Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08810

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,990,871	+		DDA3937_RS08800	0.88	+0.1
1,990,871	+		DDA3937_RS08800	0.88	-1.9
1,990,872	-		DDA3937_RS08800	0.88	-1.6
1,990,872	-		DDA3937_RS08800	0.88	-3.2
1,990,874	+		DDA3937_RS08800	0.88	-1.2
1,990,875	-		DDA3937_RS08800	0.88	+1.4
1,990,875	-		DDA3937_RS08800	0.88	+0.9
1,990,875	-		DDA3937_RS08800	0.88	-0.7
1,990,875	-		DDA3937_RS08800	0.88	-2.2
1,990,875	-		DDA3937_RS08800	0.88	-0.4
1,990,875	-		DDA3937_RS08800	0.88	-0.4
1,990,929	+				-0.0
1,990,960	+				-0.0
1,990,961	-				-1.0
1,991,001	+				+3.5
1,991,013	+				-2.1
1,991,013	+				+2.2
1,991,014	-				-2.6
1,991,014	-				-1.6
1,991,024	+		DDA3937_RS08805	0.10	+2.3
1,991,024	+		DDA3937_RS08805	0.10	-0.4
1,991,028	+		DDA3937_RS08805	0.11	-0.0
1,991,028	+		DDA3937_RS08805	0.11	-1.0
1,991,028	+		DDA3937_RS08805	0.11	+1.2
1,991,029	-		DDA3937_RS08805	0.11	-0.0
1,991,048	-		DDA3937_RS08805	0.14	-0.2
1,991,107	+		DDA3937_RS08805	0.23	-2.8
1,991,108	-		DDA3937_RS08805	0.23	-0.8
1,991,108	-		DDA3937_RS08805	0.23	+0.9
1,991,108	-		DDA3937_RS08805	0.23	-1.6
1,991,108	-				+0.6
1,991,121	+		DDA3937_RS08805	0.25	-1.0
1,991,121	+		DDA3937_RS08805	0.25	-2.0
1,991,121	+		DDA3937_RS08805	0.25	-1.4
1,991,122	-		DDA3937_RS08805	0.25	+0.1
1,991,122	-		DDA3937_RS08805	0.25	-1.2
1,991,140	-		DDA3937_RS08805	0.28	-3.0
1,991,142	+		DDA3937_RS08805	0.28	+1.2
1,991,142	+		DDA3937_RS08805	0.28	+0.6
1,991,142	+		DDA3937_RS08805	0.28	+0.4
1,991,143	-		DDA3937_RS08805	0.28	-1.8
1,991,178	+		DDA3937_RS08805	0.33	-1.9
1,991,179	-		DDA3937_RS08805	0.34	-2.2
1,991,186	-		DDA3937_RS08805	0.35	+0.3
1,991,186	-				+0.6
1,991,199	+		DDA3937_RS08805	0.37	-2.8
1,991,199	+		DDA3937_RS08805	0.37	-2.4
1,991,200	-		DDA3937_RS08805	0.37	-3.3
1,991,265	+		DDA3937_RS08805	0.47	-1.0
1,991,265	+		DDA3937_RS08805	0.47	-3.8
1,991,293	-		DDA3937_RS08805	0.51	+4.1
1,991,306	+		DDA3937_RS08805	0.53	+1.6
1,991,306	+		DDA3937_RS08805	0.53	-3.2
1,991,306	+		DDA3937_RS08805	0.53	-1.5
1,991,306	+		DDA3937_RS08805	0.53	-1.8
1,991,307	-		DDA3937_RS08805	0.53	-0.2
1,991,320	-		DDA3937_RS08805	0.55	-2.2
1,991,356	+		DDA3937_RS08805	0.60	-0.4
1,991,357	-		DDA3937_RS08805	0.61	-0.0
1,991,393	+		DDA3937_RS08805	0.66	-1.6
1,991,393	+		DDA3937_RS08805	0.66	+0.6
1,991,393	+		DDA3937_RS08805	0.66	-2.2
1,991,394	-		DDA3937_RS08805	0.66	-0.2
1,991,394	-		DDA3937_RS08805	0.66	-0.8
1,991,394	-		DDA3937_RS08805	0.66	-0.6
1,991,394	-		DDA3937_RS08805	0.66	-2.6
1,991,394	-		DDA3937_RS08805	0.66	-1.8
1,991,394	-		DDA3937_RS08805	0.66	-1.8
1,991,394	-		DDA3937_RS08805	0.66	-0.0
1,991,399	+		DDA3937_RS08805	0.67	-0.2
1,991,399	+				+0.2
1,991,399	+		DDA3937_RS08805	0.67	+0.0
1,991,399	+		DDA3937_RS08805	0.67	-0.7
1,991,399	+		DDA3937_RS08805	0.67	+1.6
1,991,399	+		DDA3937_RS08805	0.67	-1.9
1,991,399	+		DDA3937_RS08805	0.67	+1.4
1,991,400	-		DDA3937_RS08805	0.67	-1.4
1,991,400	-		DDA3937_RS08805	0.67	+0.6
1,991,400	-		DDA3937_RS08805	0.67	+1.1
1,991,400	-		DDA3937_RS08805	0.67	-2.0
1,991,400	-		DDA3937_RS08805	0.67	+2.9
