Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07350

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,655,172	+				-0.5
1,655,234	+		DDA3937_RS07345	0.32	+0.5
1,655,234	+		DDA3937_RS07345	0.32	-1.1
1,655,235	-		DDA3937_RS07345	0.32	-1.1
1,655,239	-		DDA3937_RS07345	0.32	+0.3
1,655,269	-		DDA3937_RS07345	0.35	+1.2
1,655,269	-		DDA3937_RS07345	0.35	-0.1
1,655,276	+		DDA3937_RS07345	0.35	+0.3
1,655,276	+		DDA3937_RS07345	0.35	-2.1
1,655,277	-		DDA3937_RS07345	0.35	+0.1
1,655,399	+		DDA3937_RS07345	0.46	+0.2
1,655,399	+		DDA3937_RS07345	0.46	-1.9
1,655,400	-		DDA3937_RS07345	0.46	+0.5
1,655,400	-		DDA3937_RS07345	0.46	-0.6
1,655,400	-		DDA3937_RS07345	0.46	+0.6
1,655,401	+		DDA3937_RS07345	0.46	-0.8
1,655,401	+		DDA3937_RS07345	0.46	+0.5
1,655,401	+		DDA3937_RS07345	0.46	-2.5
1,655,401	+		DDA3937_RS07345	0.46	-1.1
1,655,401	+		DDA3937_RS07345	0.46	-3.6
1,655,401	+		DDA3937_RS07345	0.46	-2.5
1,655,402	-				+2.0
1,655,402	-		DDA3937_RS07345	0.46	+2.9
1,655,420	+		DDA3937_RS07345	0.47	-1.1
1,655,470	+		DDA3937_RS07345	0.52	-1.1
1,655,470	+		DDA3937_RS07345	0.52	-1.1
1,655,470	+		DDA3937_RS07345	0.52	-1.7
1,655,470	+		DDA3937_RS07345	0.52	-2.4
1,655,471	-		DDA3937_RS07345	0.52	+1.5
1,655,471	-		DDA3937_RS07345	0.52	-0.2
1,655,471	-		DDA3937_RS07345	0.52	-0.6
1,655,471	-		DDA3937_RS07345	0.52	-3.4
1,655,471	-		DDA3937_RS07345	0.52	-1.0
1,655,473	+		DDA3937_RS07345	0.52	-0.7
1,655,474	-		DDA3937_RS07345	0.52	-0.5
1,655,474	-		DDA3937_RS07345	0.52	-1.4
1,655,474	-		DDA3937_RS07345	0.52	-1.9
1,655,474	-		DDA3937_RS07345	0.52	-2.1
1,655,514	-		DDA3937_RS07345	0.55	-1.4
1,655,527	+		DDA3937_RS07345	0.56	-2.7
1,655,527	+		DDA3937_RS07345	0.56	-2.4
1,655,527	+		DDA3937_RS07345	0.56	+1.5
1,655,527	+		DDA3937_RS07345	0.56	-2.6
1,655,527	+		DDA3937_RS07345	0.56	-1.1
1,655,527	+		DDA3937_RS07345	0.56	-2.4
1,655,527	+		DDA3937_RS07345	0.56	-0.9
1,655,528	-		DDA3937_RS07345	0.56	-0.5
1,655,528	-				+0.5
1,655,528	-		DDA3937_RS07345	0.56	+0.6
1,655,528	-		DDA3937_RS07345	0.56	-1.3
1,655,528	-		DDA3937_RS07345	0.56	-0.0
1,655,530	+		DDA3937_RS07345	0.56	+1.1
1,655,531	-		DDA3937_RS07345	0.57	-0.5
1,655,531	-		DDA3937_RS07345	0.57	-0.4
1,655,531	-		DDA3937_RS07345	0.57	-0.8
1,655,551	-		DDA3937_RS07345	0.58	-2.4
1,655,572	+		DDA3937_RS07345	0.60	-0.4
1,655,572	+		DDA3937_RS07345	0.60	-2.1
1,655,572	+		DDA3937_RS07345	0.60	+0.2
1,655,573	-				-0.9
1,655,573	-		DDA3937_RS07345	0.60	-0.1
1,655,573	-		DDA3937_RS07345	0.60	-1.7
1,655,581	+		DDA3937_RS07345	0.61	-0.1
1,655,582	-		DDA3937_RS07345	0.61	-1.4
1,655,582	-		DDA3937_RS07345	0.61	+0.9
1,655,606	-		DDA3937_RS07345	0.63	+2.1
1,655,606	-		DDA3937_RS07345	0.63	-1.5
1,655,616	-		DDA3937_RS07345	0.64	+2.5
