Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10380

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,338,961	+		DDA3937_RS10375	0.45	+3.8
2,338,962	-		DDA3937_RS10375	0.45	+0.9
2,338,962	-		DDA3937_RS10375	0.45	+1.7
2,338,971	+		DDA3937_RS10375	0.46	+4.4
2,338,971	+		DDA3937_RS10375	0.46	+4.0
2,338,971	+		DDA3937_RS10375	0.46	+4.3
2,338,971	+		DDA3937_RS10375	0.46	+4.6
2,338,971	+		DDA3937_RS10375	0.46	+3.8
2,338,972	-		DDA3937_RS10375	0.46	+3.3
2,338,972	-		DDA3937_RS10375	0.46	+3.6
2,338,972	-		DDA3937_RS10375	0.46	+3.2
2,338,972	-		DDA3937_RS10375	0.46	+3.0
2,338,972	-		DDA3937_RS10375	0.46	+3.3
2,338,972	-		DDA3937_RS10375	0.46	+3.7
2,338,972	-		DDA3937_RS10375	0.46	+3.9
2,339,037	+		DDA3937_RS10375	0.50	+3.9
2,339,037	+		DDA3937_RS10375	0.50	+4.1
2,339,037	+		DDA3937_RS10375	0.50	+3.9
2,339,037	+		DDA3937_RS10375	0.50	+3.8
2,339,037	+		DDA3937_RS10375	0.50	+4.1
2,339,037	+		DDA3937_RS10375	0.50	+4.0
2,339,037	+		DDA3937_RS10375	0.50	+3.7
2,339,037	+		DDA3937_RS10375	0.50	+4.0
2,339,037	+		DDA3937_RS10375	0.50	+3.4
2,339,037	+		DDA3937_RS10375	0.50	+4.1
2,339,037	+		DDA3937_RS10375	0.50	+4.4
2,339,037	+		DDA3937_RS10375	0.50	+4.0
2,339,037	+		DDA3937_RS10375	0.50	+3.8
2,339,037	+		DDA3937_RS10375	0.50	+3.9
2,339,037	+		DDA3937_RS10375	0.50	+4.0
2,339,037	+		DDA3937_RS10375	0.50	+4.2
2,339,037	+				+5.1
2,339,038	-		DDA3937_RS10375	0.50	+2.6
2,339,038	-		DDA3937_RS10375	0.50	+3.1
2,339,038	-		DDA3937_RS10375	0.50	+3.2
2,339,038	-		DDA3937_RS10375	0.50	+3.3
2,339,038	-		DDA3937_RS10375	0.50	+4.5
2,339,038	-		DDA3937_RS10375	0.50	+2.9
2,339,038	-		DDA3937_RS10375	0.50	+3.7
2,339,038	-		DDA3937_RS10375	0.50	+3.2
2,339,038	-		DDA3937_RS10375	0.50	+3.1
2,339,038	-		DDA3937_RS10375	0.50	+3.8
2,339,038	-		DDA3937_RS10375	0.50	+3.3
2,339,038	-		DDA3937_RS10375	0.50	+3.1
2,339,038	-		DDA3937_RS10375	0.50	+3.4
2,339,038	-		DDA3937_RS10375	0.50	+2.7
2,339,038	-		DDA3937_RS10375	0.50	+3.0
2,339,038	-		DDA3937_RS10375	0.50	+2.8
2,339,038	-		DDA3937_RS10375	0.50	+2.5
2,339,039	+		DDA3937_RS10375	0.50	+4.1
2,339,039	+		DDA3937_RS10375	0.50	+3.7
2,339,040	-		DDA3937_RS10375	0.50	+2.7
2,339,040	-		DDA3937_RS10375	0.50	+2.4
2,339,040	-		DDA3937_RS10375	0.50	+1.7
2,339,040	-		DDA3937_RS10375	0.50	+1.4
