Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07400

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,669,766	+				-2.8
1,669,766	+				+1.5
1,669,795	-				-0.9
1,669,816	+				+0.1
1,669,816	+				-0.9
1,669,817	-				-2.2
1,669,817	-				+1.8
1,669,823	-				+0.0
1,669,826	-				-1.6
1,669,828	+				-0.1
1,669,828	+				-0.5
1,669,846	-				-0.1
1,669,846	-				+1.2
1,669,847	+				+0.2
1,669,848	-				-1.7
1,669,848	-				+2.8
1,669,848	-				+0.9
1,669,848	-				-0.5
1,669,869	-				-2.6
1,669,889	+				+0.3
1,669,924	+				-1.4
1,669,925	-				-0.1
1,669,925	-				+2.1
1,669,978	+				-2.1
1,669,979	-				+0.6
1,670,020	-				+0.2
1,670,059	-				-1.1
1,670,092	+				-0.7
1,670,093	-				-2.2
1,670,093	-				-0.4
1,670,093	-				+3.9
1,670,094	+				-0.1
1,670,094	+				+3.5
1,670,094	+				+0.3
1,670,094	+				-1.0
1,670,094	+				-0.1
1,670,094	+				-1.1
1,670,094	+				-2.9
1,670,094	+				-1.8
1,670,095	-				-0.9
1,670,095	-				+0.4
1,670,095	-				-2.8
1,670,095	-				-0.1
1,670,095	-				-0.1
1,670,095	-				+0.6
1,670,095	-				+0.5
1,670,095	-				-0.3
1,670,095	-				-0.7
1,670,095	-				+1.5
1,670,095	-				-0.3
1,670,095	-				-2.5
1,670,095	-				-0.9
1,670,097	+				-0.9
1,670,098	-				-2.4
1,670,101	+				-2.0
1,670,102	-				-3.2
1,670,103	+				-2.6
1,670,104	-				+0.8
1,670,104	-				-0.7
1,670,104	-				-0.1
1,670,105	+				-0.1
1,670,105	+				-0.0
1,670,124	-				-0.3
1,670,286	+				+1.7
1,670,324	+				-1.4
1,670,324	+				-2.3
1,670,440	-				+1.0
1,670,445	+				+1.8
1,670,449	+				-2.2
1,670,522	+				-0.5
1,670,522	+				+0.5
1,670,522	+				-0.5
1,670,555	+				-1.6
1,670,563	-				+2.2
1,670,613	-				-1.4
1,670,676	+				-2.1
1,670,676	+				-0.3
1,670,677	-				-1.1
1,670,677	-				-3.0
1,670,715	+				-0.7
1,670,715	+				-0.9
1,670,715	+				-0.2
1,670,715	+				-2.1
1,670,715	+				-3.5
1,670,716	-				-2.6
1,670,716	-				-2.0
1,670,720	+				-2.1
1,670,720	+				+0.0
1,670,720	+				-2.0
1,670,720	+				-1.6
1,670,721	-				-0.5
1,670,721	-				+0.4
1,670,721	-				+1.4
1,670,721	-				-1.9
1,670,733	+				-1.9
1,670,733	+				-0.3
1,670,733	+				+0.6
1,670,733	+				+0.4
1,670,733	+				-3.6
1,670,733	+				-3.3
1,670,733	+				+0.3
1,670,733	+				+1.7
1,670,734	-				+1.3
1,670,734	-				-1.7
1,670,734	-				-3.2
1,670,734	-				-1.7
1,670,737	+				-0.7
1,670,737	+				+0.6
1,670,737	+				+1.7
1,670,737	+				+2.4
1,670,737	+				+1.6
1,670,738	-				-1.9
1,670,738	-				+1.1
1,670,752	-				+1.3
1,670,800	-				-0.6
1,670,800	-				-1.7
1,670,888	+				+0.3
1,670,889	-				-0.9
1,671,122	-		DDA3937_RS07400	0.17	-3.9
1,671,122	-		DDA3937_RS07400	0.17	-3.1
1,671,140	-		DDA3937_RS07400	0.17	-2.6
1,671,458	+		DDA3937_RS07400	0.32	-1.1
1,671,458	+		DDA3937_RS07400	0.32	+0.4
1,671,459	-		DDA3937_RS07400	0.32	-3.1
1,671,462	-		DDA3937_RS07400	0.32	-0.0
1,671,462	-		DDA3937_RS07400	0.32	-2.8
1,671,497	-		DDA3937_RS07400	0.34	+0.7
1,671,509	+		DDA3937_RS07400	0.34	+0.2
1,671,510	-				+2.0
1,671,510	-		DDA3937_RS07400	0.34	-0.9
1,671,510	-		DDA3937_RS07400	0.34	+2.3
1,671,510	-		DDA3937_RS07400	0.34	-3.5
1,671,510	-		DDA3937_RS07400	0.34	-0.0
1,671,510	-		DDA3937_RS07400	0.34	+2.2
1,671,609	-		DDA3937_RS07400	0.39	+0.1
1,671,832	+		DDA3937_RS07400	0.49	-0.1
1,671,833	-		DDA3937_RS07400	0.49	-1.6
