Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09265

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,081,823	+		DDA3937_RS09260	0.31	-1.3
2,081,824	-		DDA3937_RS09260	0.31	-1.0
2,081,828	-		DDA3937_RS09260	0.32	+0.0
2,081,828	-		DDA3937_RS09260	0.32	+1.1
2,081,838	+		DDA3937_RS09260	0.33	-2.5
2,081,839	-		DDA3937_RS09260	0.33	-1.1
2,081,839	-		DDA3937_RS09260	0.33	-2.2
2,081,839	-		DDA3937_RS09260	0.33	-0.7
2,081,912	+		DDA3937_RS09260	0.41	+0.4
2,081,912	+		DDA3937_RS09260	0.41	+0.8
2,081,912	+		DDA3937_RS09260	0.41	-3.9
2,081,912	+		DDA3937_RS09260	0.41	-3.1
2,081,913	-		DDA3937_RS09260	0.42	-1.5
2,081,913	-		DDA3937_RS09260	0.42	-0.7
2,081,913	-		DDA3937_RS09260	0.42	-1.4
2,081,914	+		DDA3937_RS09260	0.42	-1.0
2,081,914	+		DDA3937_RS09260	0.42	+2.2
2,081,914	+		DDA3937_RS09260	0.42	+1.4
2,081,914	+		DDA3937_RS09260	0.42	-0.7
2,081,915	-		DDA3937_RS09260	0.42	-0.7
2,081,915	-		DDA3937_RS09260	0.42	+0.1
2,081,915	-		DDA3937_RS09260	0.42	-1.6
2,081,915	-		DDA3937_RS09260	0.42	-0.0
2,081,915	-		DDA3937_RS09260	0.42	-0.3
2,081,915	-		DDA3937_RS09260	0.42	-1.1
2,081,915	-		DDA3937_RS09260	0.42	-4.1
2,081,925	+		DDA3937_RS09260	0.43	+1.4
2,081,925	+		DDA3937_RS09260	0.43	-2.8
2,081,925	+		DDA3937_RS09260	0.43	-3.1
2,082,082	-		DDA3937_RS09260	0.61	+0.0
2,082,343	+				+0.6
2,082,343	+				-0.0
2,082,343	+				-2.6
2,082,344	-				+1.0
2,082,372	-				-3.2
2,082,420	+				+0.6
2,082,421	-				+0.6
2,082,424	+				+1.5
2,082,424	+				-1.9
2,082,424	+				-3.3
2,082,424	+				-0.7
2,082,424	+				-2.1
2,082,425	-				-0.7
2,082,480	+				+0.0
2,082,480	+				-1.4
2,082,480	+				-0.6
2,082,480	+				-0.4
2,082,497	+				+0.4
2,082,510	+				+0.1
2,082,510	+				+1.3
2,082,510	+				-2.0
2,082,510	+				-0.4
2,082,511	-				+0.0
2,082,512	+				-1.9
2,082,512	+				+0.6
2,082,552	+				-2.6
2,082,553	-				-2.6
2,082,588	+				+0.8
2,082,589	-				-0.7
2,082,761	+		DDA3937_RS09265	0.11	-2.4
2,082,762	-		DDA3937_RS09265	0.12	-0.4
2,082,762	-		DDA3937_RS09265	0.12	+0.6
2,082,785	+		DDA3937_RS09265	0.13	-1.2
2,082,785	+		DDA3937_RS09265	0.13	+1.0
2,082,786	-		DDA3937_RS09265	0.13	-0.7
2,082,851	+		DDA3937_RS09265	0.18	-1.7
2,082,851	+		DDA3937_RS09265	0.18	-0.5
2,082,851	+		DDA3937_RS09265	0.18	+2.4
2,082,851	+		DDA3937_RS09265	0.18	+0.4
2,082,851	+		DDA3937_RS09265	0.18	-3.4
2,082,852	-		DDA3937_RS09265	0.18	-1.2
