Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07850

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,773,782	-		DDA3937_RS07845	0.82	-1.3
1,773,793	+		DDA3937_RS07845	0.82	-1.9
1,773,793	+		DDA3937_RS07845	0.82	-0.1
1,773,793	+		DDA3937_RS07845	0.82	+0.4
1,773,793	+		DDA3937_RS07845	0.82	+0.1
1,773,793	+		DDA3937_RS07845	0.82	-0.4
1,773,793	+		DDA3937_RS07845	0.82	+3.4
1,773,793	+		DDA3937_RS07845	0.82	-1.2
1,773,793	+		DDA3937_RS07845	0.82	+0.7
1,773,793	+		DDA3937_RS07845	0.82	-1.5
1,773,794	-		DDA3937_RS07845	0.82	-0.7
1,773,794	-		DDA3937_RS07845	0.82	+2.7
1,773,794	-		DDA3937_RS07845	0.82	-0.6
1,773,794	-		DDA3937_RS07845	0.82	-0.2
1,773,794	-		DDA3937_RS07845	0.82	-1.8
1,773,794	-		DDA3937_RS07845	0.82	-3.0
1,773,794	-		DDA3937_RS07845	0.82	-1.8
1,773,794	-		DDA3937_RS07845	0.82	-0.8
1,773,794	-		DDA3937_RS07845	0.82	-0.3
1,773,794	-		DDA3937_RS07845	0.82	-1.3
1,773,794	-		DDA3937_RS07845	0.82	+1.4
1,773,888	+		DDA3937_RS07845	0.86	+0.3
1,773,888	+		DDA3937_RS07845	0.86	-1.5
1,773,888	+		DDA3937_RS07845	0.86	-1.3
1,773,888	+		DDA3937_RS07845	0.86	-0.8
1,773,888	+		DDA3937_RS07845	0.86	-0.5
1,773,888	+		DDA3937_RS07845	0.86	-1.5
1,773,889	-		DDA3937_RS07845	0.86	+0.9
1,773,889	-		DDA3937_RS07845	0.86	+1.5
1,773,889	-		DDA3937_RS07845	0.86	+0.3
1,773,889	-		DDA3937_RS07845	0.86	+1.1
1,773,906	+		DDA3937_RS07845	0.87	-1.1
1,773,919	+		DDA3937_RS07845	0.87	-1.1
1,773,920	-		DDA3937_RS07845	0.87	-1.3
1,773,920	-				+0.5
1,773,951	+		DDA3937_RS07845	0.88	-1.9
1,773,952	-		DDA3937_RS07845	0.88	+0.5
1,773,974	+		DDA3937_RS07845	0.89	-0.8
1,773,974	+		DDA3937_RS07845	0.89	+0.8
1,773,974	+		DDA3937_RS07845	0.89	+2.4
1,773,975	-		DDA3937_RS07845	0.89	-2.6
1,773,978	+		DDA3937_RS07845	0.89	+0.3
1,773,979	-		DDA3937_RS07845	0.89	+1.2
1,774,095	+				-0.7
1,774,095	+				+4.4
1,774,096	-				-1.8
1,774,158	-				+0.4
1,774,183	+				+0.9
1,774,184	-				+1.2
1,774,184	-				+1.5
1,774,189	+				+1.0
1,774,189	+				+3.4
1,774,190	-				-1.5
1,774,190	-				+0.8
1,774,190	-				-0.5
1,774,252	+				-0.4
1,774,253	-				+1.5
1,774,253	-				+0.4
1,774,351	-				+0.6
1,774,351	-				-1.8
1,774,363	+				-2.6
1,774,363	+				-2.9
1,774,364	-				-2.0
1,774,364	-				-1.9
1,774,368	-				+3.3
1,774,368	-				-1.3
1,774,394	+				-0.2
1,774,395	-				-0.7
1,774,395	-				-2.4
1,774,395	-				-0.7