1,671,833	-		DDA3937_RS07400	0.49	+1.7
1,671,880	+		DDA3937_RS07400	0.51	-0.7
1,671,906	+		DDA3937_RS07400	0.53	+1.4
1,671,906	+		DDA3937_RS07400	0.53	+1.4
1,671,907	-		DDA3937_RS07400	0.53	+0.6
1,671,907	-		DDA3937_RS07400	0.53	-3.3
1,671,907	-		DDA3937_RS07400	0.53	+0.1
1,671,907	-		DDA3937_RS07400	0.53	-2.9
1,671,907	-		DDA3937_RS07400	0.53	+0.5
1,672,084	-		DDA3937_RS07400	0.61	-0.6
1,672,084	-		DDA3937_RS07400	0.61	-1.3
1,672,084	-		DDA3937_RS07400	0.61	-3.6
1,672,096	-		DDA3937_RS07400	0.61	+0.6
1,672,096	-		DDA3937_RS07400	0.61	-2.4
1,672,096	-		DDA3937_RS07400	0.61	-2.0
1,672,096	-		DDA3937_RS07400	0.61	-2.9
1,672,100	+		DDA3937_RS07400	0.61	+0.1
1,672,183	-		DDA3937_RS07400	0.65	-2.6
1,672,414	+		DDA3937_RS07400	0.76	-0.4
1,672,415	-		DDA3937_RS07400	0.76	-2.6
1,672,415	-		DDA3937_RS07400	0.76	-2.0
1,672,415	-		DDA3937_RS07400	0.76	-2.6
1,672,415	-		DDA3937_RS07400	0.76	-1.3
1,672,415	-		DDA3937_RS07400	0.76	-2.3
1,672,415	-		DDA3937_RS07400	0.76	-0.3
1,672,415	-		DDA3937_RS07400	0.76	+0.4
1,672,415	-		DDA3937_RS07400	0.76	-1.0
1,672,473	+		DDA3937_RS07400	0.79	-1.1
1,672,473	+		DDA3937_RS07400	0.79	+3.0
1,672,794	+				-1.6
1,672,794	+				+2.3
1,672,794	+				-1.6
1,672,795	-				-0.6
1,672,795	-				+0.2
1,672,795	-				-2.3
1,672,795	-				+3.1
1,672,795	-				-2.9
1,672,795	-				+0.4
1,672,795	-				-1.5
1,672,866	+				-1.4
1,672,866	+				-2.2
1,672,875	+				-0.3
1,672,875	+				-0.9
1,672,875	+				-0.9
1,672,875	+				+0.1
1,672,875	+				-1.1
1,672,875	+				-1.9
1,672,876	-				-1.6
1,672,876	-				-1.9
1,672,876	-				-2.8
1,672,876	-				-1.8
1,672,876	-				-1.1
1,672,890	+				-1.0
1,672,890	+				-2.1
1,672,890	+				-0.1
1,672,890	+				+0.7
1,672,891	-				-2.6
1,672,891	-				-1.9
1,672,891	-				+0.3
1,672,891	-				+1.2
1,672,891	-				-0.7
1,672,891	-				-0.1
1,672,891	-				+0.8
1,673,031	+				-0.7
1,673,053	+				-1.6
1,673,079	+				-1.9
1,673,079	+				-0.9
1,673,080	-				-3.2
1,673,080	-				-0.4
1,673,087	+				-3.0
1,673,088	-				-1.7
1,673,094	+				-1.7
1,673,095	-				-0.6
1,673,095	-				-4.2
1,673,095	-				+0.3
1,673,151	+				-1.4
1,673,151	+				-1.7
1,673,151	+				-2.6
1,673,223	+				-0.9
1,673,223	+				-0.5
1,673,223	+				-2.7
1,673,223	+				+1.0
1,673,223	+				-1.6
1,673,224	-				-0.1
1,673,224	-				+0.3
1,673,224	-				-0.1
1,673,224	-				-0.9
1,673,224	-				-1.6
1,673,224	-				-1.7
1,673,224	-				-1.4
1,673,232	+				+1.7
1,673,233	-				-1.1
1,673,233	-				-1.1
1,673,365	-		DDA3937_RS07405	0.16	-1.7
1,673,427	+		DDA3937_RS07405	0.18	-1.6
1,673,428	-		DDA3937_RS07405	0.19	-2.9
1,673,607	+		DDA3937_RS07405	0.27	-3.7
1,673,607	+		DDA3937_RS07405	0.27	-3.1
1,673,608	-		DDA3937_RS07405	0.27	-0.9
1,673,632	-		DDA3937_RS07405	0.28	-0.6
1,673,632	-		DDA3937_RS07405	0.28	-3.8
1,673,636	-		DDA3937_RS07405	0.28	-0.4
1,673,644	-		DDA3937_RS07405	0.29	+1.3
1,673,646	+		DDA3937_RS07405	0.29	-1.8
1,673,646	+		DDA3937_RS07405	0.29	-1.4
1,673,646	+		DDA3937_RS07405	0.29	-2.4
1,673,698	-		DDA3937_RS07405	0.31	+0.0
1,673,784	+		DDA3937_RS07405	0.35	+0.2
1,673,784	+		DDA3937_RS07405	0.35	-2.3
1,673,784	+		DDA3937_RS07405	0.35	+1.0
1,673,817	+		DDA3937_RS07405	0.37	+0.0
1,673,818	-		DDA3937_RS07405	0.37	-2.2
1,673,818	-		DDA3937_RS07405	0.37	-0.7
1,673,818	-		DDA3937_RS07405	0.37	+2.5