1,991,400	-		DDA3937_RS08805	0.67	-2.1
1,991,400	-		DDA3937_RS08805	0.67	-2.8
1,991,400	-		DDA3937_RS08805	0.67	-1.2
1,991,404	+		DDA3937_RS08805	0.68	-1.6
1,991,404	+		DDA3937_RS08805	0.68	-0.8
1,991,404	+		DDA3937_RS08805	0.68	-0.5
1,991,404	+		DDA3937_RS08805	0.68	+1.1
1,991,404	+		DDA3937_RS08805	0.68	-2.8
1,991,405	-		DDA3937_RS08805	0.68	-2.6
1,991,405	-		DDA3937_RS08805	0.68	-1.2
1,991,405	-		DDA3937_RS08805	0.68	-1.3
1,991,405	-		DDA3937_RS08805	0.68	-2.3
1,991,405	-		DDA3937_RS08805	0.68	-1.8
1,991,405	-		DDA3937_RS08805	0.68	+1.0
1,991,411	-		DDA3937_RS08805	0.69	-1.2
1,991,449	+		DDA3937_RS08805	0.75	+0.1
1,991,583	+				-1.0
1,991,652	-				+0.7
1,991,717	-				-0.7
1,991,717	-				-0.8
1,991,719	+				-1.2
1,991,719	+				-1.3
1,991,762	-				+2.8
1,991,807	+		DDA3937_RS08810	0.12	+1.2
1,991,861	+		DDA3937_RS08810	0.19	-1.6
1,991,862	-		DDA3937_RS08810	0.19	-1.0
1,991,862	-		DDA3937_RS08810	0.19	-1.6
1,991,911	+		DDA3937_RS08810	0.26	+0.7
1,991,912	-		DDA3937_RS08810	0.26	-0.0
1,991,912	-		DDA3937_RS08810	0.26	-3.1
1,991,912	-		DDA3937_RS08810	0.26	-2.0
1,991,912	-		DDA3937_RS08810	0.26	+1.8
1,991,958	-		DDA3937_RS08810	0.32	+2.1
1,992,123	+		DDA3937_RS08810	0.54	-2.9
1,992,142	+		DDA3937_RS08810	0.57	-0.7
1,992,143	-		DDA3937_RS08810	0.57	-1.0
1,992,143	-		DDA3937_RS08810	0.57	-3.3
1,992,143	-		DDA3937_RS08810	0.57	-2.7
1,992,145	+		DDA3937_RS08810	0.57	-1.6
1,992,271	+		DDA3937_RS08810	0.74	-1.9
1,992,272	-		DDA3937_RS08810	0.74	-1.2
1,992,272	-		DDA3937_RS08810	0.74	-0.5
1,992,328	+		DDA3937_RS08810	0.82	-1.9
1,992,328	+		DDA3937_RS08810	0.82	-0.0
1,992,328	+		DDA3937_RS08810	0.82	-1.4
1,992,328	+		DDA3937_RS08810	0.82	+4.0
1,992,328	+		DDA3937_RS08810	0.82	+0.8
1,992,329	-		DDA3937_RS08810	0.82	-1.0
1,992,454	-				-1.4
1,992,489	+				-1.0
1,992,490	-				-0.0
1,992,490	-				-1.4
1,992,491	+				-0.0
1,992,491	+				-0.8
1,992,491	+				+0.1
1,992,491	+				-1.9
1,992,491	+				+1.1
1,992,491	+				-0.6
1,992,491	+				+0.3
1,992,491	+				-2.7
1,992,492	-				-1.6
1,992,492	-				-1.7
1,992,492	-				-2.0
1,992,493	+				-2.2
1,992,494	-				+2.8
1,992,494	-				-0.2
1,992,643	+				-0.0
1,992,643	+				-0.4
1,992,644	-				+1.5
1,992,656	+				-0.8
1,992,656	+				-1.2
1,992,656	+				-0.7
1,992,656	+				-1.7
1,992,656	+				-0.7
1,992,656	+				+0.7
1,992,657	-				-1.9
1,992,657	-				+1.0
1,992,657	-				-0.7
1,992,657	-				+0.6
1,992,657	-				-2.0
1,992,657	-				-1.4
1,992,657	-				-0.0
1,992,660	-				+0.6
1,992,683	+				-1.7
1,992,698	+				-0.4
1,992,698	+				+1.3
1,992,699	-				-1.2
1,992,704	+				-1.6
1,992,704	+				-2.7
1,992,704	+				-2.4
1,992,704	+				+0.6
1,992,705	-				-1.4
1,992,737	+				+1.0
1,992,737	+				-2.8
1,992,737	+				+0.6
1,992,737	+				-0.4
1,992,737	+				-1.2
1,992,753	+				-2.6
1,992,753	+				-1.2
1,992,753	+				-1.2
1,992,753	+				+0.3
1,992,754	-				-1.4
1,992,836	+				-0.4
1,992,994	-				+1.1
1,993,027	+		DDA3937_RS08815	0.13	-0.0
1,993,281	-		DDA3937_RS08815	0.63	+1.6
1,993,345	+		DDA3937_RS08815	0.76	-3.9
1,993,391	-		DDA3937_RS08815	0.85	-2.3
1,993,423	+				+1.1
1,993,459	+				-1.7
1,993,460	-				+0.9