1,655,616	-		DDA3937_RS07345	0.64	+2.6
1,655,747	+		DDA3937_RS07345	0.75	-2.4
1,655,775	+		DDA3937_RS07345	0.77	-1.1
1,655,903	+		DDA3937_RS07345	0.88	-0.6
1,655,904	-		DDA3937_RS07345	0.88	+1.8
1,655,922	+		DDA3937_RS07345	0.89	-3.0
1,655,923	-		DDA3937_RS07345	0.89	-3.3
1,655,958	+				-2.4
1,655,990	+				-0.6
1,655,991	-				-0.1
1,655,991	-				+2.1
1,656,014	+				-3.3
1,656,015	-				-0.5
1,656,015	-				-1.5
1,656,025	-				-0.1
1,656,072	+				-1.7
1,656,073	-				-1.1
1,656,073	-				-2.2
1,656,115	+				-0.2
1,656,116	-				-1.7
1,656,133	+				-2.5
1,656,133	+				-2.1
1,656,134	-				+0.1
1,656,149	+				-3.4
1,656,149	+				-1.5
1,656,150	-				+2.1
1,656,150	-				+0.1
1,656,150	-				-1.7
1,656,150	-				-1.7
1,656,152	+				-0.3
1,656,152	+				-2.8
1,656,152	+				-0.1
1,656,152	+				+1.5
1,656,153	-				-1.6
1,656,153	-				+1.7
1,656,197	+				-0.1
1,656,198	-				-1.4
1,656,227	+				-1.1
1,656,227	+				+0.7
1,656,227	+				-0.8
1,656,228	-				-0.9
1,656,228	-				-1.1
1,656,230	+				-0.1
1,656,231	-				+1.0
1,656,231	-				-2.2
1,656,244	+				-3.6
1,656,245	-				-0.1
1,656,295	+				+1.2
1,656,296	-				-2.5
1,656,388	+		DDA3937_RS07350	0.12	-1.4
1,656,436	+		DDA3937_RS07350	0.15	+0.8
1,656,437	-		DDA3937_RS07350	0.15	-0.5
1,656,442	+		DDA3937_RS07350	0.16	-1.3
1,656,442	+		DDA3937_RS07350	0.16	+0.9
1,656,442	+		DDA3937_RS07350	0.16	+1.1
1,656,443	-		DDA3937_RS07350	0.16	-1.4
1,656,443	-		DDA3937_RS07350	0.16	+0.4
1,656,518	+		DDA3937_RS07350	0.20	-2.5
1,656,589	+		DDA3937_RS07350	0.24	-0.5
1,656,612	+		DDA3937_RS07350	0.25	-1.1
1,656,612	+		DDA3937_RS07350	0.25	-1.4
1,656,613	-		DDA3937_RS07350	0.25	-1.0
1,656,613	-		DDA3937_RS07350	0.25	-1.4
1,656,613	-		DDA3937_RS07350	0.25	-0.5
1,656,655	-		DDA3937_RS07350	0.28	+2.9
1,656,655	-		DDA3937_RS07350	0.28	+0.9
1,656,659	+		DDA3937_RS07350	0.28	-2.1
1,656,659	+		DDA3937_RS07350	0.28	-2.0
1,656,659	+		DDA3937_RS07350	0.28	+1.3
1,656,660	-		DDA3937_RS07350	0.28	-3.7
1,656,660	-		DDA3937_RS07350	0.28	-0.4
1,656,660	-		DDA3937_RS07350	0.28	+1.9
1,656,660	-		DDA3937_RS07350	0.28	+1.5
1,656,660	-		DDA3937_RS07350	0.28	+2.0
1,656,687	+		DDA3937_RS07350	0.29	+0.9
1,656,709	+		DDA3937_RS07350	0.31	-1.4
1,656,709	+		DDA3937_RS07350	0.31	-0.3
1,656,710	-		DDA3937_RS07350	0.31	+0.5
1,656,710	-		DDA3937_RS07350	0.31	-2.5
1,656,710	-		DDA3937_RS07350	0.31	-2.0
1,656,711	+		DDA3937_RS07350	0.31	-2.5
1,656,712	-		DDA3937_RS07350	0.31	+1.0
1,656,712	-		DDA3937_RS07350	0.31	-1.1
1,656,712	-		DDA3937_RS07350	0.31	+1.0
1,656,744	+		DDA3937_RS07350	0.33	-0.6
1,656,747	+		DDA3937_RS07350	0.33	+1.2
1,656,748	-		DDA3937_RS07350	0.33	-2.5
1,656,748	-		DDA3937_RS07350	0.33	-0.7
1,656,767	+		DDA3937_RS07350	0.34	-0.9
1,656,768	-		DDA3937_RS07350	0.34	+0.5