2,339,040	-		DDA3937_RS10375	0.50	+2.8
2,339,109	+		DDA3937_RS10375	0.54	+4.2
2,339,109	+		DDA3937_RS10375	0.54	+4.3
2,339,109	+		DDA3937_RS10375	0.54	+3.8
2,339,109	+		DDA3937_RS10375	0.54	+2.5
2,339,121	+		DDA3937_RS10375	0.55	+3.8
2,339,121	+		DDA3937_RS10375	0.55	+4.5
2,339,121	+		DDA3937_RS10375	0.55	+4.1
2,339,121	+		DDA3937_RS10375	0.55	+4.2
2,339,121	+		DDA3937_RS10375	0.55	+4.2
2,339,121	+		DDA3937_RS10375	0.55	+4.0
2,339,121	+		DDA3937_RS10375	0.55	+4.3
2,339,121	+		DDA3937_RS10375	0.55	+5.1
2,339,121	+		DDA3937_RS10375	0.55	+4.5
2,339,121	+		DDA3937_RS10375	0.55	+3.9
2,339,121	+		DDA3937_RS10375	0.55	+4.2
2,339,122	-		DDA3937_RS10375	0.55	+3.2
2,339,122	-		DDA3937_RS10375	0.55	+3.7
2,339,122	-		DDA3937_RS10375	0.55	+3.7
2,339,122	-		DDA3937_RS10375	0.55	+3.1
2,339,122	-		DDA3937_RS10375	0.55	+3.1
2,339,122	-		DDA3937_RS10375	0.55	+3.5
2,339,122	-		DDA3937_RS10375	0.55	+3.8
2,339,122	-		DDA3937_RS10375	0.55	+3.4
2,339,122	-		DDA3937_RS10375	0.55	+3.1
2,339,122	-		DDA3937_RS10375	0.55	+2.8
2,339,124	+		DDA3937_RS10375	0.55	+4.3
2,339,124	+		DDA3937_RS10375	0.55	+4.9
2,339,124	+		DDA3937_RS10375	0.55	+4.5
2,339,124	+		DDA3937_RS10375	0.55	+4.0
2,339,125	-		DDA3937_RS10375	0.55	+3.2
2,339,125	-		DDA3937_RS10375	0.55	+2.6
2,339,125	-		DDA3937_RS10375	0.55	+3.0
2,339,125	-		DDA3937_RS10375	0.55	+2.3
2,339,125	-		DDA3937_RS10375	0.55	+3.2
2,339,125	-		DDA3937_RS10375	0.55	+1.9
2,339,125	-		DDA3937_RS10375	0.55	+2.7
2,339,125	-		DDA3937_RS10375	0.55	+2.5
2,339,125	-		DDA3937_RS10375	0.55	+3.5
2,339,125	-		DDA3937_RS10375	0.55	+1.7
2,339,125	-		DDA3937_RS10375	0.55	+3.1
2,339,125	-		DDA3937_RS10375	0.55	+3.1
2,339,125	-		DDA3937_RS10375	0.55	+2.7
2,339,127	+		DDA3937_RS10375	0.55	+4.6
2,339,127	+		DDA3937_RS10375	0.55	+4.5
2,339,127	+		DDA3937_RS10375	0.55	+4.6
2,339,127	+		DDA3937_RS10375	0.55	+4.0
2,339,127	+		DDA3937_RS10375	0.55	+4.6
2,339,127	+		DDA3937_RS10375	0.55	+3.8
2,339,127	+		DDA3937_RS10375	0.55	+4.4
2,339,127	+		DDA3937_RS10375	0.55	+4.8
2,339,127	+		DDA3937_RS10375	0.55	+4.7
2,339,128	-		DDA3937_RS10375	0.55	+3.2
2,339,128	-		DDA3937_RS10375	0.55	+2.9
2,339,128	-		DDA3937_RS10375	0.55	+0.5
2,339,128	-		DDA3937_RS10375	0.55	+2.6
2,339,128	-		DDA3937_RS10375	0.55	+3.2
2,339,128	-		DDA3937_RS10375	0.55	+3.2
