Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08775

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,981,260	+		DDA3937_RS08770	0.32	+1.6
1,981,274	+				-0.8
1,981,274	+		DDA3937_RS08770	0.34	-3.5
1,981,274	+		DDA3937_RS08770	0.34	+2.0
1,981,274	+		DDA3937_RS08770	0.34	-1.2
1,981,274	+		DDA3937_RS08770	0.34	-0.6
1,981,275	-		DDA3937_RS08770	0.34	-2.3
1,981,275	-		DDA3937_RS08770	0.34	+2.4
1,981,278	+		DDA3937_RS08770	0.34	-1.4
1,981,278	+		DDA3937_RS08770	0.34	-0.7
1,981,278	+		DDA3937_RS08770	0.34	+1.3
1,981,278	+				+3.2
1,981,279	-		DDA3937_RS08770	0.34	+1.6
1,981,336	-		DDA3937_RS08770	0.39	-2.1
1,981,336	-		DDA3937_RS08770	0.39	-0.8
1,981,383	+		DDA3937_RS08770	0.43	-0.0
1,981,383	+		DDA3937_RS08770	0.43	-1.9
1,981,383	+		DDA3937_RS08770	0.43	+3.0
1,981,389	+		DDA3937_RS08770	0.43	-0.4
1,981,397	-		DDA3937_RS08770	0.44	-0.4
1,981,412	+		DDA3937_RS08770	0.45	-1.2
1,981,412	+		DDA3937_RS08770	0.45	-2.1
1,981,459	+		DDA3937_RS08770	0.49	+0.7
1,981,459	+		DDA3937_RS08770	0.49	+1.2
1,981,459	+		DDA3937_RS08770	0.49	+0.9
1,981,460	-		DDA3937_RS08770	0.50	-1.6
1,981,460	-		DDA3937_RS08770	0.50	-0.2
1,981,460	-		DDA3937_RS08770	0.50	-1.7
1,981,467	+		DDA3937_RS08770	0.50	-1.0
1,981,467	+		DDA3937_RS08770	0.50	+0.7
1,981,494	+		DDA3937_RS08770	0.52	-2.4
1,981,494	+		DDA3937_RS08770	0.52	-1.8
1,981,494	+		DDA3937_RS08770	0.52	-1.3
1,981,494	+				-0.8
1,981,494	+		DDA3937_RS08770	0.52	+0.7
1,981,494	+		DDA3937_RS08770	0.52	+0.6
1,981,495	-		DDA3937_RS08770	0.53	-1.4
1,981,495	-		DDA3937_RS08770	0.53	-2.4
1,981,495	-		DDA3937_RS08770	0.53	+1.3
1,981,495	-		DDA3937_RS08770	0.53	+1.1
1,981,495	-		DDA3937_RS08770	0.53	-1.0
1,981,496	+		DDA3937_RS08770	0.53	-2.0
1,981,497	-		DDA3937_RS08770	0.53	-2.2
1,981,568	+		DDA3937_RS08770	0.59	-0.3
1,981,569	-		DDA3937_RS08770	0.59	+1.2
1,981,569	-		DDA3937_RS08770	0.59	-1.6
1,981,569	-		DDA3937_RS08770	0.59	+2.2
1,981,794	+		DDA3937_RS08770	0.78	+0.6
1,981,794	+		DDA3937_RS08770	0.78	-2.8
1,981,795	-		DDA3937_RS08770	0.78	-4.0
1,981,795	-		DDA3937_RS08770	0.78	+0.2
1,981,795	-		DDA3937_RS08770	0.78	-2.2
1,981,799	+		DDA3937_RS08770	0.79	+1.5
1,981,799	+		DDA3937_RS08770	0.79	-0.0
1,981,799	+		DDA3937_RS08770	0.79	+2.4
1,981,816	-		DDA3937_RS08770	0.80	+1.6
1,981,859	+		DDA3937_RS08770	0.84	+0.1
1,981,914	+		DDA3937_RS08770	0.88	-2.0
1,981,915	-		DDA3937_RS08770	0.89	+3.6
1,981,915	-		DDA3937_RS08770	0.89	-2.1
1,981,915	-		DDA3937_RS08770	0.89	-0.8
1,981,917	+		DDA3937_RS08770	0.89	+1.3
1,981,917	+		DDA3937_RS08770	0.89	-1.0
1,981,917	+		DDA3937_RS08770	0.89	-0.4
1,981,917	+		DDA3937_RS08770	0.89	-0.8
1,981,917	+		DDA3937_RS08770	0.89	-2.2
1,981,917	+		DDA3937_RS08770	0.89	+3.6
1,981,918	-		DDA3937_RS08770	0.89	+1.9
1,981,918	-		DDA3937_RS08770	0.89	+0.6
1,981,918	-		DDA3937_RS08770	0.89	-1.2
1,981,918	-		DDA3937_RS08770	0.89	-1.6
1,981,918	-		DDA3937_RS08770	0.89	+0.5
1,981,918	-		DDA3937_RS08770	0.89	-0.8
1,981,919	+		DDA3937_RS08770	0.89	-1.4
1,981,919	+		DDA3937_RS08770	0.89	-0.2
1,981,919	+		DDA3937_RS08770	0.89	-2.1
1,981,919	+		DDA3937_RS08770	0.89	-1.9
1,981,919	+		DDA3937_RS08770	0.89	-0.0
1,981,920	-		DDA3937_RS08770	0.89	-1.3
1,981,920	-		DDA3937_RS08770	0.89	-0.8
1,981,935	+				+1.5
1,982,010	+				-2.3
1,982,010	+				-1.5
1,982,010	+				-3.3
1,982,010	+				+0.2
1,982,020	+				+0.5
