Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07185

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,618,065	+		DDA3937_RS07175	0.70	+2.4
1,618,168	+		DDA3937_RS07175	0.81	-1.6
1,618,376	+				+0.5
1,618,376	+				-0.9
1,618,376	+				+1.7
1,618,377	-				-1.7
1,618,431	-				+1.5
1,618,452	+				+1.3
1,618,453	-				+0.0
1,618,465	+				-0.0
1,618,465	+				-2.0
1,618,466	-				-2.5
1,618,466	-				-2.0
1,618,478	-				+1.2
1,618,498	+				+1.7
1,618,499	-				-0.4
1,618,499	-				-0.5
1,618,505	-				-2.2
1,618,505	-				-1.3
1,618,558	+		DDA3937_RS07180	0.17	-0.6
1,618,603	+		DDA3937_RS07180	0.28	+1.4
1,618,604	-		DDA3937_RS07180	0.28	-0.2
1,618,604	-		DDA3937_RS07180	0.28	-3.6
1,618,746	+		DDA3937_RS07180	0.64	-1.9
1,618,746	+		DDA3937_RS07180	0.64	+2.7
1,618,747	-				-0.9
1,618,747	-		DDA3937_RS07180	0.65	+1.3
1,618,821	-		DDA3937_RS07180	0.83	+0.7
1,618,862	+				+1.7
1,618,916	-				-1.3
1,618,935	+				+0.3
1,618,935	+				-1.6
1,618,935	+				+0.9
1,618,935	+				-1.4
1,618,935	+				+1.3
1,618,936	-				+1.8
1,618,936	-				-0.6
1,618,936	-				+0.4
1,618,945	+				-2.2
1,618,945	+				+0.4
1,618,945	+				+3.9
1,618,945	+				+2.0
1,618,945	+				+1.1
1,618,946	-				-1.7
1,618,946	-				-3.2
1,618,981	-				-1.6
1,618,981	-				-1.7
1,618,981	-				-1.4
1,619,019	-				+0.9
1,619,019	-				-2.9
1,619,121	+		DDA3937_RS07185	0.21	-2.8
1,619,122	-		DDA3937_RS07185	0.22	-0.9
1,619,122	-		DDA3937_RS07185	0.22	-0.9
1,619,122	-		DDA3937_RS07185	0.22	-1.9
1,619,187	+		DDA3937_RS07185	0.30	-0.6
1,619,188	-		DDA3937_RS07185	0.30	-1.6
1,619,228	-		DDA3937_RS07185	0.35	+0.9
1,619,266	-		DDA3937_RS07185	0.40	-0.2
1,619,286	+		DDA3937_RS07185	0.43	-0.5
1,619,287	-		DDA3937_RS07185	0.43	-2.6
1,619,311	+		DDA3937_RS07185	0.46	+0.6
1,619,311	+		DDA3937_RS07185	0.46	+0.4
1,619,311	+		DDA3937_RS07185	0.46	-0.2
1,619,311	+		DDA3937_RS07185	0.46	-0.6
1,619,311	+		DDA3937_RS07185	0.46	-1.8
1,619,311	+		DDA3937_RS07185	0.46	-2.1
1,619,311	+		DDA3937_RS07185	0.46	+1.7
1,619,311	+		DDA3937_RS07185	0.46	-1.6
1,619,311	+		DDA3937_RS07185	0.46	+1.0
1,619,311	+		DDA3937_RS07185	0.46	+1.1
1,619,311	+		DDA3937_RS07185	0.46	+0.9
1,619,311	+		DDA3937_RS07185	0.46	+1.5
1,619,312	-		DDA3937_RS07185	0.46	-1.4
1,619,312	-		DDA3937_RS07185	0.46	-1.9
1,619,312	-		DDA3937_RS07185	0.46	-0.9
1,619,312	-		DDA3937_RS07185	0.46	-1.0
1,619,312	-		DDA3937_RS07185	0.46	-2.7
1,619,314	+		DDA3937_RS07185	0.47	-0.8
1,619,314	+		DDA3937_RS07185	0.47	+2.3
1,619,315	-		DDA3937_RS07185	0.47	-1.6