2,082,852	-		DDA3937_RS09265	0.18	-1.6
2,082,852	-		DDA3937_RS09265	0.18	-0.2
2,082,864	-		DDA3937_RS09265	0.18	+0.9
2,082,864	-		DDA3937_RS09265	0.18	+1.2
2,082,902	+		DDA3937_RS09265	0.21	+0.8
2,082,908	+		DDA3937_RS09265	0.21	+1.1
2,082,908	+		DDA3937_RS09265	0.21	+2.4
2,082,909	-		DDA3937_RS09265	0.21	+1.6
2,083,005	+		DDA3937_RS09265	0.28	+0.9
2,083,034	+		DDA3937_RS09265	0.30	+0.0
2,083,034	+		DDA3937_RS09265	0.30	+0.0
2,083,034	+		DDA3937_RS09265	0.30	-1.4
2,083,034	+		DDA3937_RS09265	0.30	-1.5
2,083,034	+		DDA3937_RS09265	0.30	-2.1
2,083,034	+		DDA3937_RS09265	0.30	+1.2
2,083,035	-		DDA3937_RS09265	0.30	-1.1
2,083,035	-		DDA3937_RS09265	0.30	+1.1
2,083,035	-		DDA3937_RS09265	0.30	-3.3
2,083,035	-		DDA3937_RS09265	0.30	+0.0
2,083,035	-		DDA3937_RS09265	0.30	-0.7
2,083,035	-		DDA3937_RS09265	0.30	+1.3
2,083,084	+		DDA3937_RS09265	0.33	-0.7
2,083,084	+		DDA3937_RS09265	0.33	-2.0
2,083,084	+		DDA3937_RS09265	0.33	+1.6
2,083,139	-		DDA3937_RS09265	0.37	-1.6
2,083,171	+		DDA3937_RS09265	0.39	-2.4
2,083,171	+		DDA3937_RS09265	0.39	-0.7
2,083,217	-		DDA3937_RS09265	0.42	-1.2
2,083,217	-		DDA3937_RS09265	0.42	-1.6
2,083,355	+		DDA3937_RS09265	0.51	+1.9
2,083,355	+		DDA3937_RS09265	0.51	-1.4
2,083,355	+		DDA3937_RS09265	0.51	-1.0
2,083,355	+		DDA3937_RS09265	0.51	-1.9
2,083,356	-		DDA3937_RS09265	0.51	+0.8
2,083,356	-		DDA3937_RS09265	0.51	+1.0
2,083,356	-		DDA3937_RS09265	0.51	-1.2
2,083,357	+		DDA3937_RS09265	0.52	-2.2
2,083,358	-		DDA3937_RS09265	0.52	-1.7
2,083,394	+		DDA3937_RS09265	0.54	+0.1
2,083,395	-		DDA3937_RS09265	0.54	-0.1
2,083,547	+		DDA3937_RS09265	0.64	+1.8
2,083,547	+		DDA3937_RS09265	0.64	+1.8
2,083,547	+		DDA3937_RS09265	0.64	+2.1
2,083,547	+		DDA3937_RS09265	0.64	-1.0
2,083,548	-		DDA3937_RS09265	0.64	-0.7
2,083,548	-		DDA3937_RS09265	0.64	-1.7
2,083,548	-		DDA3937_RS09265	0.64	+1.6
2,083,548	-		DDA3937_RS09265	0.64	-0.5
2,083,548	-		DDA3937_RS09265	0.64	-1.3
2,083,548	-		DDA3937_RS09265	0.64	-2.3
2,083,548	-		DDA3937_RS09265	0.64	+2.0
2,083,548	-		DDA3937_RS09265	0.64	+1.1
2,083,561	+		DDA3937_RS09265	0.65	-0.2
2,083,562	-		DDA3937_RS09265	0.65	-0.2
2,083,571	-		DDA3937_RS09265	0.66	-0.7
2,083,646	+		DDA3937_RS09265	0.71	+0.3
2,083,646	+		DDA3937_RS09265	0.71	-1.9
2,083,710	-		DDA3937_RS09265	0.75	-0.7
2,083,710	-		DDA3937_RS09265	0.75	-0.6