2,339,128	-		DDA3937_RS10375	0.55	+4.1
2,339,186	-		DDA3937_RS10375	0.59	+3.9
2,339,186	-		DDA3937_RS10375	0.59	+2.6
2,339,265	+		DDA3937_RS10375	0.64	+4.0
2,339,265	+		DDA3937_RS10375	0.64	+4.4
2,339,265	+		DDA3937_RS10375	0.64	+4.3
2,339,266	-		DDA3937_RS10375	0.64	+3.2
2,339,266	-		DDA3937_RS10375	0.64	+3.5
2,339,266	-		DDA3937_RS10375	0.64	+3.3
2,339,330	+		DDA3937_RS10375	0.67	+4.9
2,339,331	-		DDA3937_RS10375	0.68	+2.3
2,339,331	-		DDA3937_RS10375	0.68	+2.4
2,339,403	+		DDA3937_RS10375	0.72	+5.1
2,339,403	+		DDA3937_RS10375	0.72	+4.2
2,339,403	+		DDA3937_RS10375	0.72	+4.1
2,339,404	-		DDA3937_RS10375	0.72	+3.6
2,339,404	-		DDA3937_RS10375	0.72	+3.5
2,339,404	-		DDA3937_RS10375	0.72	+3.5
2,339,404	-		DDA3937_RS10375	0.72	+2.6
2,339,404	-		DDA3937_RS10375	0.72	+3.5
2,339,404	-		DDA3937_RS10375	0.72	-0.7
2,339,468	-		DDA3937_RS10375	0.76	+2.3
2,339,568	+		DDA3937_RS10375	0.82	+5.1
2,339,568	+		DDA3937_RS10375	0.82	+4.4
2,339,568	+		DDA3937_RS10375	0.82	+5.1
2,339,568	+		DDA3937_RS10375	0.82	+3.8
2,339,568	+		DDA3937_RS10375	0.82	+4.4
2,339,568	+		DDA3937_RS10375	0.82	+4.0
2,339,568	+		DDA3937_RS10375	0.82	+4.2
2,339,569	-		DDA3937_RS10375	0.82	+2.8
2,339,569	-		DDA3937_RS10375	0.82	+2.0
2,339,569	-		DDA3937_RS10375	0.82	+3.2
2,339,569	-		DDA3937_RS10375	0.82	+3.5
2,339,569	-		DDA3937_RS10375	0.82	+2.8
2,339,569	-		DDA3937_RS10375	0.82	+3.9
2,339,569	-		DDA3937_RS10375	0.82	+2.3
2,339,631	+		DDA3937_RS10375	0.86	+5.0
2,339,631	+		DDA3937_RS10375	0.86	+4.6
2,339,631	+		DDA3937_RS10375	0.86	+4.2
2,339,631	+		DDA3937_RS10375	0.86	+4.3
2,339,632	-		DDA3937_RS10375	0.86	+3.3
2,339,632	-		DDA3937_RS10375	0.86	+2.7
2,339,632	-		DDA3937_RS10375	0.86	+3.3
2,339,632	-		DDA3937_RS10375	0.86	+4.6
2,339,632	-		DDA3937_RS10375	0.86	+2.8
2,339,632	-		DDA3937_RS10375	0.86	+2.4
2,339,706	+				+4.5
2,339,706	+				+4.8
2,339,706	+				+4.5
2,339,706	+				+4.3
2,339,707	-				+3.7
2,339,757	+				+4.0
2,339,760	+				+5.0
2,339,760	+				+4.0
2,339,760	+				+4.3
2,339,760	+				+3.9
2,339,760	+				+1.9
2,339,760	+				+4.4
2,339,760	+				+4.4
2,339,760	+				+5.2
2,339,760	+				+4.2
2,339,760	+				+4.4
2,339,761	-				+3.1
2,339,761	-				+2.9
2,339,761	-				+2.3
2,339,763	+				+0.2
2,339,763	+				+4.5
2,339,763	+				+4.6
