Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09450

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,128,977	-				-1.0
2,128,992	+				+0.3
2,128,992	+				-3.8
2,128,993	-				-0.3
2,128,993	-				-1.6
2,128,993	-				+0.8
2,128,993	-				-2.1
2,128,993	-				+0.0
2,128,993	-				-1.0
2,129,043	+				+2.0
2,129,043	+				-1.2
2,129,044	-				+0.6
2,129,044	-				+0.6
2,129,044	-				-3.1
2,129,053	+				-1.6
2,129,053	+				-1.2
2,129,054	-				-3.0
2,129,054	-				+2.2
2,129,054	-				-0.4
2,129,054	-				-0.4
2,129,085	+				+0.2
2,129,086	-				+0.0
2,129,125	+				-2.4
2,129,125	+				-2.5
2,129,125	+				-1.6
2,129,125	+				-1.2
2,129,125	+				-2.3
2,129,125	+				+0.4
2,129,125	+				-1.2
2,129,125	+				+1.6
2,129,126	-				+2.7
2,129,126	-				+1.6
2,129,126	-				-1.2
2,129,127	+				+1.5
2,129,127	+				-1.6
2,129,127	+				+0.9
2,129,127	+				-1.6
2,129,127	+				+1.7
2,129,127	+				-1.7
2,129,127	+				+1.4
2,129,127	+				-1.8
2,129,127	+				-1.2
2,129,127	+				-1.0
2,129,128	-				+2.3
2,129,128	-				+0.5
2,129,128	-				-2.9
2,129,128	-				+0.3
2,129,128	-				+2.0
2,129,128	-				-2.2
2,129,128	-				+0.1
2,129,128	-				-0.7
2,129,128	-				+1.4
2,129,128	-				+2.6
2,129,128	-				+0.5
2,129,128	-				-1.2
2,129,128	-				+1.0
2,129,139	-				-0.4
2,129,225	-				-2.6
2,129,398	+		DDA3937_RS09445	0.23	-1.6
2,129,398	+		DDA3937_RS09445	0.23	-0.7
2,129,500	-		DDA3937_RS09445	0.37	+1.3
2,129,677	+		DDA3937_RS09445	0.62	+0.7
2,129,678	-		DDA3937_RS09445	0.62	-1.5
2,129,696	-		DDA3937_RS09445	0.64	-2.9
2,129,805	+		DDA3937_RS09445	0.79	-1.0
2,129,806	-		DDA3937_RS09445	0.79	-2.1
2,129,806	-		DDA3937_RS09445	0.79	+0.0
2,129,817	-		DDA3937_RS09445	0.81	-2.3
2,129,826	+		DDA3937_RS09445	0.82	+0.5
2,129,826	+		DDA3937_RS09445	0.82	+2.7
2,129,827	-		DDA3937_RS09445	0.82	-1.4
2,129,827	-		DDA3937_RS09445	0.82	-2.0
2,129,829	+		DDA3937_RS09445	0.83	+1.4
2,129,923	-				-2.0
2,130,078	+				+0.0
2,130,078	+		DDA3937_RS09450	0.12	+0.3
2,130,078	+		DDA3937_RS09450	0.12	-2.8
2,130,078	+		DDA3937_RS09450	0.12	-1.3
2,130,078	+		DDA3937_RS09450	0.12	+0.4
2,130,079	-		DDA3937_RS09450	0.12	-2.3
2,130,079	-		DDA3937_RS09450	0.12	-1.6
2,130,080	+				+1.6
2,130,080	+		DDA3937_RS09450	0.13	+1.2
2,130,081	-		DDA3937_RS09450	0.13	-0.3
2,130,081	-		DDA3937_RS09450	0.13	-0.3
2,130,090	-		DDA3937_RS09450	0.14	-1.6
2,130,090	-		DDA3937_RS09450	0.14	+0.7
2,130,138	+		DDA3937_RS09450	0.19	+0.6
2,130,138	+		DDA3937_RS09450	0.19	+1.6
2,130,138	+		DDA3937_RS09450	0.19	+2.2
2,130,138	+		DDA3937_RS09450	0.19	+1.7
2,130,139	-		DDA3937_RS09450	0.19	-0.4
2,130,174	-		DDA3937_RS09450	0.23	+1.2
2,130,180	+		DDA3937_RS09450	0.24	+2.1
2,130,181	-		DDA3937_RS09450	0.24	-0.7