1,774,395	-				+0.8
1,774,395	-				+1.5
1,774,422	+				-0.8
1,774,422	+				+1.0
1,774,423	-				-0.5
1,774,423	-				+0.8
1,774,423	-				-0.3
1,774,423	-				+0.4
1,774,469	+				+1.3
1,774,486	+				-2.4
1,774,486	+				-3.3
1,774,487	-				-1.1
1,774,487	-				+2.4
1,774,487	-				-0.4
1,774,487	-				+1.5
1,774,487	-				+0.3
1,774,487	-				-1.3
1,774,556	-				+0.7
1,774,564	+				-0.1
1,774,564	+				-1.9
1,774,568	+				-1.1
1,774,569	-				-0.7
1,774,569	-				-1.9
1,774,574	+				+1.2
1,774,574	+				+3.1
1,774,574	+				-1.6
1,774,574	+				+0.1
1,774,574	+				+1.2
1,774,575	-				-1.1
1,774,575	-				+2.1
1,774,575	-				+1.0
1,774,575	-				-2.3
1,774,575	-				-2.4
1,774,575	-				-2.5
1,774,622	-				-2.3
1,774,642	+				-3.1
1,774,642	+				-0.8
1,774,642	+				+1.3
1,774,642	+				-1.6
1,774,642	+				+0.8
1,774,642	+				-0.8
1,774,642	+				-2.5
1,774,642	+				-1.3
1,774,642	+				+1.1
1,774,643	-				-1.4
1,774,643	-				-0.6
1,774,643	-				+1.7
1,774,644	-				-1.4
1,774,646	-				-0.3
1,774,648	+				+0.3
1,774,648	+				-1.6
1,774,649	-				-3.7
1,774,657	-				-0.9
1,774,657	-				-0.8
1,774,698	-				-0.5
1,774,724	+				-2.2
1,774,724	+				+1.9
1,774,725	-				+0.8
1,774,725	-				-2.7
1,774,731	+				+3.9
1,774,731	+				+0.5
1,774,731	+				-1.5
1,774,731	+				-0.8
1,774,732	-				-1.7
1,774,753	-				-0.8
1,774,753	-				-0.1
1,774,771	-				-1.7
1,774,771	-				-0.5
1,774,800	+				+0.0
1,774,800	+				-2.4
1,774,801	-				-1.3
1,774,801	-				-2.7
1,774,855	+				+0.2
1,774,855	+				-1.1
1,774,856	-				-1.1
1,774,856	-				+0.1
1,774,856	-				-1.4
1,774,888	-				+2.5
1,774,897	+				+0.1
1,774,897	+				-1.5
1,774,898	-				-0.9
1,774,898	-				-2.9
1,774,898	-				+0.2
1,774,927	+				-2.9
1,774,927	+				+2.6
1,774,927	+				-1.5
1,775,015	+				+0.9
1,775,015	+				-2.6
1,775,015	+				-3.4
1,775,044	+				+0.4
1,775,045	-				-0.3
1,775,045	-				-1.8
1,775,045	-				+1.1
1,775,045	-				-2.9
1,775,045	-				-2.1
1,775,045	-				-1.8
1,775,072	-		DDA3937_RS07850	0.11	-1.0
1,775,100	+		DDA3937_RS07850	0.12	+2.0
1,775,612	-		DDA3937_RS07850	0.28	+1.2
1,775,644	+		DDA3937_RS07850	0.30	-1.6
1,775,656	+		DDA3937_RS07850	0.30	-0.5
1,775,657	-		DDA3937_RS07850	0.30	-2.9
1,775,657	-		DDA3937_RS07850	0.30	-1.8
1,775,657	-				-0.1
1,775,719	+		DDA3937_RS07850	0.32	-0.5
1,775,719	+		DDA3937_RS07850	0.32	-1.1
1,775,740	+		DDA3937_RS07850	0.33	-0.4
