Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07850 and DDA3937_RS07855 are separated by 12 nucleotides DDA3937_RS07855 and DDA3937_RS07860 overlap by 8 nucleotides DDA3937_RS07860 and DDA3937_RS07865 are separated by 253 nucleotides
DDA3937_RS07850: DDA3937_RS07850 - formate dehydrogenase-N subunit alpha, at 1,774,744 to 1,777,791
_RS07850
DDA3937_RS07855: DDA3937_RS07855 - formate dehydrogenase subunit beta, at 1,777,804 to 1,778,712
_RS07855
DDA3937_RS07860: DDA3937_RS07860 - formate dehydrogenase-N subunit gamma, at 1,778,705 to 1,779,346
_RS07860
DDA3937_RS07865: DDA3937_RS07865 - IS110 family transposase, at 1,779,600 to 1,780,589
_RS07865
Position (kb) 1778
1779
1780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1777.757 kb on - strand at 1777.789 kb on + strand at 1777.790 kb on - strand at 1777.803 kb on + strand at 1777.803 kb on + strand at 1777.824 kb on + strand at 1777.824 kb on + strand at 1777.824 kb on + strand at 1777.825 kb on - strand at 1777.825 kb on - strand at 1777.828 kb on - strand at 1777.881 kb on + strand at 1777.882 kb on - strand at 1777.929 kb on + strand, within DDA3937_RS07855 at 1777.999 kb on + strand, within DDA3937_RS07855 at 1778.104 kb on - strand, within DDA3937_RS07855 at 1778.104 kb on - strand, within DDA3937_RS07855 at 1778.165 kb on - strand, within DDA3937_RS07855 at 1778.203 kb on - strand, within DDA3937_RS07855 at 1778.252 kb on + strand, within DDA3937_RS07855 at 1778.253 kb on - strand, within DDA3937_RS07855 at 1778.256 kb on + strand, within DDA3937_RS07855 at 1778.256 kb on + strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.257 kb on - strand, within DDA3937_RS07855 at 1778.275 kb on + strand, within DDA3937_RS07855 at 1778.276 kb on - strand, within DDA3937_RS07855 at 1778.444 kb on - strand, within DDA3937_RS07855 at 1778.479 kb on + strand, within DDA3937_RS07855 at 1778.479 kb on + strand, within DDA3937_RS07855 at 1778.479 kb on + strand at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.480 kb on - strand, within DDA3937_RS07855 at 1778.512 kb on + strand, within DDA3937_RS07855 at 1778.629 kb on + strand at 1778.629 kb on + strand at 1778.629 kb on + strand at 1778.630 kb on - strand at 1778.630 kb on - strand at 1778.700 kb on + strand at 1778.700 kb on + strand at 1778.701 kb on - strand at 1778.701 kb on - strand at 1778.701 kb on - strand at 1778.701 kb on - strand at 1778.701 kb on - strand at 1778.711 kb on - strand at 1778.741 kb on - strand at 1778.848 kb on + strand, within DDA3937_RS07860 at 1779.025 kb on + strand, within DDA3937_RS07860 at 1779.025 kb on + strand, within DDA3937_RS07860 at 1779.026 kb on - strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.029 kb on + strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.030 kb on - strand, within DDA3937_RS07860 at 1779.031 kb on + strand, within DDA3937_RS07860 at 1779.032 kb on - strand, within DDA3937_RS07860 at 1779.172 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.215 kb on + strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.216 kb on - strand, within DDA3937_RS07860 at 1779.337 kb on + strand at 1779.337 kb on + strand at 1779.338 kb on - strand at 1779.344 kb on + strand at 1779.344 kb on + strand at 1779.344 kb on + strand at 1779.344 kb on + strand at 1779.370 kb on + strand at 1779.375 kb on - strand at 1779.375 kb on - strand at 1779.577 kb on - strand at 1779.787 kb on + strand, within DDA3937_RS07865 at 1780.207 kb on - strand, within DDA3937_RS07865