2,130,181	-		DDA3937_RS09450	0.24	-1.0
2,130,234	-		DDA3937_RS09450	0.30	-1.1
2,130,300	-		DDA3937_RS09450	0.37	-0.1
2,130,401	+		DDA3937_RS09450	0.48	+1.2
2,130,501	+		DDA3937_RS09450	0.59	+2.6
2,130,501	+		DDA3937_RS09450	0.59	-0.4
2,130,501	+		DDA3937_RS09450	0.59	+0.4
2,130,501	+		DDA3937_RS09450	0.59	-2.0
2,130,501	+		DDA3937_RS09450	0.59	-1.6
2,130,502	-		DDA3937_RS09450	0.59	-2.2
2,130,502	-		DDA3937_RS09450	0.59	+0.8
2,130,502	-		DDA3937_RS09450	0.59	+0.9
2,130,502	-		DDA3937_RS09450	0.59	-1.9
2,130,527	+		DDA3937_RS09450	0.62	-1.7
2,130,710	+		DDA3937_RS09450	0.82	+0.3
2,130,710	+		DDA3937_RS09450	0.82	+2.5
2,130,710	+		DDA3937_RS09450	0.82	-1.6
2,130,710	+		DDA3937_RS09450	0.82	-0.9
2,130,710	+		DDA3937_RS09450	0.82	+1.1
2,130,710	+		DDA3937_RS09450	0.82	+0.2
2,130,711	-		DDA3937_RS09450	0.82	-1.4
2,130,711	-		DDA3937_RS09450	0.82	+3.2
2,130,711	-		DDA3937_RS09450	0.82	-1.4
2,130,711	-		DDA3937_RS09450	0.82	-1.9
2,130,711	-		DDA3937_RS09450	0.82	+0.6
2,130,711	-		DDA3937_RS09450	0.82	-0.6
2,130,711	-		DDA3937_RS09450	0.82	+0.0
2,130,711	-		DDA3937_RS09450	0.82	+2.1
2,130,712	+		DDA3937_RS09450	0.83	-0.4
2,130,712	+		DDA3937_RS09450	0.83	-2.0
2,130,712	+		DDA3937_RS09450	0.83	-1.7
2,130,713	-		DDA3937_RS09450	0.83	-0.7
2,130,713	-		DDA3937_RS09450	0.83	-0.3
2,130,819	+				-1.9
2,130,819	+				-2.2
2,130,944	+				-1.9
2,130,944	+				-1.9
2,130,944	+				-0.4
2,130,945	-				-0.4
2,130,945	-				-0.4
2,130,945	-				+0.6
2,130,966	+				+0.6
2,130,966	+				-1.9
2,130,966	+				-2.6
2,130,966	+				-1.9
2,130,994	+				+1.1
2,130,994	+				+2.4
2,130,994	+				-0.8
2,130,994	+				-2.0
2,130,995	-				+0.0
2,131,075	+		DDA3937_RS09455	0.14	+0.3
2,131,075	+		DDA3937_RS09455	0.14	+0.2
2,131,076	-				-1.0
2,131,146	+		DDA3937_RS09455	0.29	+2.2
2,131,146	+		DDA3937_RS09455	0.29	-2.3
2,131,468	-				+0.5
2,131,527	-				-1.6
2,131,547	-				-2.1
2,131,547	-				-1.0
2,131,611	+				+0.8
2,131,611	+				+0.9
2,131,611	+				+3.1
2,131,611	+				+3.5
2,131,611	+				+0.5
2,131,615	+				+0.3
2,131,626	+				-1.9
2,131,627	-				-2.7
2,131,627	-				+0.1
2,131,630	+				-0.9
2,131,674	+				-0.7
2,131,686	+				-3.0
2,131,687	-				+2.4
2,131,693	+				+0.9
2,131,694	-				-2.0
2,131,701	+				+2.0
2,131,702	-				+0.5
2,131,760	+				-2.6
2,131,761	-				-2.0
2,131,826	+				+1.2
2,131,827	-				+2.7
2,131,827	-				+2.4
2,131,839	+				+0.6
2,131,840	-				-2.0
2,131,840	-				+0.0
2,131,840	-				+1.3
2,131,840	-				-2.5
2,131,840	-				-1.2
2,131,841	+				+0.7
2,131,841	+				-0.0
2,131,841	+				+0.3
2,131,842	-				+1.6
2,131,842	-				-3.4
2,131,842	-				-3.5
2,131,842	-				-1.4
2,131,842	-				-1.6
2,131,842	-				-1.2
2,131,846	-				+1.6
2,131,855	+				-2.6
2,131,855	+				+0.9