1,982,040	-				+1.4
1,982,129	-				-2.2
1,982,129	-				-1.6
1,982,153	-				-2.4
1,982,153	-				-1.9
1,982,241	+				+1.5
1,982,241	+				+0.5
1,982,241	+				-0.0
1,982,241	+				+1.8
1,982,242	-				-1.5
1,982,242	-				-2.1
1,982,248	+				+0.1
1,982,248	+				+1.7
1,982,249	-				-1.6
1,982,249	-				+1.3
1,982,249	-				-1.9
1,982,249	-				-1.7
1,982,318	-				-2.3
1,982,326	+				-1.4
1,982,326	+				+1.4
1,982,326	+				+3.3
1,982,326	+				-1.2
1,982,326	+				+1.7
1,982,326	+				+2.6
1,982,326	+				+1.2
1,982,327	-				+1.8
1,982,327	-				-1.3
1,982,327	-				-0.6
1,982,327	-				-1.2
1,982,327	-				-2.3
1,982,327	-				-2.2
1,982,327	-				+1.1
1,982,327	-				+0.7
1,982,327	-				-0.0
1,982,327	-				-2.2
1,982,327	-				+0.6
1,982,336	+				+0.6
1,982,337	-				-2.2
1,982,503	+		DDA3937_RS08775	0.27	+1.7
1,982,503	+		DDA3937_RS08775	0.27	-2.1
1,982,504	-		DDA3937_RS08775	0.27	-2.0
1,982,504	-		DDA3937_RS08775	0.27	-0.9
1,982,504	-		DDA3937_RS08775	0.27	-2.7
1,982,504	-		DDA3937_RS08775	0.27	-1.1
1,982,504	-		DDA3937_RS08775	0.27	-2.3
1,982,504	-		DDA3937_RS08775	0.27	+1.6
1,982,706	+		DDA3937_RS08775	0.48	+1.4
1,982,706	+		DDA3937_RS08775	0.48	-0.1
1,982,706	+		DDA3937_RS08775	0.48	-1.9
1,982,706	+		DDA3937_RS08775	0.48	+2.8
1,982,706	+		DDA3937_RS08775	0.48	+2.6
1,982,707	-		DDA3937_RS08775	0.48	-1.2
1,982,707	-		DDA3937_RS08775	0.48	-2.1
1,982,787	+		DDA3937_RS08775	0.56	+1.4
1,982,787	+		DDA3937_RS08775	0.56	+3.4
1,982,860	+		DDA3937_RS08775	0.64	-3.9
1,982,861	-		DDA3937_RS08775	0.64	+0.8
1,982,895	+		DDA3937_RS08775	0.67	-0.1
1,982,938	+		DDA3937_RS08775	0.72	+1.1
1,983,023	+		DDA3937_RS08775	0.81	+3.2
1,983,023	+		DDA3937_RS08775	0.81	+2.0
1,983,215	-				-1.6
1,983,215	-				+0.8
1,983,227	+				+2.3
1,983,228	-				-0.4
1,983,231	+				-2.1
1,983,231	+				-1.6
1,983,231	+				-0.7
1,983,231	+				+1.7
1,983,231	+				-1.4
1,983,231	+				-0.4
1,983,232	-				-1.7
1,983,232	-				-0.0
1,983,232	-				-1.6
1,983,232	-				-1.7
1,983,232	-				+1.3
1,983,232	-				-0.3
1,983,232	-				-0.9
1,983,232	-				+0.6
1,983,232	-				-1.6
1,983,232	-				-1.2
1,983,232	-				-0.0
1,983,232	-				-0.7
1,983,256	+				-1.9
1,983,256	+				-0.3
1,983,256	+				-1.9
1,983,263	+				+2.6
1,983,264	-				-0.0
1,983,287	+				-1.0
1,983,332	+				-1.1
1,983,332	+				-1.4
1,983,332	+				-1.2
1,983,332	+				-0.4
1,983,332	+				+0.8
1,983,333	-				-1.9
1,983,333	-				-1.2
1,983,333	-				-1.4
1,983,333	-				-0.8
1,983,333	-				-1.7
1,983,334	+				+3.2
1,983,334	+				-2.7
1,983,335	-				-2.8
1,983,335	-				-1.7
1,983,335	-				+1.1
1,983,335	-				-2.3
1,983,400	+				-0.0
1,983,401	-				-1.2
1,983,439	+		DDA3937_RS08780	0.10	-0.6
1,983,439	+		DDA3937_RS08780	0.10	+0.7
1,983,439	+		DDA3937_RS08780	0.10	-0.2
1,983,439	+				+1.6
1,983,694	+		DDA3937_RS08780	0.24	-1.4
1,983,695	-		DDA3937_RS08780	0.24	-2.3
1,983,705	-		DDA3937_RS08780	0.25	-0.0
1,983,821	+		DDA3937_RS08780	0.31	-2.4
1,983,822	-		DDA3937_RS08780	0.31	-1.7
1,983,822	-		DDA3937_RS08780	0.31	-0.7
1,983,830	+		DDA3937_RS08780	0.31	-2.8
1,983,831	-		DDA3937_RS08780	0.31	-0.6
1,984,022	+		DDA3937_RS08780	0.42	+3.2
1,984,023	-		DDA3937_RS08780	0.42	+0.6
1,984,023	-		DDA3937_RS08780	0.42	+1.6
1,984,079	-		DDA3937_RS08780	0.45	+0.1
1,984,087	+		DDA3937_RS08780	0.45	-1.9
1,984,148	-		DDA3937_RS08780	0.48	-0.4
1,984,201	+		DDA3937_RS08780	0.51	-2.7