1,656,802	-		DDA3937_RS07350	0.36	+0.3
1,656,825	+		DDA3937_RS07350	0.37	+1.0
1,656,826	-		DDA3937_RS07350	0.37	-2.5
1,656,826	-		DDA3937_RS07350	0.37	-0.2
1,656,826	-		DDA3937_RS07350	0.37	-1.7
1,656,853	+		DDA3937_RS07350	0.39	-1.4
1,656,853	+				-0.1
1,656,858	+		DDA3937_RS07350	0.39	-3.0
1,656,859	-		DDA3937_RS07350	0.39	-1.4
1,656,862	-		DDA3937_RS07350	0.39	-3.6
1,656,862	-		DDA3937_RS07350	0.39	-0.5
1,656,891	-		DDA3937_RS07350	0.41	-1.4
1,656,935	-		DDA3937_RS07350	0.43	+3.3
1,656,935	-		DDA3937_RS07350	0.43	+0.0
1,656,935	-		DDA3937_RS07350	0.43	+0.3
1,656,951	-		DDA3937_RS07350	0.44	+0.5
1,657,003	-		DDA3937_RS07350	0.47	+0.1
1,657,018	-		DDA3937_RS07350	0.48	-3.2
1,657,021	-		DDA3937_RS07350	0.48	-3.3
1,657,021	-		DDA3937_RS07350	0.48	-0.1
1,657,032	-		DDA3937_RS07350	0.49	-2.6
1,657,032	-		DDA3937_RS07350	0.49	-3.2
1,657,052	-		DDA3937_RS07350	0.50	+1.3
1,657,075	+		DDA3937_RS07350	0.51	-1.5
1,657,076	-		DDA3937_RS07350	0.51	-1.4
1,657,076	-		DDA3937_RS07350	0.51	-2.0
1,657,137	-		DDA3937_RS07350	0.55	-1.1
1,657,140	+		DDA3937_RS07350	0.55	+0.1
1,657,140	+		DDA3937_RS07350	0.55	-0.5
1,657,140	+		DDA3937_RS07350	0.55	-2.5
1,657,140	+		DDA3937_RS07350	0.55	+0.2
1,657,141	-		DDA3937_RS07350	0.55	-4.0
1,657,141	-		DDA3937_RS07350	0.55	-2.4
1,657,141	-		DDA3937_RS07350	0.55	-2.0
1,657,141	-		DDA3937_RS07350	0.55	-2.5
1,657,141	-		DDA3937_RS07350	0.55	-3.2
1,657,152	+		DDA3937_RS07350	0.55	+0.2
1,657,152	+		DDA3937_RS07350	0.55	+1.7
1,657,153	-		DDA3937_RS07350	0.56	-1.8
1,657,153	-		DDA3937_RS07350	0.56	-3.2
1,657,153	-		DDA3937_RS07350	0.56	-0.9
1,657,153	-		DDA3937_RS07350	0.56	-4.0
1,657,153	-		DDA3937_RS07350	0.56	-1.9
1,657,165	+		DDA3937_RS07350	0.56	-1.4
1,657,192	+		DDA3937_RS07350	0.58	-1.9
1,657,296	+		DDA3937_RS07350	0.64	-1.0
1,657,296	+		DDA3937_RS07350	0.64	-1.4
1,657,297	-		DDA3937_RS07350	0.64	-0.5
1,657,297	-		DDA3937_RS07350	0.64	+1.6
1,657,300	+		DDA3937_RS07350	0.64	-2.0
1,657,301	-				+0.5
1,657,315	+		DDA3937_RS07350	0.65	-0.2
1,657,315	+		DDA3937_RS07350	0.65	-3.5
1,657,316	-				-1.1
1,657,316	-				+0.5
1,657,316	-		DDA3937_RS07350	0.65	-0.8
1,657,328	+		DDA3937_RS07350	0.65	+0.5
1,657,328	+		DDA3937_RS07350	0.65	+0.5
1,657,328	+		DDA3937_RS07350	0.65	+0.4
1,657,329	-		DDA3937_RS07350	0.65	-0.2
1,657,329	-		DDA3937_RS07350	0.65	-1.2
1,657,331	+		DDA3937_RS07350	0.66	-1.5
1,657,331	+		DDA3937_RS07350	0.66	-2.5
1,657,331	+		DDA3937_RS07350	0.66	-0.9
1,657,332	-		DDA3937_RS07350	0.66	-0.4
1,657,332	-		DDA3937_RS07350	0.66	-1.3
1,657,332	-		DDA3937_RS07350	0.66	-0.1
1,657,405	-		DDA3937_RS07350	0.70	-3.5
1,657,492	+		DDA3937_RS07350	0.75	-2.1
1,657,495	+		DDA3937_RS07350	0.75	+2.4
1,657,495	+		DDA3937_RS07350	0.75	+0.5
1,657,507	+		DDA3937_RS07350	0.75	-0.1
