0.49	-3.0
2,366,682	+		DDA3937_RS10515	0.51	-2.0
2,366,682	+				+0.0
2,366,684	+		DDA3937_RS10515	0.51	-1.7
2,366,684	+				+0.6
2,366,684	+		DDA3937_RS10515	0.51	-0.2
2,366,684	+		DDA3937_RS10515	0.51	-1.2
2,366,685	-		DDA3937_RS10515	0.52	-3.2
2,366,685	-		DDA3937_RS10515	0.52	-0.7
2,366,685	-		DDA3937_RS10515	0.52	-3.0
2,366,685	-		DDA3937_RS10515	0.52	-0.4
2,366,685	-		DDA3937_RS10515	0.52	+0.5
2,366,809	+		DDA3937_RS10515	0.63	-2.1
2,366,810	-		DDA3937_RS10515	0.64	-1.7
2,366,810	-		DDA3937_RS10515	0.64	-1.8
2,366,810	-		DDA3937_RS10515	0.64	-0.4
2,366,814	-		DDA3937_RS10515	0.64	-1.2
2,366,826	+		DDA3937_RS10515	0.65	+0.0
2,366,826	+		DDA3937_RS10515	0.65	-2.3
2,366,834	+		DDA3937_RS10515	0.66	-1.5
2,366,835	-		DDA3937_RS10515	0.66	-2.3
2,367,085	-		DDA3937_RS10515	0.90	-1.5
2,367,085	-		DDA3937_RS10515	0.90	+0.0
2,367,103	+				-2.7
2,367,193	+				-3.5
2,367,193	+				-1.5
2,367,204	+				+0.8
2,367,204	+				-2.3
2,367,204	+				+0.9
2,367,204	+				+0.4
2,367,205	-				-2.0
2,367,205	-				-1.4
2,367,209	-				-2.5
2,367,209	-				-2.3
2,367,218	+				-2.6
2,367,218	+				-1.4
2,367,218	+				-0.6
2,367,218	+				-0.4
2,367,218	+				-1.8
2,367,218	+				+2.3
2,367,219	-				-3.5
2,367,219	-				-0.8
2,367,219	-				-3.8
2,367,219	-				-2.2
2,367,219	-				+2.0
2,367,241	+				-3.9
2,367,241	+				-2.4
2,367,273	+				-0.1
2,367,313	-				-2.2
2,367,348	+				-3.3
2,367,369	+				-1.0
2,367,407	+				-2.5
2,367,530	+				-2.9
2,367,550	+				-0.2
2,367,551	-				-0.7
2,367,579	+				+0.6
2,367,590	+				-0.4
2,367,590	+				-0.5
2,367,591	-				+0.8
2,367,594	+				+0.5
2,367,606	+				-2.0
2,367,606	+				-2.2
2,367,606	+				-1.2
2,367,606	+				+2.1
2,367,606	+				-2.0
2,367,606	+				-1.8
2,367,606	+				+1.4
2,367,607	-				-2.1
2,367,607	-				-2.3
2,367,607	-				-1.2
2,367,653	+				-0.4
2,367,654	-				+0.0
2,367,664	+				+1.1
2,367,664	+				-2.1
2,367,664	+				-1.8
2,367,665	-				+1.5
2,367,665	-				-1.8
2,367,665	-				+0.0
2,367,665	-				-1.3
2,367,665	-				-0.5
2,367,665	-				+0.2
2,367,671	-				-0.8
2,367,697	+				+0.7
2,367,790	-		DDA3937_RS10520	0.23	-0.2
2,367,790	-		DDA3937_RS10520	0.23	+0.4
2,367,790	-		DDA3937_RS10520	0.23	+1.0
2,367,793	-		DDA3937_RS10520	0.24	-1.8
2,367,851	-		DDA3937_RS10520	0.36	-1.6
2,367,851	-		DDA3937_RS10520	0.36	-3.0
2,367,851	-		DDA3937_RS10520	0.36	+2.7
2,367,851	-		DDA3937_RS10520	0.36	+2.1
2,367,951	+		DDA3937_RS10520	0.56	-1.7
2,367,951	+		DDA3937_RS10520	0.56	-0.2
2,367,951	+		DDA3937_RS10520	0.56	+2.6
2,367,952	-		DDA3937_RS10520	0.56	+0.3
2,367,952	-		DDA3937_RS10520	0.56	+0.0
2,368,009	+		DDA3937_RS10520	0.68	+0.0
2,368,038	+		DDA3937_RS10520	0.74	-0.1
2,368,039	-		DDA3937_RS10520	0.74	-1.8
2,368,039	-		DDA3937_RS10520	0.74	-0.4
2,368,039	-		DDA3937_RS10520	0.74	+1.0