Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08800

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,989,250	-		DDA3937_RS08795	0.56	-1.6
1,989,326	+		DDA3937_RS08795	0.60	-1.4
1,989,327	-		DDA3937_RS08795	0.60	-0.9
1,989,374	+		DDA3937_RS08795	0.63	-0.4
1,989,519	+		DDA3937_RS08795	0.72	-0.7
1,989,520	-		DDA3937_RS08795	0.72	+0.4
1,989,561	+		DDA3937_RS08795	0.74	-0.0
1,989,626	+		DDA3937_RS08795	0.78	-2.0
1,989,627	-		DDA3937_RS08795	0.78	-0.5
1,989,627	-		DDA3937_RS08795	0.78	+0.1
1,989,654	-		DDA3937_RS08795	0.80	-2.7
1,989,702	-		DDA3937_RS08795	0.82	-3.1
1,989,702	-		DDA3937_RS08795	0.82	-1.9
1,989,702	-		DDA3937_RS08795	0.82	+3.9
1,989,742	-		DDA3937_RS08795	0.85	-1.9
1,989,742	-		DDA3937_RS08795	0.85	-0.2
1,989,742	-		DDA3937_RS08795	0.85	+0.6
1,989,821	+		DDA3937_RS08795	0.89	+0.8
1,990,078	+				+0.6
1,990,078	+				+4.3
1,990,079	-				+0.4
1,990,079	-				-0.6
1,990,080	+				+0.0
1,990,080	+				+1.4
1,990,081	-				+0.4
1,990,115	+				-3.1
1,990,115	+				+1.6
1,990,116	-				-1.9
1,990,116	-				-4.0
1,990,116	-				-0.4
1,990,495	+		DDA3937_RS08800	0.36	-0.7
1,990,495	+		DDA3937_RS08800	0.36	-0.7
1,990,496	-				-0.4
1,990,496	-		DDA3937_RS08800	0.36	+0.1
1,990,646	+		DDA3937_RS08800	0.56	-2.8
1,990,701	+		DDA3937_RS08800	0.64	-3.1
1,990,702	-		DDA3937_RS08800	0.64	-0.4
1,990,871	+		DDA3937_RS08800	0.88	+0.1
1,990,871	+		DDA3937_RS08800	0.88	-1.9
1,990,872	-		DDA3937_RS08800	0.88	-1.6
1,990,872	-		DDA3937_RS08800	0.88	-3.2
1,990,874	+		DDA3937_RS08800	0.88	-1.2
1,990,875	-		DDA3937_RS08800	0.88	+1.4
1,990,875	-		DDA3937_RS08800	0.88	+0.9
1,990,875	-		DDA3937_RS08800	0.88	-0.7
1,990,875	-		DDA3937_RS08800	0.88	-2.2
1,990,875	-		DDA3937_RS08800	0.88	-0.4
1,990,875	-		DDA3937_RS08800	0.88	-0.4
1,990,929	+				-0.0
1,990,960	+				-0.0
1,990,961	-				-1.0
1,991,001	+				+3.5
1,991,013	+				-2.1
1,991,013	+				+2.2
1,991,014	-				-2.6
1,991,014	-				-1.6
1,991,024	+		DDA3937_RS08805	0.10	+2.3
1,991,024	+		DDA3937_RS08805	0.10	-0.4
1,991,028	+		DDA3937_RS08805	0.11	-0.0
1,991,028	+		DDA3937_RS08805	0.11	-1.0
1,991,028	+		DDA3937_RS08805	0.11	+1.2
1,991,029	-		DDA3937_RS08805	0.11	-0.0
1,991,048	-		DDA3937_RS08805	0.14	-0.2
1,991,107	+		DDA3937_RS08805	0.23	-2.8
1,991,108	-		DDA3937_RS08805	0.23	-0.8
1,991,108	-		DDA3937_RS08805	0.23	+0.9
1,991,108	-		DDA3937_RS08805	0.23	-1.6
1,991,108	-				+0.6
1,991,121	+		DDA3937_RS08805	0.25	-1.0
1,991,121	+		DDA3937_RS08805	0.25	-2.0
1,991,121	+		DDA3937_RS08805	0.25	-1.4
1,991,122	-		DDA3937_RS08805	0.25	+0.1
1,991,122	-		DDA3937_RS08805	0.25	-1.2
1,991,140	-		DDA3937_RS08805	0.28	-3.0
1,991,142	+		DDA3937_RS08805	0.28	+1.2
1,991,142	+		DDA3937_RS08805	0.28	+0.6
1,991,142	+		DDA3937_RS08805	0.28	+0.4