2,339,763	+				+4.3
2,339,764	-				+2.2
2,339,784	-				+2.9
2,339,790	+				+4.6
2,339,791	-				+4.6
2,339,791	-				+3.2
2,339,863	-				+3.1
2,339,943	-				+3.7
2,339,944	+				+5.2
2,339,945	-				+5.1
2,339,945	-				+3.9
2,339,945	-				+3.7
2,339,945	-				+4.0
2,339,948	+				+3.9
2,339,948	+				+2.4
2,339,948	+				+3.8
2,339,948	+				+4.1
2,339,948	+				+4.2
2,339,948	+				+3.8
2,339,948	+				+4.3
2,339,948	+				+4.2
2,339,949	-				+4.2
2,339,949	-				+3.9
2,339,949	-				+4.1
2,339,949	-				+4.1
2,339,949	-				+3.9
2,339,961	-				+3.5
2,339,961	-				+4.0
2,340,015	+				+4.0
2,340,015	+				+3.9
2,340,015	+				+4.0
2,340,016	-				+3.9
2,340,016	-				+3.7
2,340,016	-				+3.5
2,340,016	-				+3.5
2,340,016	-				+3.6
2,340,090	+		DDA3937_RS10380	0.15	+4.2
2,340,112	+		DDA3937_RS10380	0.17	+3.8
2,340,112	+		DDA3937_RS10380	0.17	+4.4
2,340,112	+		DDA3937_RS10380	0.17	+3.8
2,340,112	+		DDA3937_RS10380	0.17	+4.4
2,340,112	+		DDA3937_RS10380	0.17	+5.0
2,340,113	-		DDA3937_RS10380	0.17	+3.9
2,340,115	-		DDA3937_RS10380	0.17	+3.4
2,340,142	+		DDA3937_RS10380	0.20	+4.2
2,340,142	+		DDA3937_RS10380	0.20	+3.0
2,340,142	+		DDA3937_RS10380	0.20	+4.2
2,340,142	+		DDA3937_RS10380	0.20	+5.0
2,340,143	-		DDA3937_RS10380	0.20	+4.2
2,340,143	-		DDA3937_RS10380	0.20	+3.2
2,340,143	-		DDA3937_RS10380	0.20	+3.6
2,340,147	+		DDA3937_RS10380	0.21	+4.1
2,340,147	+		DDA3937_RS10380	0.21	+3.8
2,340,147	+		DDA3937_RS10380	0.21	+4.2
2,340,148	-		DDA3937_RS10380	0.21	+2.1
2,340,148	-		DDA3937_RS10380	0.21	+2.7
2,340,148	-		DDA3937_RS10380	0.21	+3.6
2,340,151	+		DDA3937_RS10380	0.21	+4.1
2,340,151	+		DDA3937_RS10380	0.21	+3.7
2,340,151	+		DDA3937_RS10380	0.21	+4.2
2,340,151	+		DDA3937_RS10380	0.21	+4.3
2,340,151	+		DDA3937_RS10380	0.21	+4.1
2,340,151	+		DDA3937_RS10380	0.21	+2.6
2,340,151	+		DDA3937_RS10380	0.21	+4.3
2,340,151	+		DDA3937_RS10380	0.21	+4.2
2,340,151	+		DDA3937_RS10380	0.21	+4.0
2,340,152	-		DDA3937_RS10380	0.21	+3.5
2,340,152	-		DDA3937_RS10380	0.21	+3.5
2,340,152	-		DDA3937_RS10380	0.21	+3.4
2,340,196	+		DDA3937_RS10380	0.26	+5.0
2,340,196	+		DDA3937_RS10380	0.26	+4.1
2,340,196	+		DDA3937_RS10380	0.26	+3.6
2,340,205	+		DDA3937_RS10380	0.27	+3.7
2,340,330	+		DDA3937_RS10380	0.41	+3.1
2,340,331	-		DDA3937_RS10380	0.41	+3.4