1,775,740	+		DDA3937_RS07850	0.33	-2.2
1,775,740	+		DDA3937_RS07850	0.33	+1.9
1,775,741	-		DDA3937_RS07850	0.33	-2.4
1,775,741	-		DDA3937_RS07850	0.33	-2.3
1,775,902	+		DDA3937_RS07850	0.38	-3.3
1,775,903	-		DDA3937_RS07850	0.38	+2.0
1,775,965	+		DDA3937_RS07850	0.40	-1.3
1,775,965	+		DDA3937_RS07850	0.40	-1.6
1,775,966	-		DDA3937_RS07850	0.40	-2.3
1,776,103	+		DDA3937_RS07850	0.45	-1.9
1,776,104	-		DDA3937_RS07850	0.45	-2.6
1,776,142	+		DDA3937_RS07850	0.46	-1.8
1,776,142	+		DDA3937_RS07850	0.46	+0.5
1,776,142	+		DDA3937_RS07850	0.46	+0.2
1,776,142	+		DDA3937_RS07850	0.46	+1.8
1,776,142	+		DDA3937_RS07850	0.46	-1.3
1,776,143	-		DDA3937_RS07850	0.46	+1.0
1,776,143	-		DDA3937_RS07850	0.46	+0.3
1,776,143	-		DDA3937_RS07850	0.46	-0.5
1,776,144	+		DDA3937_RS07850	0.46	-1.3
1,776,144	+		DDA3937_RS07850	0.46	-2.7
1,776,232	+		DDA3937_RS07850	0.49	+2.4
1,776,233	-		DDA3937_RS07850	0.49	-2.1
1,776,233	-		DDA3937_RS07850	0.49	+0.8
1,776,244	-		DDA3937_RS07850	0.49	-2.6
1,776,346	+		DDA3937_RS07850	0.53	+0.9
1,776,346	+		DDA3937_RS07850	0.53	+1.1
1,776,346	+		DDA3937_RS07850	0.53	-2.4
1,776,347	-		DDA3937_RS07850	0.53	-0.0
1,776,347	-		DDA3937_RS07850	0.53	-1.6
1,776,347	-		DDA3937_RS07850	0.53	+1.2
1,776,347	-		DDA3937_RS07850	0.53	-0.3
1,776,397	+		DDA3937_RS07850	0.54	-2.1
1,776,398	-				-0.1
1,776,398	-		DDA3937_RS07850	0.54	-0.5
1,776,399	+		DDA3937_RS07850	0.54	-0.8
1,776,399	+		DDA3937_RS07850	0.54	-0.8
1,776,475	+		DDA3937_RS07850	0.57	-1.1
1,776,475	+		DDA3937_RS07850	0.57	+0.2
1,776,475	+		DDA3937_RS07850	0.57	-2.1
1,776,475	+		DDA3937_RS07850	0.57	-1.6
1,776,475	+		DDA3937_RS07850	0.57	-1.5
1,776,476	-		DDA3937_RS07850	0.57	+1.3
1,776,476	-		DDA3937_RS07850	0.57	-2.1
1,776,476	-		DDA3937_RS07850	0.57	+2.9
1,776,694	-		DDA3937_RS07850	0.64	+2.5
1,776,694	-		DDA3937_RS07850	0.64	+2.3
1,776,787	+		DDA3937_RS07850	0.67	-1.3
1,776,787	+		DDA3937_RS07850	0.67	-0.1
1,776,787	+		DDA3937_RS07850	0.67	-1.5
1,776,787	+		DDA3937_RS07850	0.67	+0.2
1,776,787	+		DDA3937_RS07850	0.67	+2.8
1,776,966	+		DDA3937_RS07850	0.73	+0.2
1,777,076	-		DDA3937_RS07850	0.77	-2.6
1,777,076	-		DDA3937_RS07850	0.77	-2.0
1,777,076	-		DDA3937_RS07850	0.77	-0.8
1,777,076	-		DDA3937_RS07850	0.77	-1.6
1,777,291	+		DDA3937_RS07850	0.84	-2.7
1,777,292	-		DDA3937_RS07850	0.84	-2.6
1,777,292	-		DDA3937_RS07850	0.84	-2.2