1,657,509	+		DDA3937_RS07350	0.76	-2.2
1,657,510	-		DDA3937_RS07350	0.76	-2.4
1,657,582	+		DDA3937_RS07350	0.80	-1.0
1,657,582	+		DDA3937_RS07350	0.80	-0.8
1,657,583	-		DDA3937_RS07350	0.80	+0.6
1,657,583	-		DDA3937_RS07350	0.80	-0.7
1,657,583	-		DDA3937_RS07350	0.80	-1.4
1,657,636	-		DDA3937_RS07350	0.83	-2.5
1,657,636	-		DDA3937_RS07350	0.83	+0.4
1,657,638	+		DDA3937_RS07350	0.83	+1.9
1,657,638	+		DDA3937_RS07350	0.83	-2.6
1,657,638	+		DDA3937_RS07350	0.83	+0.7
1,657,638	+		DDA3937_RS07350	0.83	-0.1
1,657,638	+		DDA3937_RS07350	0.83	-0.9
1,657,638	+		DDA3937_RS07350	0.83	+1.1
1,657,638	+		DDA3937_RS07350	0.83	-0.9
1,657,638	+		DDA3937_RS07350	0.83	-1.7
1,657,639	-				-1.4
1,657,639	-		DDA3937_RS07350	0.83	-0.9
1,657,655	+		DDA3937_RS07350	0.84	-1.7
1,657,656	-				-0.9
1,657,656	-		DDA3937_RS07350	0.84	-0.9
1,657,656	-		DDA3937_RS07350	0.84	+1.1
1,657,675	+		DDA3937_RS07350	0.85	+3.3
1,657,684	+		DDA3937_RS07350	0.85	+0.3
1,657,684	+		DDA3937_RS07350	0.85	-1.4
1,657,689	+		DDA3937_RS07350	0.86	+2.8
1,657,689	+		DDA3937_RS07350	0.86	+1.7
1,657,855	+				+0.2
1,657,855	+				+1.0
1,657,890	-				-0.1
1,657,905	+				+1.0
1,657,905	+				+1.2
1,657,906	-				-0.9
1,657,932	-				+0.6
1,658,020	+				-2.9
1,658,021	-				-1.4
1,658,071	+		DDA3937_RS07355	0.15	-0.8
1,658,078	+		DDA3937_RS07355	0.16	-2.5
1,658,079	-		DDA3937_RS07355	0.16	-0.7
1,658,079	-		DDA3937_RS07355	0.16	-2.1
1,658,114	-		DDA3937_RS07355	0.20	+1.2
1,658,114	-		DDA3937_RS07355	0.20	-0.1
1,658,129	-		DDA3937_RS07355	0.22	+0.9
1,658,184	-		DDA3937_RS07355	0.28	-1.5
1,658,320	+		DDA3937_RS07355	0.44	-2.6
1,658,376	+		DDA3937_RS07355	0.51	+0.5
1,658,376	+		DDA3937_RS07355	0.51	-1.2
1,658,376	+				+1.5
1,658,377	-		DDA3937_RS07355	0.51	-1.9
1,658,380	+		DDA3937_RS07355	0.51	-0.2
1,658,380	+		DDA3937_RS07355	0.51	-1.7
1,658,381	-		DDA3937_RS07355	0.51	-2.2
1,658,385	+		DDA3937_RS07355	0.52	-0.9
1,658,386	-				-0.5
1,658,443	+		DDA3937_RS07355	0.59	+1.7
1,658,443	+		DDA3937_RS07355	0.59	-1.4
1,658,451	+		DDA3937_RS07355	0.60	-0.1
1,658,457	+		DDA3937_RS07355	0.60	-1.1
1,658,457	+		DDA3937_RS07355	0.60	-2.8
1,658,525	-		DDA3937_RS07355	0.68	-2.5
1,658,571	-		DDA3937_RS07355	0.74	-1.7
1,658,583	+				-0.1
1,658,609	-		DDA3937_RS07355	0.78	-3.5
1,658,671	+		DDA3937_RS07355	0.85	+0.2
1,658,671	+		DDA3937_RS07355	0.85	-3.1
1,658,672	-		DDA3937_RS07355	0.85	+0.1
1,658,672	-		DDA3937_RS07355	0.85	-1.4
1,658,676	+		DDA3937_RS07355	0.86	-0.3
1,658,677	-		DDA3937_RS07355	0.86	+0.1
1,658,681	-		DDA3937_RS07355	0.86	-1.5
1,658,697	+				-0.9
1,658,698	-		DDA3937_RS07355	0.88	-0.9
1,658,698	-		DDA3937_RS07355	0.88	-0.2
1,658,698	-		DDA3937_RS07355	0.88	-2.4
1,658,701	+		DDA3937_RS07355	0.89	-2.1
1,658,813	-				-1.4