2,340,331	-		DDA3937_RS10380	0.41	+1.4
2,340,331	-		DDA3937_RS10380	0.41	+3.3
2,340,340	+		DDA3937_RS10380	0.42	+4.3
2,340,340	+		DDA3937_RS10380	0.42	+4.4
2,340,341	-		DDA3937_RS10380	0.42	+2.3
2,340,341	-		DDA3937_RS10380	0.42	+3.7
2,340,341	-		DDA3937_RS10380	0.42	+3.4
2,340,341	-		DDA3937_RS10380	0.42	+3.2
2,340,472	+		DDA3937_RS10380	0.56	+4.4
2,340,472	+		DDA3937_RS10380	0.56	+4.5
2,340,472	+		DDA3937_RS10380	0.56	+4.1
2,340,472	+		DDA3937_RS10380	0.56	+4.2
2,340,472	+		DDA3937_RS10380	0.56	+4.3
2,340,472	+		DDA3937_RS10380	0.56	+3.4
2,340,473	-		DDA3937_RS10380	0.56	+1.2
2,340,473	-		DDA3937_RS10380	0.56	+3.3
2,340,473	-		DDA3937_RS10380	0.56	+3.3
2,340,474	+		DDA3937_RS10380	0.56	+4.3
2,340,508	+		DDA3937_RS10380	0.60	+4.2
2,340,508	+		DDA3937_RS10380	0.60	+4.1
2,340,508	+		DDA3937_RS10380	0.60	+3.7
2,340,508	+		DDA3937_RS10380	0.60	+4.4
2,340,508	+		DDA3937_RS10380	0.60	+4.2
2,340,508	+		DDA3937_RS10380	0.60	+4.4
2,340,508	+		DDA3937_RS10380	0.60	+4.2
2,340,508	+		DDA3937_RS10380	0.60	+4.3
2,340,508	+		DDA3937_RS10380	0.60	+4.1
2,340,508	+		DDA3937_RS10380	0.60	+4.0
2,340,509	-		DDA3937_RS10380	0.60	+3.9
2,340,509	-		DDA3937_RS10380	0.60	+3.3
2,340,509	-		DDA3937_RS10380	0.60	+3.2
2,340,509	-		DDA3937_RS10380	0.60	+4.1
2,340,509	-		DDA3937_RS10380	0.60	+3.2
2,340,509	-		DDA3937_RS10380	0.60	+3.5
2,340,509	-		DDA3937_RS10380	0.60	+3.6
2,340,509	-		DDA3937_RS10380	0.60	+3.2
2,340,509	-		DDA3937_RS10380	0.60	+5.7
2,340,509	-		DDA3937_RS10380	0.60	+3.0
2,340,509	-		DDA3937_RS10380	0.60	+3.3
2,340,509	-		DDA3937_RS10380	0.60	+2.9
2,340,509	-		DDA3937_RS10380	0.60	+3.4
2,340,509	-		DDA3937_RS10380	0.60	+3.0
2,340,509	-		DDA3937_RS10380	0.60	+2.6
2,340,509	-		DDA3937_RS10380	0.60	+4.5
2,340,509	-		DDA3937_RS10380	0.60	+3.5
2,340,509	-		DDA3937_RS10380	0.60	+3.6
2,340,510	+		DDA3937_RS10380	0.60	+3.9
2,340,510	+		DDA3937_RS10380	0.60	+4.4
2,340,511	-		DDA3937_RS10380	0.60	+2.9
2,340,511	-		DDA3937_RS10380	0.60	+2.1
2,340,528	+		DDA3937_RS10380	0.62	+4.1
2,340,528	+		DDA3937_RS10380	0.62	+4.3
2,340,529	-		DDA3937_RS10380	0.62	+3.3
2,340,529	-		DDA3937_RS10380	0.62	+2.5
2,340,531	+		DDA3937_RS10380	0.62	+4.2
2,340,531	+		DDA3937_RS10380	0.62	+4.6
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