1,777,292	-		DDA3937_RS07850	0.84	-1.6
1,777,292	-		DDA3937_RS07850	0.84	+1.0
1,777,302	-		DDA3937_RS07850	0.84	+3.1
1,777,348	-		DDA3937_RS07850	0.85	-0.8
1,777,412	-		DDA3937_RS07850	0.88	+0.6
1,777,426	+		DDA3937_RS07850	0.88	-1.9
1,777,426	+		DDA3937_RS07850	0.88	+2.2
1,777,426	+		DDA3937_RS07850	0.88	-2.1
1,777,427	-		DDA3937_RS07850	0.88	-2.6
1,777,427	-		DDA3937_RS07850	0.88	-2.6
1,777,427	-		DDA3937_RS07850	0.88	-2.4
1,777,427	-		DDA3937_RS07850	0.88	+1.1
1,777,579	+				+1.4
1,777,757	-				-2.9
1,777,789	+				+1.0
1,777,790	-				-2.1
1,777,803	+				+1.7
1,777,803	+				+0.7
1,777,824	+				+0.9
1,777,824	+				-0.2
1,777,824	+				-0.5
1,777,825	-				-3.1
1,777,825	-				-3.3
1,777,828	-				+2.3
1,777,881	+				-0.6
1,777,882	-				-2.9
1,777,929	+		DDA3937_RS07855	0.14	-0.8
1,777,999	+		DDA3937_RS07855	0.21	-1.9
1,778,104	-		DDA3937_RS07855	0.33	+1.0
1,778,104	-		DDA3937_RS07855	0.33	+1.2
1,778,165	-		DDA3937_RS07855	0.40	+3.2
1,778,203	-		DDA3937_RS07855	0.44	+0.2
1,778,252	+		DDA3937_RS07855	0.49	-0.1
1,778,253	-		DDA3937_RS07855	0.49	-2.3
1,778,256	+		DDA3937_RS07855	0.50	+2.5
1,778,256	+		DDA3937_RS07855	0.50	+3.6
1,778,257	-		DDA3937_RS07855	0.50	-2.1
1,778,257	-		DDA3937_RS07855	0.50	-1.1
1,778,257	-		DDA3937_RS07855	0.50	+1.3
1,778,257	-		DDA3937_RS07855	0.50	-3.3
1,778,257	-		DDA3937_RS07855	0.50	+2.5
1,778,257	-		DDA3937_RS07855	0.50	+0.8
1,778,275	+		DDA3937_RS07855	0.52	-0.0
1,778,276	-		DDA3937_RS07855	0.52	+0.2
1,778,444	-		DDA3937_RS07855	0.70	-1.5
1,778,479	+		DDA3937_RS07855	0.74	-2.9
1,778,479	+		DDA3937_RS07855	0.74	-2.4
1,778,479	+				+0.9
1,778,480	-		DDA3937_RS07855	0.74	-0.1
1,778,480	-		DDA3937_RS07855	0.74	+1.0
1,778,480	-		DDA3937_RS07855	0.74	-1.9
1,778,480	-		DDA3937_RS07855	0.74	+0.0
1,778,480	-		DDA3937_RS07855	0.74	-2.2
1,778,480	-		DDA3937_RS07855	0.74	+1.9
1,778,480	-		DDA3937_RS07855	0.74	-1.9
1,778,480	-		DDA3937_RS07855	0.74	-2.9
1,778,480	-		DDA3937_RS07855	0.74	-0.8
1,778,480	-		DDA3937_RS07855	0.74	-1.6
1,778,512	+		DDA3937_RS07855	0.78	-2.7
1,778,629	+				-0.5
1,778,629	+				-3.4
1,778,629	+				-1.8
1,778,630	-				+1.0
1,778,630	-				+1.3
1,778,700	+				-0.4
1,778,700	+				-2.8
1,778,701	-				-1.6
1,778,701	-				-3.1
1,778,701	-				-2.1
1,778,701	-				-1.8
1,778,701	-				-1.5
1,778,711	-				-1.2
1,778,741	-				-0.9