2,083,726	+		DDA3937_RS09265	0.76	-2.9
2,083,801	+		DDA3937_RS09265	0.81	+0.4
2,083,802	-		DDA3937_RS09265	0.81	+1.6
2,083,802	-		DDA3937_RS09265	0.81	-1.3
2,083,875	+		DDA3937_RS09265	0.86	+0.8
2,083,875	+		DDA3937_RS09265	0.86	+0.4
2,083,876	-		DDA3937_RS09265	0.86	-1.0
2,083,888	+		DDA3937_RS09265	0.87	-1.2
2,083,888	+		DDA3937_RS09265	0.87	+2.3
2,083,891	+		DDA3937_RS09265	0.87	+0.8
2,083,892	-		DDA3937_RS09265	0.88	-2.7
2,083,907	+		DDA3937_RS09265	0.89	-2.4
2,083,907	+		DDA3937_RS09265	0.89	+1.9
2,083,908	-		DDA3937_RS09265	0.89	+1.1
2,083,908	-		DDA3937_RS09265	0.89	-0.4
2,083,908	-		DDA3937_RS09265	0.89	+2.1
2,083,958	+				-3.2
2,083,958	+				+1.9
2,083,958	+				+1.0
2,083,958	+				+0.6
2,083,958	+				+0.8
2,083,959	-				-1.0
2,083,959	-				+0.0
2,083,959	-				+0.0
2,084,007	+				+1.2
2,084,007	+				+2.4
2,084,007	+				-1.2
2,084,007	+				+1.9
2,084,056	+				+0.8
2,084,056	+				+2.1
2,084,057	-				+1.0
2,084,071	+				-1.6
2,084,071	+				+0.2
2,084,071	+				+3.3
2,084,072	-				+0.9
2,084,072	-				+1.0
2,084,072	-				-1.2
2,084,072	-				+0.3
2,084,072	-				-0.3
2,084,072	-				-1.4
2,084,075	+				+1.0
2,084,138	-				+2.1
2,084,174	-				-0.1
2,084,204	-				+0.5
2,084,247	-				-3.5
2,084,256	+				-1.2
2,084,257	-				-0.4
2,084,505	+		DDA3937_RS09270	0.29	-1.7
2,084,553	-		DDA3937_RS09270	0.33	+0.0
2,084,559	+		DDA3937_RS09270	0.34	-1.2
2,084,560	-		DDA3937_RS09270	0.34	-2.6
2,084,560	-		DDA3937_RS09270	0.34	-2.7
2,084,652	+		DDA3937_RS09270	0.42	+0.2
2,084,654	+		DDA3937_RS09270	0.42	-1.7
2,084,654	+		DDA3937_RS09270	0.42	-1.4
2,084,654	+		DDA3937_RS09270	0.42	-2.0
2,084,654	+		DDA3937_RS09270	0.42	-1.9
2,084,654	+		DDA3937_RS09270	0.42	-1.7
2,084,655	-		DDA3937_RS09270	0.42	+1.3
2,084,655	-		DDA3937_RS09270	0.42	-1.9
2,084,655	-		DDA3937_RS09270	0.42	-0.9
2,084,655	-		DDA3937_RS09270	0.42	-2.5
2,084,655	-		DDA3937_RS09270	0.42	-0.9
2,084,655	-		DDA3937_RS09270	0.42	-1.2
2,084,655	-		DDA3937_RS09270	0.42	+1.4
2,084,655	-		DDA3937_RS09270	0.42	+1.6
2,084,660	+		DDA3937_RS09270	0.42	-2.6
2,084,660	+		DDA3937_RS09270	0.42	-3.3
2,084,661	-		DDA3937_RS09270	0.42	-1.3
2,084,703	-		DDA3937_RS09270	0.46	-2.1
2,084,707	-		DDA3937_RS09270	0.46	-1.9
2,084,859	-		DDA3937_RS09270	0.59	-1.6
2,084,859	-		DDA3937_RS09270	0.59	-1.2
2,085,030	+		DDA3937_RS09270	0.73	-0.6
2,085,043	-				+3.4