1,619,315	-		DDA3937_RS07185	0.47	-2.7
1,619,315	-		DDA3937_RS07185	0.47	-1.6
1,619,315	-		DDA3937_RS07185	0.47	-0.7
1,619,364	-		DDA3937_RS07185	0.53	-0.9
1,619,364	-		DDA3937_RS07185	0.53	-1.3
1,619,366	+		DDA3937_RS07185	0.53	-1.2
1,619,367	-		DDA3937_RS07185	0.54	-0.6
1,619,378	-		DDA3937_RS07185	0.55	-1.3
1,619,410	-		DDA3937_RS07185	0.59	-2.5
1,619,548	+		DDA3937_RS07185	0.77	-0.4
1,619,548	+		DDA3937_RS07185	0.77	-0.2
1,619,549	-		DDA3937_RS07185	0.77	+3.7
1,619,549	-		DDA3937_RS07185	0.77	-2.6
1,619,549	-		DDA3937_RS07185	0.77	-1.9
1,619,549	-		DDA3937_RS07185	0.77	-1.8
1,619,564	-		DDA3937_RS07185	0.79	-1.4
1,619,719	+				-1.5
1,619,742	+				-0.6
1,619,807	-				+1.8
1,619,815	+				-0.8
1,619,815	+				-2.4
1,619,815	+				-0.2
1,619,815	+				-1.4
1,619,815	+				-0.4
1,619,818	+				-1.4
1,619,818	+				-1.4
1,619,818	+				+1.8
1,619,819	-				-1.4
1,619,853	-				-1.6
1,620,009	-				+0.8
1,620,044	+				+0.3
1,620,044	+				-1.0
1,620,044	+				-2.5
1,620,044	+				+0.8
1,620,044	+				-2.8
1,620,045	-				-1.9
1,620,045	-				-2.5
1,620,045	-				-1.4
1,620,045	-				+1.0
1,620,045	-				-0.4
1,620,064	-				+1.0
1,620,100	-				-3.0
1,620,109	-				+1.9
1,620,109	-				-0.6
1,620,465	-		DDA3937_RS07190	0.25	+0.8
1,620,465	-		DDA3937_RS07190	0.25	-2.8
1,620,601	+		DDA3937_RS07190	0.33	+0.8
1,620,601	+		DDA3937_RS07190	0.33	-0.3
1,620,601	+		DDA3937_RS07190	0.33	-2.2
1,620,601	+		DDA3937_RS07190	0.33	-0.6
1,620,601	+		DDA3937_RS07190	0.33	-1.5
1,620,601	+		DDA3937_RS07190	0.33	-1.7
1,620,601	+		DDA3937_RS07190	0.33	-2.3
1,620,601	+		DDA3937_RS07190	0.33	-1.4
1,620,601	+		DDA3937_RS07190	0.33	-1.2
1,620,601	+		DDA3937_RS07190	0.33	+1.7
1,620,602	-		DDA3937_RS07190	0.33	+1.3
1,620,602	-		DDA3937_RS07190	0.33	+0.2
1,620,602	-		DDA3937_RS07190	0.33	+0.3
1,620,602	-		DDA3937_RS07190	0.33	-2.9
1,620,602	-		DDA3937_RS07190	0.33	+1.5
1,620,602	-		DDA3937_RS07190	0.33	+0.4
1,620,602	-		DDA3937_RS07190	0.33	+1.9
1,620,602	-		DDA3937_RS07190	0.33	-0.1
1,620,602	-		DDA3937_RS07190	0.33	+3.0
1,620,603	+		DDA3937_RS07190	0.33	+2.2
1,620,603	+		DDA3937_RS07190	0.33	-0.7
1,620,603	+		DDA3937_RS07190	0.33	+1.0
1,620,628	+		DDA3937_RS07190	0.35	-1.0
1,620,628	+		DDA3937_RS07190	0.35	-1.1
1,620,628	+		DDA3937_RS07190	0.35	-1.6
1,620,628	+		DDA3937_RS07190	0.35	+0.5
1,620,628	+		DDA3937_RS07190	0.35	+2.2
1,620,629	-		DDA3937_RS07190	0.35	-0.7
1,620,629	-		DDA3937_RS07190	0.35	-0.5
1,620,645	+		DDA3937_RS07190	0.36	-1.4
1,620,646	-		DDA3937_RS07190	0.36	-2.2