Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07060

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,582,449	+				-1.2
1,582,449	+				+2.2
1,582,449	+				+0.6
1,582,449	+				-1.6
1,582,449	+				+1.0
1,582,450	-				-1.9
1,582,450	-				+0.1
1,582,572	+				+0.8
1,582,572	+				+0.6
1,582,572	+				+1.7
1,582,572	+				+2.0
1,582,572	+				-3.0
1,582,572	+				+0.4
1,582,573	-				-2.6
1,582,577	-				-1.6
1,582,577	-				-0.1
1,582,577	-				-0.7
1,582,596	+				-0.6
1,582,596	+				-1.1
1,582,596	+				+1.5
1,582,596	+				+3.9
1,582,596	+				-1.1
1,582,597	-				+1.7
1,582,637	-				+1.6
1,582,637	-				-0.2
1,582,673	-		DDA3937_RS07055	0.11	-0.9
1,582,787	+		DDA3937_RS07055	0.25	+1.2
1,582,787	+		DDA3937_RS07055	0.25	-0.2
1,582,787	+		DDA3937_RS07055	0.25	+1.8
1,582,787	+		DDA3937_RS07055	0.25	-0.6
1,582,787	+		DDA3937_RS07055	0.25	-0.6
1,582,787	+		DDA3937_RS07055	0.25	-2.3
1,582,787	+		DDA3937_RS07055	0.25	-1.7
1,582,787	+		DDA3937_RS07055	0.25	-1.5
1,582,787	+		DDA3937_RS07055	0.25	-2.3
1,582,787	+		DDA3937_RS07055	0.25	-0.8
1,582,788	-		DDA3937_RS07055	0.25	-2.1
1,582,788	-		DDA3937_RS07055	0.25	+1.4
1,582,788	-		DDA3937_RS07055	0.25	+0.6
1,582,788	-		DDA3937_RS07055	0.25	+0.6
1,582,788	-		DDA3937_RS07055	0.25	+2.0
1,582,788	-		DDA3937_RS07055	0.25	-1.7
1,582,788	-		DDA3937_RS07055	0.25	+1.0
1,582,789	+		DDA3937_RS07055	0.25	+0.8
1,582,789	+		DDA3937_RS07055	0.25	+2.3
1,582,789	+		DDA3937_RS07055	0.25	-0.2
1,582,789	+		DDA3937_RS07055	0.25	-2.4
1,582,789	+		DDA3937_RS07055	0.25	-0.4
1,582,790	-		DDA3937_RS07055	0.26	-2.0
1,582,790	-		DDA3937_RS07055	0.26	+1.4
1,582,876	+		DDA3937_RS07055	0.37	-0.6
1,582,876	+		DDA3937_RS07055	0.37	+1.6
1,582,876	+		DDA3937_RS07055	0.37	+0.8
1,582,876	+		DDA3937_RS07055	0.37	+3.9
1,582,877	-		DDA3937_RS07055	0.37	+0.2
1,583,058	+		DDA3937_RS07055	0.60	+0.3
1,583,059	-		DDA3937_RS07055	0.60	-1.4
1,583,059	-		DDA3937_RS07055	0.60	+0.0
1,583,062	+		DDA3937_RS07055	0.61	-2.3
1,583,062	+		DDA3937_RS07055	0.61	-0.4
1,583,062	+		DDA3937_RS07055	0.61	-1.8
1,583,063	-		DDA3937_RS07055	0.61	+0.3
1,583,063	-		DDA3937_RS07055	0.61	+0.9
1,583,303	-				+1.1
1,583,303	-				+1.2
1,583,308	+				-1.9
1,583,308	+				-1.9
1,583,357	+				-0.0
1,583,357	+				+0.5
1,583,358	-				-2.3
1,583,358	-				+0.3
1,583,360	+				-1.1
1,583,360	+				+1.0
1,583,360	+				-1.4
1,583,361	-				-2.1
1,583,361	-				+2.1
1,583,365	+				-3.7
1,583,366	-				-2.1
1,583,366	-				-1.1
1,583,366	-				-1.9
1,583,376	+				-0.9
1,583,376	+				+0.7
1,583,376	+				+0.4
1,583,377	-				-1.4
1,583,377	-				-0.1
1,583,377	-				+1.4
1,583,762	-		DDA3937_RS07060	0.14	+0.9
1,583,924	-		DDA3937_RS07060	0.21	-2.7
1,583,924	-		DDA3937_RS07060	0.21	+1.8
1,583,924	-		DDA3937_RS07060	0.21	-2.7
1,583,963	+		DDA3937_RS07060	0.22	+2.8
1,584,067	-		DDA3937_RS07060	0.26	+1.1
1,584,330	+		DDA3937_RS07060	0.36	+0.8