1,991,143	-		DDA3937_RS08805	0.28	-1.8
1,991,178	+		DDA3937_RS08805	0.33	-1.9
1,991,179	-		DDA3937_RS08805	0.34	-2.2
1,991,186	-		DDA3937_RS08805	0.35	+0.3
1,991,186	-				+0.6
1,991,199	+		DDA3937_RS08805	0.37	-2.8
1,991,199	+		DDA3937_RS08805	0.37	-2.4
1,991,200	-		DDA3937_RS08805	0.37	-3.3
1,991,265	+		DDA3937_RS08805	0.47	-1.0
1,991,265	+		DDA3937_RS08805	0.47	-3.8
1,991,293	-		DDA3937_RS08805	0.51	+4.1
1,991,306	+		DDA3937_RS08805	0.53	+1.6
1,991,306	+		DDA3937_RS08805	0.53	-3.2
1,991,306	+		DDA3937_RS08805	0.53	-1.5
1,991,306	+		DDA3937_RS08805	0.53	-1.8
1,991,307	-		DDA3937_RS08805	0.53	-0.2
1,991,320	-		DDA3937_RS08805	0.55	-2.2
1,991,356	+		DDA3937_RS08805	0.60	-0.4
1,991,357	-		DDA3937_RS08805	0.61	-0.0
1,991,393	+		DDA3937_RS08805	0.66	-1.6
1,991,393	+		DDA3937_RS08805	0.66	+0.6
1,991,393	+		DDA3937_RS08805	0.66	-2.2
1,991,394	-		DDA3937_RS08805	0.66	-0.2
1,991,394	-		DDA3937_RS08805	0.66	-0.8
1,991,394	-		DDA3937_RS08805	0.66	-0.6
1,991,394	-		DDA3937_RS08805	0.66	-2.6
1,991,394	-		DDA3937_RS08805	0.66	-1.8
1,991,394	-		DDA3937_RS08805	0.66	-1.8
1,991,394	-		DDA3937_RS08805	0.66	-0.0
1,991,399	+		DDA3937_RS08805	0.67	-0.2
1,991,399	+				+0.2
1,991,399	+		DDA3937_RS08805	0.67	+0.0
1,991,399	+		DDA3937_RS08805	0.67	-0.7
1,991,399	+		DDA3937_RS08805	0.67	+1.6
1,991,399	+		DDA3937_RS08805	0.67	-1.9
1,991,399	+		DDA3937_RS08805	0.67	+1.4
1,991,400	-		DDA3937_RS08805	0.67	-1.4
1,991,400	-		DDA3937_RS08805	0.67	+0.6
1,991,400	-		DDA3937_RS08805	0.67	+1.1
1,991,400	-		DDA3937_RS08805	0.67	-2.0
1,991,400	-		DDA3937_RS08805	0.67	+2.9
1,991,400	-		DDA3937_RS08805	0.67	-2.1
1,991,400	-		DDA3937_RS08805	0.67	-2.8
1,991,400	-		DDA3937_RS08805	0.67	-1.2
1,991,404	+		DDA3937_RS08805	0.68	-1.6
1,991,404	+		DDA3937_RS08805	0.68	-0.8
1,991,404	+		DDA3937_RS08805	0.68	-0.5
1,991,404	+		DDA3937_RS08805	0.68	+1.1
1,991,404	+		DDA3937_RS08805	0.68	-2.8
1,991,405	-		DDA3937_RS08805	0.68	-2.6
1,991,405	-		DDA3937_RS08805	0.68	-1.2
1,991,405	-		DDA3937_RS08805	0.68	-1.3
1,991,405	-		DDA3937_RS08805	0.68	-2.3
1,991,405	-		DDA3937_RS08805	0.68	-1.8
1,991,405	-		DDA3937_RS08805	0.68	+1.0
1,991,411	-		DDA3937_RS08805	0.69	-1.2
1,991,449	+		DDA3937_RS08805	0.75	+0.1
1,991,583	+				-1.0
1,991,652	-				+0.7
1,991,717	-				-0.7
1,991,717	-				-0.8
1,991,719	+				-1.2
1,991,719	+				-1.3
1,991,762	-				+2.8
1,991,807	+		DDA3937_RS08810	0.12	+1.2
1,991,861	+		DDA3937_RS08810	0.19	-1.6
1,991,862	-		DDA3937_RS08810	0.19	-1.0
1,991,862	-		DDA3937_RS08810	0.19	-1.6
1,991,911	+		DDA3937_RS08810	0.26	+0.7
1,991,912	-		DDA3937_RS08810	0.26	-0.0
1,991,912	-		DDA3937_RS08810	0.26	-3.1
1,991,912	-		DDA3937_RS08810	0.26	-2.0
1,991,912	-		DDA3937_RS08810	0.26	+1.8
1,991,958	-		DDA3937_RS08810	0.32	+2.1