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,777,757 - -2.9 1,777,789 + +1.0 1,777,790 - -2.1 1,777,803 + +1.7 1,777,803 + +0.7 1,777,824 + +0.9 1,777,824 + -0.2 1,777,824 + -0.5 1,777,825 - -3.1 1,777,825 - -3.3 1,777,828 - +2.3 1,777,881 + -0.6 1,777,882 - -2.9 1,777,929 + DDA3937_RS07855 0.14 -0.8 1,777,999 + DDA3937_RS07855 0.21 -1.9 1,778,104 - DDA3937_RS07855 0.33 +1.0 1,778,104 - DDA3937_RS07855 0.33 +1.2 1,778,165 - DDA3937_RS07855 0.40 +3.2 1,778,203 - DDA3937_RS07855 0.44 +0.2 1,778,252 + DDA3937_RS07855 0.49 -0.1 1,778,253 - DDA3937_RS07855 0.49 -2.3 1,778,256 + DDA3937_RS07855 0.50 +2.5 1,778,256 + DDA3937_RS07855 0.50 +3.6 1,778,257 - DDA3937_RS07855 0.50 -2.1 1,778,257 - DDA3937_RS07855 0.50 -1.1 1,778,257 - DDA3937_RS07855 0.50 +1.3 1,778,257 - DDA3937_RS07855 0.50 -3.3 1,778,257 - DDA3937_RS07855 0.50 +2.5 1,778,257 - DDA3937_RS07855 0.50 +0.8 1,778,275 + DDA3937_RS07855 0.52 -0.0 1,778,276 - DDA3937_RS07855 0.52 +0.2 1,778,444 - DDA3937_RS07855 0.70 -1.5 1,778,479 + DDA3937_RS07855 0.74 -2.9 1,778,479 + DDA3937_RS07855 0.74 -2.4 1,778,479 + +0.9 1,778,480 - DDA3937_RS07855 0.74 -0.1 1,778,480 - DDA3937_RS07855 0.74 +1.0 1,778,480 - DDA3937_RS07855 0.74 -1.9 1,778,480 - DDA3937_RS07855 0.74 +0.0 1,778,480 - DDA3937_RS07855 0.74 -2.2 1,778,480 - DDA3937_RS07855 0.74 +1.9 1,778,480 - DDA3937_RS07855 0.74 -1.9 1,778,480 - DDA3937_RS07855 0.74 -2.9 1,778,480 - DDA3937_RS07855 0.74 -0.8 1,778,480 - DDA3937_RS07855 0.74 -1.6 1,778,512 + DDA3937_RS07855 0.78 -2.7 1,778,629 + -0.5 1,778,629 + -3.4 1,778,629 + -1.8 1,778,630 - +1.0 1,778,630 - +1.3 1,778,700 + -0.4 1,778,700 + -2.8 1,778,701 - -1.6 1,778,701 - -3.1 1,778,701 - -2.1 1,778,701 - -1.8 1,778,701 - -1.5 1,778,711 - -1.2 1,778,741 - -0.9 1,778,848 + DDA3937_RS07860 0.22 +2.1 1,779,025 + DDA3937_RS07860 0.50 -0.4 1,779,025 + DDA3937_RS07860 0.50 -0.3 1,779,026 - DDA3937_RS07860 0.50 -1.1 1,779,029 + DDA3937_RS07860 0.50 -0.3 1,779,029 + DDA3937_RS07860 0.50 -1.2 1,779,029 + DDA3937_RS07860 0.50 +3.7 1,779,029 + DDA3937_RS07860 0.50 +0.6 1,779,029 + DDA3937_RS07860 0.50 +0.6 1,779,029 + DDA3937_RS07860 0.50 +0.2 1,779,029 + DDA3937_RS07860 0.50 +1.3 1,779,030 - DDA3937_RS07860 0.51 -1.1 1,779,030 - DDA3937_RS07860 0.51 -3.1 1,779,030 - DDA3937_RS07860 0.51 -3.6 1,779,030 - DDA3937_RS07860 0.51 -0.3 1,779,030 - DDA3937_RS07860 0.51 -1.1 1,779,030 - DDA3937_RS07860 0.51 +1.8 1,779,030 - DDA3937_RS07860 0.51 -2.2 1,779,031 + DDA3937_RS07860 0.51 -0.5 1,779,032 - DDA3937_RS07860 0.51 -3.1 1,779,172 + DDA3937_RS07860 0.73 +0.5 1,779,215 + DDA3937_RS07860 0.79 -2.2 1,779,215 + DDA3937_RS07860 0.79 +3.1 1,779,215 + DDA3937_RS07860 0.79 +0.2 1,779,215 + DDA3937_RS07860 0.79 +0.2 1,779,215 + DDA3937_RS07860 0.79 -0.5 1,779,215 + DDA3937_RS07860 0.79 +1.1 1,779,215 + DDA3937_RS07860 0.79 -2.1 1,779,215 + DDA3937_RS07860 0.79 -0.1 1,779,215 + DDA3937_RS07860 0.79 -2.4 1,779,215 + DDA3937_RS07860 0.79 +0.2 1,779,215 + DDA3937_RS07860 0.79 -1.5 1,779,216 - DDA3937_RS07860 0.80 +2.8 1,779,216 - DDA3937_RS07860 0.80 -0.6 1,779,216 - DDA3937_RS07860 0.80 +1.8 1,779,216 - DDA3937_RS07860 0.80 +0.7 1,779,216 - DDA3937_RS07860 0.80 -3.1 1,779,216 - DDA3937_RS07860 0.80 -1.5 1,779,216 - DDA3937_RS07860 0.80 -1.8 1,779,216 - DDA3937_RS07860 0.80 +0.3 1,779,216 - DDA3937_RS07860 0.80 +0.9 1,779,216 - DDA3937_RS07860 0.80 -1.5 1,779,216 - DDA3937_RS07860 0.80 +0.4 1,779,216 - DDA3937_RS07860 0.80 +2.4 1,779,337 + -0.8 1,779,337 + -1.1 1,779,338 - -2.3 1,779,344 + +0.9 1,779,344 + -2.6 1,779,344 + -2.4 1,779,344 + -0.2 1,779,370 + -2.7 1,779,375 - -0.6 1,779,375 - +0.3 1,779,577 - -2.7 1,779,787 + DDA3937_RS07865 0.19 -1.9 1,780,207 - DDA3937_RS07865 0.61 +1.8
Or see this region's nucleotide sequence