1,584,330	+		DDA3937_RS07060	0.36	+1.1
1,584,360	+		DDA3937_RS07060	0.37	-0.9
1,584,388	+		DDA3937_RS07060	0.38	+0.5
1,584,388	+		DDA3937_RS07060	0.38	-0.2
1,584,389	-		DDA3937_RS07060	0.38	+0.6
1,584,389	-				-0.6
1,584,397	+		DDA3937_RS07060	0.39	+0.3
1,584,398	-		DDA3937_RS07060	0.39	+0.1
1,584,503	-		DDA3937_RS07060	0.43	+0.9
1,584,571	+		DDA3937_RS07060	0.45	+2.6
1,584,571	+		DDA3937_RS07060	0.45	+2.4
1,584,571	+		DDA3937_RS07060	0.45	-2.7
1,584,571	+		DDA3937_RS07060	0.45	+1.2
1,584,571	+		DDA3937_RS07060	0.45	-3.1
1,584,572	-		DDA3937_RS07060	0.45	+2.9
1,584,573	+		DDA3937_RS07060	0.45	-1.2
1,584,574	-		DDA3937_RS07060	0.45	+2.1
1,584,574	-		DDA3937_RS07060	0.45	+0.4
1,584,574	-		DDA3937_RS07060	0.45	+1.7
1,584,611	+		DDA3937_RS07060	0.47	-1.2
1,584,611	+		DDA3937_RS07060	0.47	-0.4
1,585,000	-		DDA3937_RS07060	0.62	+0.1
1,585,010	+		DDA3937_RS07060	0.62	-2.2
1,585,011	-		DDA3937_RS07060	0.62	-0.6
1,585,096	+		DDA3937_RS07060	0.65	+0.7
1,585,097	-		DDA3937_RS07060	0.65	-1.2
1,585,286	-		DDA3937_RS07060	0.73	-0.9
1,585,286	-		DDA3937_RS07060	0.73	+2.4
1,585,340	+		DDA3937_RS07060	0.75	-2.7
1,585,360	+		DDA3937_RS07060	0.75	-1.5
1,585,361	-		DDA3937_RS07060	0.76	+0.5
1,585,474	+		DDA3937_RS07060	0.80	+1.1
1,585,475	-		DDA3937_RS07060	0.80	+1.7
1,585,700	-		DDA3937_RS07060	0.88	-0.9
1,585,700	-		DDA3937_RS07060	0.88	-0.2
1,586,152	+				-2.5
1,586,152	+				+2.2
1,586,226	+		DDA3937_RS07065	0.14	+1.9
1,586,226	+		DDA3937_RS07065	0.14	+1.0
1,586,226	+		DDA3937_RS07065	0.14	+1.5
1,586,226	+		DDA3937_RS07065	0.14	+2.3
1,586,227	-		DDA3937_RS07065	0.14	-1.7
1,586,227	-		DDA3937_RS07065	0.14	+2.0
1,586,227	-		DDA3937_RS07065	0.14	+3.2
1,586,227	-		DDA3937_RS07065	0.14	-1.6
1,586,227	-		DDA3937_RS07065	0.14	-3.9
1,586,227	-		DDA3937_RS07065	0.14	+0.1
1,586,227	-		DDA3937_RS07065	0.14	-0.1
1,586,230	+		DDA3937_RS07065	0.15	+0.4
1,586,230	+				+1.4
1,586,230	+		DDA3937_RS07065	0.15	+1.1
1,586,230	+		DDA3937_RS07065	0.15	-1.9
1,586,230	+		DDA3937_RS07065	0.15	-1.5
1,586,230	+		DDA3937_RS07065	0.15	-0.2
1,586,230	+		DDA3937_RS07065	0.15	-1.6
1,586,231	-		DDA3937_RS07065	0.15	-3.2
1,586,231	-		DDA3937_RS07065	0.15	+1.9
1,586,231	-		DDA3937_RS07065	0.15	-1.6
1,586,231	-		DDA3937_RS07065	0.15	-2.5
1,586,231	-		DDA3937_RS07065	0.15	+0.8
1,586,231	-		DDA3937_RS07065	0.15	-0.2
1,586,231	-		DDA3937_RS07065	0.15	-1.2
1,586,231	-		DDA3937_RS07065	0.15	+1.7
1,586,231	-		DDA3937_RS07065	0.15	+2.4
1,586,231	-		DDA3937_RS07065	0.15	+1.8
1,586,268	+		DDA3937_RS07065	0.17	-0.2
1,586,268	+		DDA3937_RS07065	0.17	-2.6
1,586,340	+		DDA3937_RS07065	0.22	-1.9
1,586,341	-				+3.6
1,586,370	-		DDA3937_RS07065	0.24	-2.6
1,586,465	+		DDA3937_RS07065	0.30	+0.1
1,586,466	-				-1.2
1,586,466	-		DDA3937_RS07065	0.30	+2.1
1,586,544	-		DDA3937_RS07065	0.35	-1.2
1,586,906	+		DDA3937_RS07065	0.59	-2.0